BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0069.0017.p         (173 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_766709.1| hypothetical protein bll0069 [Bradyrhizobium ja...   340   6e-92
ref|YP_001603130.1| hypothetical protein GDI_2896 [Gluconacetoba...   311   3e-83
ref|ZP_07025962.1| protein of unknown function DUF955 [Afipia sp...   255   2e-66
ref|YP_001413097.1| hypothetical protein Plav_1823 [Parvibaculum...   253   8e-66
ref|YP_781391.1| hypothetical protein RPE_2472 [Rhodopseudomonas...   252   1e-65

>ref|NP_766709.1| hypothetical protein bll0069 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC45334.1| bll0069 [Bradyrhizobium japonicum USDA 110]
          Length = 173

 Score =  340 bits (871), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 172/173 (99%), Positives = 173/173 (100%)

Query: 1   VRDADPGRAREAARSILREFGVSAPPVPVERIIKSRKIVLQYAPLEEDLSGMAYIKDGIG 60
           +RDADPGRAREAARSILREFGVSAPPVPVERIIKSRKIVLQYAPLEEDLSGMAYIKDGIG
Sbjct: 1   MRDADPGRAREAARSILREFGVSAPPVPVERIIKSRKIVLQYAPLEEDLSGMAYIKDGIG 60

Query: 61  IIGVNALHHPNRQRFSAAHELAHHVLHDEDIRQAVHVDKGIRVLFRDDISALGTEPIEIE 120
           IIGVNALHHPNRQRFSAAHELAHHVLHDEDIRQAVHVDKGIRVLFRDDISALGTEPIEIE
Sbjct: 61  IIGVNALHHPNRQRFSAAHELAHHVLHDEDIRQAVHVDKGIRVLFRDDISALGTEPIEIE 120

Query: 121 ANAFASELLIPGDLLAAVLEGGGVDLEDEAAIEGLARRFRVSPAAMRFRLTRW 173
           ANAFASELLIPGDLLAAVLEGGGVDLEDEAAIEGLARRFRVSPAAMRFRLTRW
Sbjct: 121 ANAFASELLIPGDLLAAVLEGGGVDLEDEAAIEGLARRFRVSPAAMRFRLTRW 173


>ref|YP_001603130.1| hypothetical protein GDI_2896 [Gluconacetobacter diazotrophicus PAl
           5]
 emb|CAP56839.1| conserved hypothetical protein [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 173

 Score =  311 bits (796), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 155/171 (90%), Positives = 162/171 (94%)

Query: 3   DADPGRAREAARSILREFGVSAPPVPVERIIKSRKIVLQYAPLEEDLSGMAYIKDGIGII 62
           D DP RAR AAR+ILREFGVS PPVPVERIIKSR+IVLQYAPL+EDLSGMAYIKDGIGII
Sbjct: 3   DTDPDRARAAARTILREFGVSGPPVPVERIIKSRRIVLQYAPLDEDLSGMAYIKDGIGII 62

Query: 63  GVNALHHPNRQRFSAAHELAHHVLHDEDIRQAVHVDKGIRVLFRDDISALGTEPIEIEAN 122
           GVNALHHPNRQRFSAAHELAHHVLH  +I QAVHVDKGIRVLFR+D+SALGTEP+EIEAN
Sbjct: 63  GVNALHHPNRQRFSAAHELAHHVLHVLEISQAVHVDKGIRVLFRNDVSALGTEPMEIEAN 122

Query: 123 AFASELLIPGDLLAAVLEGGGVDLEDEAAIEGLARRFRVSPAAMRFRLTRW 173
           AFASELLIPGDLLAA LEGGGVDLEDEAAIE LARRFRVSPAAMRFRLTRW
Sbjct: 123 AFASELLIPGDLLAAALEGGGVDLEDEAAIEALARRFRVSPAAMRFRLTRW 173


>ref|ZP_07025962.1| protein of unknown function DUF955 [Afipia sp. 1NLS2]
 gb|EFI53104.1| protein of unknown function DUF955 [Afipia sp. 1NLS2]
          Length = 173

 Score =  255 bits (651), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 126/168 (75%), Positives = 143/168 (85%)

