BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0070.0002.p (381 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001203137.1| putative acyl-CoA dehydrogenase/pimeloyl-CoA... 684 0.0 ref|YP_001242859.1| putative pimeloyl-CoA dehydrogenase pimD [Br... 681 0.0 ref|NP_774457.1| acyl-CoA dehydrogenase [Bradyrhizobium japonicu... 665 0.0 ref|NP_949050.1| pimeloyl-CoA dehydrogenase small subunit [Rhodo... 652 0.0 ref|YP_570673.1| acyl-CoA dehydrogenase-like protein [Rhodopseud... 651 0.0 >ref|YP_001203137.1| putative acyl-CoA dehydrogenase/pimeloyl-CoA dehydrogenase pimD [Bradyrhizobium sp. ORS 278] emb|CAL74900.1| Putative acyl-CoA dehydrogenase; Pimeloyl-CoA dehydrogenase pimD (Small subunit) [Bradyrhizobium sp. ORS 278] Length = 380 Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust. Identities = 327/380 (86%), Positives = 358/380 (94%) Query: 1 MDFDLSEEQRLLKESVDGLLADAYDFDARKKYMKEKGGWSKALWGKLAEQGLLGLPFAET 60 MDFDL+EEQRLLK+S+DGLLADAYDFD RK YMKEKGGWS+A+W KLAEQGLLGLPF+E Sbjct: 1 MDFDLTEEQRLLKDSIDGLLADAYDFDKRKLYMKEKGGWSRAIWSKLAEQGLLGLPFSEE 60 Query: 61 DGGFGAGAVETMIVMEALGKALVVEPYLATVVVAGGFLRHGGSAEQKAKYIPGIIDGSRT 120 DGGFGAG VETMIVMEA+G+ALV+EPYLATVV++GGFLRHGGSA QK ++PGIIDGS+T Sbjct: 61 DGGFGAGGVETMIVMEAMGRALVLEPYLATVVLSGGFLRHGGSAAQKEAHLPGIIDGSKT 120 Query: 121 FGFAQLEKNSRYDLFDVVTTAKKKGAGWVIDGEKFVVLNGENADTLIVTARTKGGQRDKT 180 F FAQLEK SRYDLFDV T+AKKKG G+VIDGEKFVVLNGENADTLIVTART GGQRDK+ Sbjct: 121 FAFAQLEKQSRYDLFDVATSAKKKGDGYVIDGEKFVVLNGENADTLIVTARTSGGQRDKS 180 Query: 181 GIGVFLVPADAKGVTRKGYPTQDGLHAADITFTNVEVGADAAIGDPENGLPLIERVADEA 240 GIGVF+VPADAKGVTRKGYPTQDGLHAAD+TFT VEVGADAAIGDP NGLPLIERV DEA Sbjct: 181 GIGVFIVPADAKGVTRKGYPTQDGLHAADVTFTGVEVGADAAIGDPANGLPLIERVVDEA 240 Query: 241 RIALCAEAVGAMDESLKETVEYIKTRKQFGVAIGSFQSLQHRAADMFVALEQARSMSMFA 300 RIALCAEAVG MDESLK TVEYIKTRKQFGVAIGSFQSLQHRA+DMFVALEQARSMSMFA Sbjct: 241 RIALCAEAVGLMDESLKTTVEYIKTRKQFGVAIGSFQSLQHRASDMFVALEQARSMSMFA 300 Query: 301 TMASDFDDAKERSSAVAAAKVQVGKSLKFVGQQSIQLHGGIGMTMEAKIGHYFKRLTMIE 360 TMA++FDDAKER++++AAAKVQ+GKS KFVGQQSIQLHGGIGMTMEA+IGHYFKRLTMIE Sbjct: 301 TMAAEFDDAKERATSIAAAKVQIGKSAKFVGQQSIQLHGGIGMTMEARIGHYFKRLTMIE 360 Query: 361 NTLGDTDYHLRRVSEGGGLL 380 ++ GDTDYH RRVSE GGL+ Sbjct: 361 SSFGDTDYHTRRVSEAGGLI 380 >ref|YP_001242859.1| putative pimeloyl-CoA