BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0070.0003.p (396 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001242860.1| putative pimeloyl-CoA dehydrogenase pimC [Br... 778 0.0 ref|YP_001203136.1| putative acyl-CoA dehydrogenase/pimeloyl-CoA... 778 0.0 ref|NP_774458.1| acyl-CoA dehydrogenase [Bradyrhizobium japonicu... 772 0.0 ref|NP_949051.1| pimeloyl-CoA dehydrogenase large subunit [Rhodo... 724 0.0 ref|YP_004107986.1| pimeloyl-CoA dehydrogenase large subunit [Rh... 722 0.0 >ref|YP_001242860.1| putative pimeloyl-CoA dehydrogenase pimC [Bradyrhizobium sp. BTAi1] gb|ABQ38954.1| Putative pimeloyl-CoA dehydrogenase pimC (large subunit) [Bradyrhizobium sp. BTAi1] Length = 396 Score = 778 bits (2010), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/396 (92%), Positives = 389/396 (98%) Query: 1 MDLAFTKEEIAFREEVREFFKNNVPPETRRKLQEGRHLSKDEMVTWWRILNKKGWGVTHW 60 MDLAFTKEE AFREEVR+FF++NVPPETRRK+ EGRHLSKDEMVTWWRILNKKGWGV+HW Sbjct: 1 MDLAFTKEEQAFREEVRQFFRDNVPPETRRKMIEGRHLSKDEMVTWWRILNKKGWGVSHW 60 Query: 61 PKEYGGTGWSTVQHYIFNEELQSYPAPQPLAFGVSMVGPVIYTFGNEKQKKEYLPRIANV 120 P+EYGGTGWS+VQHYIFNEELQ+YPAPQPLAFGVSMVGPVIYTFGNE+QKK+YLPRIANV Sbjct: 61 PEEYGGTGWSSVQHYIFNEELQAYPAPQPLAFGVSMVGPVIYTFGNEEQKKKYLPRIANV 120 Query: 121 DDWWCQGFSEPGSGSDLASLKTKAERRGDKWIINGQKTWTTLAQHADMIFCLCRTDPAAK 180 DDWWCQGFSEPGSGSDLASLKTKAERRGDKWIINGQKTWTTLAQHADMIFCLCRTDP+AK Sbjct: 121 DDWWCQGFSEPGSGSDLASLKTKAERRGDKWIINGQKTWTTLAQHADMIFCLCRTDPSAK 180 Query: 181 KQMGISFIVFSMKSKGVTVRPIQTIDGGHEVNEVFFDDVEVPYENLIGEENKGWDYAKFL 240 KQMGISFIVFSMKSKGVTVRPIQTIDGG EVNEVFFDDVEVPYENLIGEENKGWDYAKFL Sbjct: 181 KQMGISFIVFSMKSKGVTVRPIQTIDGGREVNEVFFDDVEVPYENLIGEENKGWDYAKFL 240 Query: 241 LGNERTGIARVGVSKERLRRIRALASKVESGGRPVIEDPAFREKLTACEIELKALKLTQL 300 LGNERTGIARVGVSKER+RRI+ LA+KVESGGRPV+EDP+FREKLTACE+ELKAL+LTQL Sbjct: 241 LGNERTGIARVGVSKERIRRIKELAAKVESGGRPVLEDPSFREKLTACEVELKALELTQL 300 Query: 301 RVVADEGKHGKGKPNPASSVLKIKGSEIQQTTTELLMEIIGPFAAPYDEHGDAGSNESMD 360 RVVADEGKHGKGKPNPASSVLKIKGSEIQQTTTELLME+IGPFAAPYD HGD SNE+MD Sbjct: 301 RVVADEGKHGKGKPNPASSVLKIKGSEIQQTTTELLMEVIGPFAAPYDVHGDDDSNETMD 360 Query: 361 WTAQIAPSYFNNRKVSIYGGSNEIQRNIISKAVLGL 396 WTAQIAPSYFNNRKVSIYGGSNEIQRNII+KAVLGL Sbjct: 361 WTAQIAPSYFNNRKVSIYGGSNEIQRNIIAKAVLGL 396 >ref|YP_001203136.1| putative acyl-CoA dehydrogenase/pimeloyl-CoA dehydrogenase pimC [Bradyrhizobium