Query: 4   ADPGRAREAARSILREFGVSAPPVPVERIIKSRKIVLQYAPLEEDLSGMAYIKDGIGIIG 63
           ADP RAREAAR ILR FGV   PVPVERIIK+R IVLQYAPLEEDLSGMAYIKDG+GIIG
Sbjct: 3   ADPERAREAARVILRAFGVKGVPVPVERIIKARNIVLQYAPLEEDLSGMAYIKDGVGIIG 62

Query: 64  VNALHHPNRQRFSAAHELAHHVLHDEDIRQAVHVDKGIRVLFRDDISALGTEPIEIEANA 123
           VNALHHPNRQRFSAAHEL HH LH ++I +AVHVDKG RVL RDD+S+ G +P+EIEANA
Sbjct: 63  VNALHHPNRQRFSAAHELGHHELHAQEIGKAVHVDKGFRVLLRDDVSSQGIDPLEIEANA 122

Query: 124 FASELLIPGDLLAAVLEGGGVDLEDEAAIEGLARRFRVSPAAMRFRLT 171
           FASELL+P + L   L+ GG+D+ED+A IE LAR+FRVS AAMR+RL 
Sbjct: 123 FASELLMPREFLMGALDAGGLDIEDDAGIEALARKFRVSAAAMRYRLA 170


>ref|YP_001413097.1| hypothetical protein Plav_1823 [Parvibaculum lavamentivorans DS-1]
 gb|ABS63440.1| protein of unknown function DUF955 [Parvibaculum lavamentivorans
           DS-1]
          Length = 173

 Score =  253 bits (646), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 120/168 (71%), Positives = 146/168 (86%)

Query: 4   ADPGRAREAARSILREFGVSAPPVPVERIIKSRKIVLQYAPLEEDLSGMAYIKDGIGIIG 63
           A+P RAREAAR++L++FGV   PVPVERIIK+R IVLQYAPLEEDLSGMAYIKDG+GIIG
Sbjct: 3   ANPERAREAARAVLQDFGVKGVPVPVERIIKTRNIVLQYAPLEEDLSGMAYIKDGVGIIG 62

Query: 64  VNALHHPNRQRFSAAHELAHHVLHDEDIRQAVHVDKGIRVLFRDDISALGTEPIEIEANA 123
           VNALHHPNRQRFSAAHELAHHVLH  +I+++VH+DKG RVL RDD+S+ G +P+EIEANA
Sbjct: 63  VNALHHPNRQRFSAAHELAHHVLHAPEIQKSVHIDKGFRVLLRDDVSSQGIDPLEIEANA 122

Query: 124 FASELLIPGDLLAAVLEGGGVDLEDEAAIEGLARRFRVSPAAMRFRLT 171
           FASELL+P + L   L+  G+D+ED++ IE LAR+FRVS +AMR+RL 
Sbjct: 123 FASELLMPQEFLMDALDASGLDIEDDSGIEALARKFRVSASAMRYRLA 170


>ref|YP_781391.1| hypothetical protein RPE_2472 [Rhodopseudomonas palustris BisA53]
 gb|ABJ06411.1| protein of unknown function DUF955 [Rhodopseudomonas palustris
           BisA53]
          Length = 173

 Score =  252 bits (644), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 121/167 (72%), Positives = 146/167 (87%)

Query: 4   ADPGRAREAARSILREFGVSAPPVPVERIIKSRKIVLQYAPLEEDLSGMAYIKDGIGIIG 63
           A+P  AREAAR+ILREFG+   PVP+ERIIK+R +VLQYAPLE+DLSGMA+IKDGIGIIG
Sbjct: 3   ANPEMAREAARTILREFGLKGTPVPIERIIKARNVVLQYAPLEDDLSGMAFIKDGIGIIG 62

Query: 64  VNALHHPNRQRFSAAHELAHHVLHDEDIRQAVHVDKGIRVLFRDDISALGTEPIEIEANA 123
           VNALHHPNRQRF+AAHEL HHVLH   I++AVHVDKG RVL RDD+S+ G +P+EIEANA
Sbjct: 63  VNALHHPNRQRFTAAHELGHHVLHAAAIQKAVHVDKGFRVLLRDDVSSQGIDPLEIEANA 122

Query: 124 FASELLIPGDLLAAVLEGGGVDLEDEAAIEGLARRFRVSPAAMRFRL 170
           FASELL+P +LLA+ L+  G+++EDEA IE LA++FRVS +AMRFRL
Sbjct: 123 FASELLMPRELLASALDASGLEMEDEAGIEVLAKKFRVSASAMRFRL 169