dehydrogenase pimD [Bradyrhizobium sp. BTAi1] gb|ABQ38953.1| Putative pimeloyl-CoA dehydrogenase pimD (Small subunit) [Bradyrhizobium sp. BTAi1] Length = 380 Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/380 (86%), Positives = 357/380 (93%) Query: 1 MDFDLSEEQRLLKESVDGLLADAYDFDARKKYMKEKGGWSKALWGKLAEQGLLGLPFAET 60 MDFDL+EEQRLLK+S+DGLLADAYDFD RK YMKEKGGWSKA+W KLAEQGLLGLPF+E Sbjct: 1 MDFDLTEEQRLLKDSIDGLLADAYDFDKRKLYMKEKGGWSKAIWSKLAEQGLLGLPFSEE 60 Query: 61 DGGFGAGAVETMIVMEALGKALVVEPYLATVVVAGGFLRHGGSAEQKAKYIPGIIDGSRT 120 DGGFGAG VETMIVMEA+G+ALV+EPYLATVV+AGGFLRHGGSA QKA ++PGIIDGS+T Sbjct: 61 DGGFGAGGVETMIVMEAMGRALVLEPYLATVVLAGGFLRHGGSAAQKAAHLPGIIDGSKT 120 Query: 121 FGFAQLEKNSRYDLFDVVTTAKKKGAGWVIDGEKFVVLNGENADTLIVTARTKGGQRDKT 180 F FAQLEK SRYDLFDV T+AKKKG G+VIDGEKFVVLNGENADTLIVTART GGQRDK+ Sbjct: 121 FAFAQLEKQSRYDLFDVATSAKKKGDGYVIDGEKFVVLNGENADTLIVTARTAGGQRDKS 180 Query: 181 GIGVFLVPADAKGVTRKGYPTQDGLHAADITFTNVEVGADAAIGDPENGLPLIERVADEA 240 GIGVF+VPA AKGVTRKGYPTQDGLHAADI+FT VEVGAD+ IGDP NGLPLIERV DEA Sbjct: 181 GIGVFIVPAGAKGVTRKGYPTQDGLHAADISFTGVEVGADSVIGDPANGLPLIERVVDEA 240 Query: 241 RIALCAEAVGAMDESLKETVEYIKTRKQFGVAIGSFQSLQHRAADMFVALEQARSMSMFA 300 RIALCAEAVG MDESLK TVE+IKTRKQFGVAIGSFQSLQHRA+DMFVALEQARSMSMFA Sbjct: 241 RIALCAEAVGLMDESLKTTVEHIKTRKQFGVAIGSFQSLQHRASDMFVALEQARSMSMFA 300 Query: 301 TMASDFDDAKERSSAVAAAKVQVGKSLKFVGQQSIQLHGGIGMTMEAKIGHYFKRLTMIE 360 TMA++FDDAKER++++AAAKVQ+GKS KFVGQQSIQLHGGIGMTMEAKIGHYFKRLTMIE Sbjct: 301 TMAAEFDDAKERATSIAAAKVQIGKSGKFVGQQSIQLHGGIGMTMEAKIGHYFKRLTMIE 360 Query: 361 NTLGDTDYHLRRVSEGGGLL 380 T GDTDYH+RRVSE GGL+ Sbjct: 361 TTFGDTDYHMRRVSEAGGLI 380 >ref|NP_774457.1| acyl-CoA dehydrogenase [Bradyrhizobium japonicum USDA 110] dbj|BAC53082.1| bll7817 [Bradyrhizobium japonicum USDA 110] Length = 380 Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust. Identities = 324/380 (85%), Positives = 353/380 (92%) Query: 1 MDFDLSEEQRLLKESVDGLLADAYDFDARKKYMKEKGGWSKALWGKLAEQGLLGLPFAET 60 MDFDLSEEQRLLKES+DGLL D+YDF++RKKYMKEKGGWS+A+WGKLAEQGLLGLPF+E Sbjct: 1 MDFDLSEEQRLLKESIDGLLTDSYDFESRKKYMKEKGGWSQAVWGKLAEQGLLGLPFSEA 60 Query: 61 DGGFGAGAVETMIVMEALGKALVVEPYLATVVVAGGFLRHGGSAEQKAKYIPGIIDGSRT 120 DGGFG G VETMIVMEALGKALV+EPYLATVV+ GGFLRH GS QKA Y+PGIIDGS+T Sbjct: 61 DGGFGGGGVETMIVMEALGKALVLEPYLATVVICGGFLRHAGSDAQKAAYVPGIIDGSKT 