sp. ORS 278] emb|CAL74899.1| Putative acyl-CoA dehydrogenase; pimeloyl-CoA dehydrogenase pimC (large subunit) [Bradyrhizobium sp. ORS 278] Length = 396 Score = 778 bits (2009), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/396 (92%), Positives = 389/396 (98%) Query: 1 MDLAFTKEEIAFREEVREFFKNNVPPETRRKLQEGRHLSKDEMVTWWRILNKKGWGVTHW 60 MDLAFT+EE AFREEVR+FF++NVPPETRRK+ EGRHLSKDEMVTWWRILNKKGWGV+HW Sbjct: 1 MDLAFTREEQAFREEVRQFFRDNVPPETRRKMVEGRHLSKDEMVTWWRILNKKGWGVSHW 60 Query: 61 PKEYGGTGWSTVQHYIFNEELQSYPAPQPLAFGVSMVGPVIYTFGNEKQKKEYLPRIANV 120 PKEYGGTGW++VQHYIFNEELQ+YPAPQPLAFGVSMVGPVIYTFGNE+QKK+YLPRIANV Sbjct: 61 PKEYGGTGWTSVQHYIFNEELQAYPAPQPLAFGVSMVGPVIYTFGNEEQKKKYLPRIANV 120 Query: 121 DDWWCQGFSEPGSGSDLASLKTKAERRGDKWIINGQKTWTTLAQHADMIFCLCRTDPAAK 180 DDWWCQGFSEPGSGSDLASLKTKAERRGDKWIINGQKTWTTLAQHADMIFCLCRTDP+AK Sbjct: 121 DDWWCQGFSEPGSGSDLASLKTKAERRGDKWIINGQKTWTTLAQHADMIFCLCRTDPSAK 180 Query: 181 KQMGISFIVFSMKSKGVTVRPIQTIDGGHEVNEVFFDDVEVPYENLIGEENKGWDYAKFL 240 KQMGISFIVFSMKSKGVTVRPIQTIDGGHEVNEVFFDDVEVP ENLIGEENKGWDYAKFL Sbjct: 181 KQMGISFIVFSMKSKGVTVRPIQTIDGGHEVNEVFFDDVEVPIENLIGEENKGWDYAKFL 240 Query: 241 LGNERTGIARVGVSKERLRRIRALASKVESGGRPVIEDPAFREKLTACEIELKALKLTQL 300 LGNERTGIARVGVSKER+RRI+ LA+KVESGGRPV+EDP+FREKLTACE+ELKAL+LTQL Sbjct: 241 LGNERTGIARVGVSKERIRRIKELAAKVESGGRPVLEDPSFREKLTACEVELKALELTQL 300 Query: 301 RVVADEGKHGKGKPNPASSVLKIKGSEIQQTTTELLMEIIGPFAAPYDEHGDAGSNESMD 360 RVVADEGKHGKGKPNPASSVLKIKGSEIQQTTTELLME+IGPFAAPYD HGD SNE+MD Sbjct: 301 RVVADEGKHGKGKPNPASSVLKIKGSEIQQTTTELLMEVIGPFAAPYDIHGDDDSNETMD 360 Query: 361 WTAQIAPSYFNNRKVSIYGGSNEIQRNIISKAVLGL 396 WTAQIAPSYFNNRKVSIYGGSNEIQRNII+KAVLGL Sbjct: 361 WTAQIAPSYFNNRKVSIYGGSNEIQRNIIAKAVLGL 396 >ref|NP_774458.1| acyl-CoA dehydrogenase [Bradyrhizobium japonicum USDA 110] dbj|BAC53083.1| bll7818 [Bradyrhizobium japonicum USDA 110] Length = 396 Score = 772 bits (1994), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/396 (92%), Positives = 385/396 (97%) Query: 1 MDLAFTKEEIAFREEVREFFKNNVPPETRRKLQEGRHLSKDEMVTWWRILNKKGWGVTHW 60 MDLAFTKEE AFREEVR FF++NVPP+TRRKL EGRHLSKDEMVTWWRILNKKGWGV+HW Sbjct: 1 MDLAFTKEEQAFREEVRSFFRDNVPPDTRRKLVEGRHLSKDEMVTWWRILNKKGWGVSHW 60 Query: 61 PKEYGGTGWSTVQHYIFNEELQSYPAPQPLAFGVSMVGPVIYTFGNEKQKKEYLPRIANV 120 PK+YGGTGW++VQHYIFNEELQSYPAPQPLAFGVSMVGPVIYTFGNE+QKK+YLPRIANV Sbjct: 61 