BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0069.0004.p (419 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001205494.1| putative D-amino-acid dehydrogenase, FAD dep... 597 e-169 ref|YP_003552385.1| putative D-amino-acid dehydrogenase, FAD dep... 342 9e-92 ref|YP_002947447.1| D-amino-acid dehydrogenase [Variovorax parad... 338 1e-90 ref|YP_531533.1| D-amino-acid dehydrogenase [Rhodopseudomonas pa... 319 5e-85 ref|YP_003979310.1| FAD dependent oxidoreductase [Achromobacter ... 318 2e-84 >ref|YP_001205494.1| putative D-amino-acid dehydrogenase, FAD dependent [Bradyrhizobium sp. ORS 278] emb|CAL77268.1| putative D-amino-acid dehydrogenase, FAD dependent [Bradyrhizobium sp. ORS 278] Length = 416 Score = 597 bits (1540), Expect = e-169, Method: Compositional matrix adjust. Identities = 306/411 (74%), Positives = 342/411 (83%) Query: 8 QQVDVAVLGAGMVGVSAGLAARQRGLSVVIVDRREPRSQTSYGNAGIISSGSILPLNTPS 67 Q DV VLGAG+VGVS+ A R+RGLSVV+VDR+ P +TSYGNAGI+SSGSILPLN PS Sbjct: 6 QATDVVVLGAGIVGVSSAYAIRERGLSVVLVDRKAPGEETSYGNAGILSSGSILPLNKPS 65 Query: 68 LLKNLPKYLTNAHPALRWNIAWALANAGWVMRFLAAATPSQTRPRAAALHGLIGTSLKLH 127 L + LP YL N ALRW+ AW L N WV+RFLA A S+ RPRA ALHGLIG SL LH Sbjct: 66 LFRALPSYLGNRSAALRWDPAWTLRNIEWVLRFLANAVESRVRPRATALHGLIGASLPLH 125 Query: 128 RDWIVQAGAGHRIRETGWLKAWRSDGLAAAQAEQAALAEFGIRSEVLDRQAISALEPNII 187 RDWIV+AG RIRETGWLKAWRSD + AA+AEQA LAE+GI+SE+LDRQAISALEPN++ Sbjct: 126 RDWIVRAGEPQRIRETGWLKAWRSDAVGAAKAEQAFLAEYGIKSELLDRQAISALEPNML 185 Query: 188 PAYSTGLLHAQTASVDSPGAVVKAYAQMLAAGGGTIRQSGIRRIEPHGDGWRVQLADGEI 247 P Y GLLH+QTASVDSPG V KAYA+M+ GG IRQS IR + GDGWRV L DGEI Sbjct: 186 PVYKVGLLHSQTASVDSPGNVTKAYARMVEGAGGVIRQSEIRALLSGGDGWRVVLGDGEI 245 Query: 248 AARHVVVALGPWSAELLRPLGYRVPLAFERGYHQHFVPNPARKLLRPIHDADGGFLMTPM 307 ARHVVVALGPWS ELLRPLGY+VP+AFERGYHQ F PNP R+LLRPIHDA+ FLMTPM Sbjct: 246 RARHVVVALGPWSPELLRPLGYKVPMAFERGYHQEFTPNPNRRLLRPIHDAEASFLMTPM 305 Query: 308 EQGVRVTSGVELTARDAPSNFSQLEAVVPMARSVVEFGDAVGERWRGARPTLPDSLPMIG 367 E GVRVTSGVELT RDAPSNF+QLE VVP+AR VVEFGDAV + WRGARP+LPDSLPMIG Sbjct: 306 ENGVRVTSGVELTERDAPSNFAQLEQVVPLARGVVEFGDAVAQPWRGARPSLPDSLPMIG 365 Query: 368 AAPRHRGLWLAFGNQHIGFTTGPGTGAAIAAMIAGDAPPFEAQAFSPNRYI 418 APRH GLWLAFGNQHIGFTTGP TGAAIAAMIAG+AP F+A AF+P+RY+ Sbjct: 366 PAPRHSGLWLAFGNQHIGFTTGPATGAAIAAMIAGEAPSFDAAAFAPSRYL 416 >ref|YP_003552385.1| putative D-amino-acid dehydrogenase, FAD dependent [Candidatus Puniceispirillum marinum IMCC1322] gb|ADE40301.1| putative