120 Query: 121 FGFAQLEKNSRYDLFDVVTTAKKKGAGWVIDGEKFVVLNGENADTLIVTARTKGGQRDKT 180 FAQLEKNSRYDLFDV TTAKKK GW+IDGEKFVVLNGENA TL+VTARTKG +RDKT Sbjct: 121 LAFAQLEKNSRYDLFDVSTTAKKKADGWIIDGEKFVVLNGENAATLLVTARTKGDRRDKT 180 Query: 181 GIGVFLVPADAKGVTRKGYPTQDGLHAADITFTNVEVGADAAIGDPENGLPLIERVADEA 240 GIGVFLVPA+AKGVT+K YPTQDGLHAADITFT VEVGADAAIG+PE+ L LIERV DEA Sbjct: 181 GIGVFLVPANAKGVTKKSYPTQDGLHAADITFTGVEVGADAAIGNPEDALALIERVVDEA 240 Query: 241 RIALCAEAVGAMDESLKETVEYIKTRKQFGVAIGSFQSLQHRAADMFVALEQARSMSMFA 300 R+ALCAEAVG MDESLK TVEYIKTRKQFGVAIGSFQSLQHRA+DMFVA EQARSMSMFA Sbjct: 241 RVALCAEAVGLMDESLKTTVEYIKTRKQFGVAIGSFQSLQHRASDMFVAAEQARSMSMFA 300 Query: 301 TMASDFDDAKERSSAVAAAKVQVGKSLKFVGQQSIQLHGGIGMTMEAKIGHYFKRLTMIE 360 TMA+DF++AKERS+A+AAAKVQ+GKSLKFVGQQSIQLHGGIGMTMEAKIGHYFKRLTMIE Sbjct: 301 TMANDFENAKERSNAIAAAKVQIGKSLKFVGQQSIQLHGGIGMTMEAKIGHYFKRLTMIE 360 Query: 361 NTLGDTDYHLRRVSEGGGLL 380 NT GDTDYH RRV++ GGL+ Sbjct: 361 NTFGDTDYHQRRVADAGGLV 380 >ref|NP_949050.1| pimeloyl-CoA dehydrogenase small subunit [Rhodopseudomonas palustris CGA009] ref|YP_001993205.1| pimeloyl-CoA dehydrogenase, small subunit [Rhodopseudomonas palustris TIE-1] emb|CAE29154.1| pimeloyl-CoA dehydrogenase (small subunit) [Rhodopseudomonas palustris CGA009] gb|ACF02730.1| pimeloyl-CoA dehydrogenase, small subunit [Rhodopseudomonas palustris TIE-1] Length = 380 Score = 652 bits (1681), Expect = 0.0, Method: Compositional matrix adjust. Identities = 318/380 (83%), Positives = 344/380 (90%) Query: 1 MDFDLSEEQRLLKESVDGLLADAYDFDARKKYMKEKGGWSKALWGKLAEQGLLGLPFAET 60 MDFDLSEEQRLLKESV+GLL +YDFD+RKKY KEKGGWS+A+WGK AEQGLLGLPF+E Sbjct: 1 MDFDLSEEQRLLKESVEGLLKGSYDFDSRKKYAKEKGGWSRAVWGKFAEQGLLGLPFSEE 60 Query: 61 DGGFGAGAVETMIVMEALGKALVVEPYLATVVVAGGFLRHGGSAEQKAKYIPGIIDGSRT 120 DGGFGAGAVETMIVMEALG +LV+EPYL TVV+ GGFLR GSA QKA ++PGIIDGS+T Sbjct: 61 DGGFGAGAVETMIVMEALGHSLVLEPYLPTVVIGGGFLRRAGSAAQKAAHLPGIIDGSKT 120 Query: 121 FGFAQLEKNSRYDLFDVVTTAKKKGAGWVIDGEKFVVLNGENADTLIVTARTKGGQRDKT 180 F FAQLEKNSR+DL DV TTAKK G GWVIDGEKFVVLNGE ADTLIVTARTKGGQRD+T Sbjct: 121 FAFAQLEKNSRWDLGDVSTTAKKSGDGWVIDGEKFVVLNGEAADTLIVTARTKGGQRDRT 180 Query: 181 GIGVFLVPADAKGVTRKGYPTQDGLHAADITFTNVEVGADAAIGDPENGLPLIERVADEA 240 G+GVFLVPADAKG+TRKGYPTQDGLHAADITFT V+VGADAAIGDPEN L LIE V