PKQYGGTGWTSVQHYIFNEELQSYPAPQPLAFGVSMVGPVIYTFGNEEQKKKYLPRIANV 120 Query: 121 DDWWCQGFSEPGSGSDLASLKTKAERRGDKWIINGQKTWTTLAQHADMIFCLCRTDPAAK 180 DDWWCQGFSEPGSGSDLASLKTKAER+GDKWIINGQKTWTTLAQHADMIFCLCRTD AK Sbjct: 121 DDWWCQGFSEPGSGSDLASLKTKAERKGDKWIINGQKTWTTLAQHADMIFCLCRTDATAK 180 Query: 181 KQMGISFIVFSMKSKGVTVRPIQTIDGGHEVNEVFFDDVEVPYENLIGEENKGWDYAKFL 240 KQMGISFIVFSMKSKGVTVRPIQTIDGG EVNEVFFDDVEVPYENLIGEENKGWDYAKFL Sbjct: 181 KQMGISFIVFSMKSKGVTVRPIQTIDGGVEVNEVFFDDVEVPYENLIGEENKGWDYAKFL 240 Query: 241 LGNERTGIARVGVSKERLRRIRALASKVESGGRPVIEDPAFREKLTACEIELKALKLTQL 300 LGNERTGIARVGVSKERLRRIR LASKVESGG+P+I+D AFREKL ACEIELKAL+LTQL Sbjct: 241 LGNERTGIARVGVSKERLRRIRDLASKVESGGKPIIQDAAFREKLAACEIELKALELTQL 300 Query: 301 RVVADEGKHGKGKPNPASSVLKIKGSEIQQTTTELLMEIIGPFAAPYDEHGDAGSNESMD 360 RVVADEGKHGKGKPNPASSVLKIKGSEIQQTTTELLME+IGPFAAPYD HGD GSNE+M+ Sbjct: 301 RVVADEGKHGKGKPNPASSVLKIKGSEIQQTTTELLMEVIGPFAAPYDVHGDDGSNEAME 360 Query: 361 WTAQIAPSYFNNRKVSIYGGSNEIQRNIISKAVLGL 396 WTAQIAPSYFNNRKVSIYGGSNEIQRNII+KAVLGL Sbjct: 361 WTAQIAPSYFNNRKVSIYGGSNEIQRNIIAKAVLGL 396 >ref|NP_949051.1| pimeloyl-CoA dehydrogenase large subunit [Rhodopseudomonas palustris CGA009] ref|YP_001993206.1| pimeloyl-CoA dehydrogenase, large subunit [Rhodopseudomonas palustris TIE-1] emb|CAE29155.1| pimeloyl-CoA dehydrogenase (large subunit) [Rhodopseudomonas palustris CGA009] gb|ACF02731.1| pimeloyl-CoA dehydrogenase, large subunit [Rhodopseudomonas palustris TIE-1] Length = 396 Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust. Identities = 342/396 (86%), Positives = 373/396 (94%) Query: 1 MDLAFTKEEIAFREEVREFFKNNVPPETRRKLQEGRHLSKDEMVTWWRILNKKGWGVTHW 60 MDL F+KEEIAFR+EVR+FFK+NVP +TR+KL EGRH +K+EMV W+RILNKKGW VTHW Sbjct: 1 MDLNFSKEEIAFRDEVRQFFKDNVPAKTRQKLIEGRHNTKEEMVEWYRILNKKGWAVTHW 60 Query: 61 PKEYGGTGWSTVQHYIFNEELQSYPAPQPLAFGVSMVGPVIYTFGNEKQKKEYLPRIANV 120 PKEYGGTGWS+VQHYIFNEELQ+ PAPQPLAFGVSMVGPVIYTFG+E+QKK +LPRIANV Sbjct: 61 PKEYGGTGWSSVQHYIFNEELQAAPAPQPLAFGVSMVGPVIYTFGSEEQKKRFLPRIANV 120 Query: 121 DDWWCQGFSEPGSGSDLASLKTKAERRGDKWIINGQKTWTTLAQHADMIFCLCRTDPAAK 180 DDWWCQGFSEPGSGSDLASLKTKAE++GDKWIINGQKTWTTLAQHAD IFCLCRTDPAAK Sbjct: 121 DDWWCQGFSEPGSGSDLASLKTKAEKKGDKWIINGQKTWTTLAQHADWIFCLCRTDPAAK 180 Query: 181 KQMGISFIVFSMKSKGVTVRPIQTIDGGHEVNEVFFDDVEVPYENLIGEENKGWDYAKFL 240 KQ GISFI+ MK+KG+TVRPIQTIDGGHEVNEVFFDDVEVP ENL+G+ENKGWDYAKFL Sbjct: 181 