BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0069.0013.p         (53 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_766713.1| hypothetical protein blr0073 [Bradyrhizobium ja...   110   9e-23
ref|YP_002962737.1| hypothetical protein MexAM1_META1p1601 [meth...    64   9e-09
ref|YP_002824197.1| hypothetical protein NGR_b19970 [Sinorhizobi...    56   2e-06
ref|YP_569426.1| hypothetical protein RPD_2293 [Rhodopseudomonas...    55   5e-06
ref|YP_003756186.1| hypothetical protein Hden_2064 [Hyphomicrobi...    53   1e-05

>ref|NP_766713.1| hypothetical protein blr0073 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC45338.1| blr0073 [Bradyrhizobium japonicum USDA 110]
          Length = 151

 Score =  110 bits (274), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 53/53 (100%), Positives = 53/53 (100%)

Query: 1   MLDPDSDDWSPFDSLSQTTVPWVIEWLAAYEGWRATGQWTASGRHVVAGGVGV 53
           MLDPDSDDWSPFDSLSQTTVPWVIEWLAAYEGWRATGQWTASGRHVVAGGVGV
Sbjct: 99  MLDPDSDDWSPFDSLSQTTVPWVIEWLAAYEGWRATGQWTASGRHVVAGGVGV 151


>ref|YP_002962737.1| hypothetical protein MexAM1_META1p1601 [methylobacterium extorquens
           AM1]
 gb|ACS39460.1| conserved hypothetical protein [Methylobacterium extorquens AM1]
          Length = 131

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 25/46 (54%), Positives = 35/46 (76%)

Query: 1   MLDPDSDDWSPFDSLSQTTVPWVIEWLAAYEGWRATGQWTASGRHV 46
           + D  + +W+PFD ++ TTVPW ++WL  YEGWRATG+WT  GRH+
Sbjct: 79  LFDIKTAEWTPFDLIALTTVPWSLDWLGCYEGWRATGEWTGGGRHI 124


>ref|YP_002824197.1| hypothetical protein NGR_b19970 [Sinorhizobium fredii NGR234]
 gb|ACP23444.1| hypothetical protein NGR_b19970 [Sinorhizobium fredii NGR234]
          Length = 158

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 32/53 (60%)

Query: 1   MLDPDSDDWSPFDSLSQTTVPWVIEWLAAYEGWRATGQWTASGRHVVAGGVGV 53
           + DP +D+W     LS+T VPW  +WLA YE W  TG+WT  GRH +    GV
Sbjct: 104 LCDPAADEWDATMHLSRTIVPWSADWLACYELWLMTGRWTGGGRHPIPRAAGV 156


>ref|YP_569426.1| hypothetical protein RPD_2293 [Rhodopseudomonas palustris BisB5]
 gb|ABE39525.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5]
          Length = 136

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 31/45 (68%)

Query: 1   MLDPDSDDWSPFDSLSQTTVPWVIEWLAAYEGWRATGQWTASGRH 45
           + DP   +WSP  +++ TTVPW ++W+A YE W  TG+WT  GRH
Sbjct: 79  LFDPREREWSPAMTIASTTVPWGLDWIACYELWLMTGRWTGGGRH 123


>ref|YP_003756186.1| hypothetical protein Hden_2064 [Hyphomicrobium denitrificans ATCC
          51888]
 gb|ADJ23865.1| hypothetical protein Hden_2064 [Hyphomicrobium denitrificans ATCC
          51888]
          Length = 45

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/32 (68%), Positives = 27/32 (84%)

Query: 15 LSQTTVPWVIEWLAAYEGWRATGQWTASGRHV 46
          LS+TTV W I+WLA Y+GWRATG+W  SGRH+
Sbjct: 7  LSETTVKWTIDWLACYDGWRATGKWAGSGRHL 38