D+A Sbjct: 181 GVGVFLVPADAKGITRKGYPTQDGLHAADITFTGVQVGADAAIGDPENALELIEAVVDDA 240 Query: 241 RIALCAEAVGAMDESLKETVEYIKTRKQFGVAIGSFQSLQHRAADMFVALEQARSMSMFA 300 R ALCAEAVG MDESL TVEYIKTRKQFGV IGSFQ LQHRAADMFVA EQARSM+MFA Sbjct: 241 RTALCAEAVGLMDESLTTTVEYIKTRKQFGVPIGSFQVLQHRAADMFVATEQARSMAMFA 300 Query: 301 TMASDFDDAKERSSAVAAAKVQVGKSLKFVGQQSIQLHGGIGMTMEAKIGHYFKRLTMIE 360 TMA++FDDAKER+ A+AAAKVQ+GKS KFVGQQSIQLHGGIGMTMEAKIGHYFKRLTMIE Sbjct: 301 TMAAEFDDAKERAGAIAAAKVQIGKSGKFVGQQSIQLHGGIGMTMEAKIGHYFKRLTMIE 360 Query: 361 NTLGDTDYHLRRVSEGGGLL 380 T GDTD+HL RVS GGGL+ Sbjct: 361 QTFGDTDHHLARVSAGGGLI 380 >ref|YP_570673.1| acyl-CoA dehydrogenase-like protein [Rhodopseudomonas palustris BisB5] gb|ABE40772.1| acyl-CoA dehydrogenase-like [Rhodopseudomonas palustris BisB5] Length = 380 Score = 651 bits (1679), Expect = 0.0, Method: Compositional matrix adjust. Identities = 315/380 (82%), Positives = 345/380 (90%) Query: 1 MDFDLSEEQRLLKESVDGLLADAYDFDARKKYMKEKGGWSKALWGKLAEQGLLGLPFAET 60 MDFDLSEEQRLLKESV+GLL +YDFD+RKKY KEK GWS+ +WGK AEQGLLGLPF+E Sbjct: 1 MDFDLSEEQRLLKESVEGLLKTSYDFDSRKKYAKEKDGWSRDVWGKFAEQGLLGLPFSEE 60 Query: 61 DGGFGAGAVETMIVMEALGKALVVEPYLATVVVAGGFLRHGGSAEQKAKYIPGIIDGSRT 120 DGGFGAGAVETMIVMEALG +LV+EPYL TV++AGGFLR GSAEQKA ++PGIIDGS+T Sbjct: 61 DGGFGAGAVETMIVMEALGHSLVLEPYLPTVILAGGFLRRAGSAEQKAAHLPGIIDGSKT 120 Query: 121 FGFAQLEKNSRYDLFDVVTTAKKKGAGWVIDGEKFVVLNGENADTLIVTARTKGGQRDKT 180 F FAQLEKNSR+DL DV TAKKKG GW+IDGEKFVVLNGE ADTL+VTART GGQRD+ Sbjct: 121 FAFAQLEKNSRWDLGDVAATAKKKGDGWIIDGEKFVVLNGEAADTLVVTARTSGGQRDRN 180 Query: 181 GIGVFLVPADAKGVTRKGYPTQDGLHAADITFTNVEVGADAAIGDPENGLPLIERVADEA 240 GIGVFLVPA+AKGV+RKGYPTQDG AADITFT VE+GADAAIGDP NGLPLIE+V D+A Sbjct: 181 GIGVFLVPANAKGVSRKGYPTQDGQRAADITFTGVEIGADAAIGDPANGLPLIEQVVDDA 240 Query: 241 RIALCAEAVGAMDESLKETVEYIKTRKQFGVAIGSFQSLQHRAADMFVALEQARSMSMFA 300 R ALCAEAVGAMDESL TVEYIKTRKQFGV IGSFQ LQHRAADMFVA EQARSM+MFA Sbjct: 241 RSALCAEAVGAMDESLTTTVEYIKTRKQFGVPIGSFQVLQHRAADMFVAAEQARSMAMFA 300 Query: 301 TMASDFDDAKERSSAVAAAKVQVGKSLKFVGQQSIQLHGGIGMTMEAKIGHYFKRLTMIE 360 TMA+DFDDAKER+SA+AAAKVQ+GKS KFVGQQSIQLHGGIGMTMEAKIGHYFKRLTMIE Sbjct: 301 TMAADFDDAKERASAIAAAKVQIGKSAKFVGQQSIQLHGGIGMTMEAKIGHYFKRLTMIE 360 Query: 361 NTLGDTDYHLRRVSEGGGLL 380 ++ GDTDYHL RVSE GGL+ Sbjct: 361 SSFGDTDYHLARVSESGGLI 380