KQEGISFILVDMKTKGITVRPIQTIDGGHEVNEVFFDDVEVPLENLVGQENKGWDYAKFL 240 Query: 241 LGNERTGIARVGVSKERLRRIRALASKVESGGRPVIEDPAFREKLTACEIELKALKLTQL 300 LGNERTGIARVG+SKER+RRI+ LA++VESGG+PVIEDP FR+KL A EIELKAL+LTQL Sbjct: 241 LGNERTGIARVGMSKERIRRIKQLAAQVESGGKPVIEDPKFRDKLAAVEIELKALELTQL 300 Query: 301 RVVADEGKHGKGKPNPASSVLKIKGSEIQQTTTELLMEIIGPFAAPYDEHGDAGSNESMD 360 RVVADEGKHGKGKPNPASSVLKIKGSEIQQ TTELLME+IGPFAAPYD HGD SNE+MD Sbjct: 301 RVVADEGKHGKGKPNPASSVLKIKGSEIQQATTELLMEVIGPFAAPYDVHGDDDSNETMD 360 Query: 361 WTAQIAPSYFNNRKVSIYGGSNEIQRNIISKAVLGL 396 WTAQIAP YFNNRKVSIYGGSNEIQRNII KAVLGL Sbjct: 361 WTAQIAPGYFNNRKVSIYGGSNEIQRNIICKAVLGL 396 >ref|YP_004107986.1| pimeloyl-CoA dehydrogenase large subunit [Rhodopseudomonas palustris DX-1] gb|ADU43253.1| pimeloyl-CoA dehydrogenase, large subunit [Rhodopseudomonas palustris DX-1] Length = 396 Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/396 (85%), Positives = 373/396 (94%) Query: 1 MDLAFTKEEIAFREEVREFFKNNVPPETRRKLQEGRHLSKDEMVTWWRILNKKGWGVTHW 60 MDL F+KEEIAFR+EVR+FFK+NVP +TR+KL EGRH +K+EMV W+RILNKKGW VTHW Sbjct: 1 MDLNFSKEEIAFRDEVRQFFKDNVPAKTRQKLIEGRHNTKEEMVEWYRILNKKGWAVTHW 60 Query: 61 PKEYGGTGWSTVQHYIFNEELQSYPAPQPLAFGVSMVGPVIYTFGNEKQKKEYLPRIANV 120 PKEYGGTGWS+VQHYIFNEELQ+ PAPQPLAFGVSMVGPVIYTFG+E+QKK +LPRIANV Sbjct: 61 PKEYGGTGWSSVQHYIFNEELQAAPAPQPLAFGVSMVGPVIYTFGSEEQKKRFLPRIANV 120 Query: 121 DDWWCQGFSEPGSGSDLASLKTKAERRGDKWIINGQKTWTTLAQHADMIFCLCRTDPAAK 180 DDWWCQGFSEPGSGSDLASLKTKAE++GDKWIINGQKTWTTLAQHAD IFCLCRTDPAAK Sbjct: 121 DDWWCQGFSEPGSGSDLASLKTKAEKKGDKWIINGQKTWTTLAQHADWIFCLCRTDPAAK 180 Query: 181 KQMGISFIVFSMKSKGVTVRPIQTIDGGHEVNEVFFDDVEVPYENLIGEENKGWDYAKFL 240 KQ GISFI+ MK+KG+TVRPIQTIDG HEVNEVFFDDVEVP ENL+G+ENKGWDYAKFL Sbjct: 181 KQEGISFILVDMKTKGITVRPIQTIDGSHEVNEVFFDDVEVPLENLVGQENKGWDYAKFL 240 Query: 241 LGNERTGIARVGVSKERLRRIRALASKVESGGRPVIEDPAFREKLTACEIELKALKLTQL 300 LGNERTGIARVG+SKER+RRI+ LA++VESGG+PVIEDP FR++L+A EIELKAL+LTQL Sbjct: 241 LGNERTGIARVGMSKERIRRIKQLAAQVESGGKPVIEDPKFRDRLSAVEIELKALELTQL 300 Query: 301 RVVADEGKHGKGKPNPASSVLKIKGSEIQQTTTELLMEIIGPFAAPYDEHGDAGSNESMD 360 RVVADEGKHGKGKPNPASSVLKIKGSEIQQ TTELLME+IGPFAAPYD HGD SNE+MD Sbjct: 301 RVVADEGKHGKGKPNPASSVLKIKGSEIQQATTELLMEVIGPFAAPYDVHGDDDSNETMD 360 Query: 361 WTAQIAPSYFNNRKVSIYGGSNEIQRNIISKAVLGL 396 WTAQIAP YFNNRKVSIYGGSNEIQRNII KAVLGL Sbjct: 361 WTAQIAPGYFNNRKVSIYGGSNEIQRNIICKAVLGL 396