D-amino-acid dehydrogenase, FAD dependent [Candidatus Puniceispirillum marinum IMCC1322] Length = 414 Score = 342 bits (876), Expect = 9e-92, Method: Compositional matrix adjust. Identities = 170/409 (41%), Positives = 245/409 (59%), Gaps = 2/409 (0%) Query: 11 DVAVLGAGMVGVSAGLAARQRGLSVVIVDRREPRSQTSYGNAGIISSGSILPLNTPSLLK 70 ++AV+G G+VGV + L +Q G V ++DR++P +TSYGNAG++S S+L +N P LL+ Sbjct: 4 NIAVIGGGIVGVCSALDLQQAGHHVTLIDRKQPGRETSYGNAGVLSESSVLVMNNPVLLR 63 Query: 71 NLPKYLTNAHPALRWNIAWALANAGWVMRFLAAATPSQTRPRAAALHGLIGTSLKLHRDW 130 LP L N LR+N + L WV++FL+ T S + A AL L SL H+ W Sbjct: 64 KLPGLLRNQSTGLRYNPLFVLKRLPWVLKFLSYCTKSHAKHAAKALRALQVLSLGHHKAW 123 Query: 131 IVQAGAGHRIRETGWLKAWRSD-GLAAAQAEQAALAEFGIRSEVLDRQAISALEPNIIPA 189 I +A H +R GW+K +R+ G AE A+ E G++ + +R+ I LEP + P Sbjct: 124 INEANVTHLLRYAGWMKLFRTQKGFDGFAAEIEAMQETGVKFTIYEREQIRQLEPGLEPI 183 Query: 190 YSTGLLHAQTASVDSPGAVVKAYAQMLAAGGGTIRQSGIRRIEPHGDGWRVQLADGEIAA 249 Y +L +T V SP + AY M A GGT+ ++ + + P G+ V+ ++G + Sbjct: 184 YEKAVLMDETCGVSSPAELTDAYIAMFIAAGGTVTKADVTGLVPQNPGFEVKHSEGALVF 243 Query: 250 RHVVVALGPWSAELLRPLGYRVPLAFERGYHQHFVPNPARKLLRPIHDADGGFLMTPMEQ 309 VVVA GPWSA++ + LGY VPL +ERGYH H P +L R +D +GGF + PM Q Sbjct: 244 DQVVVAAGPWSADVAKWLGYNVPLGWERGYHMHLEPGDVPQLGRAAYDVEGGFAIAPMRQ 303 Query: 310 GVRVTSGVELTARDAPSNFSQLEAVVPMARSVVEF-GDAVGERWRGARPTLPDSLPMIGA 368 GVR+TSGVE RDAP N++Q+ V AR + + G+ E W G RPTL DSLP++G Sbjct: 304 GVRITSGVEFEHRDAPPNYTQIRKAVAEARKIHKMKGEIDAEPWMGRRPTLIDSLPIVGP 363 Query: 369 APRHRGLWLAFGNQHIGFTTGPGTGAAIAAMIAGDAPPFEAQAFSPNRY 417 APRH+GLW FG+QH+G + PG+ I +MI G PP +A + +R+ Sbjct: 364 APRHKGLWFNFGHQHLGLSMAPGSAKLITSMIDGGTPPIDASPYRADRF 412 >ref|YP_002947447.1| D-amino-acid dehydrogenase [Variovorax paradoxus S110] gb|ACS22181.1| D-amino-acid dehydrogenase [Variovorax paradoxus S110] Length = 418 Score = 338 bits (866), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 184/414 (44%), Positives = 257/414 (62%), Gaps = 8/414 (1%) Query: 12 VAVLGAGMVGVSAGLAARQRGLSVVIVDRREPRSQTSYGNAGIISSGSILPLNTPSLLKN 71 VAVLGAG+VGVS L ++RG V + DR P +TSYGNAG+I+ S++P N P L + Sbjct: 5 VAVLGAGIVGVSCALELQRRGFDVTVFDRTAPGRETSYGNAGVIARSSLMPFNHPGLWSS 64 Query: 72 LPKYLTNAHPALRWNIAWALANAGWVMRFLAAATPSQTRPRAAALHGLIGTSLKLHRDWI 131 LP+ L N+ R+N + N W ++FLA A + AAL LI S + H + Sbjct: 65 LPRLLKNSSAGFRYNPLFLAKNLPWALKFLANARAAVFHETTAALDALIRLSTQEHLRLL 124 Query: 132 VQAGAGHRIRETGWLKAWRS-DGLAAAQAEQAALAEFGIRSEVLDRQAISALEPNIIPAY 190 AGA HR+R GWL +RS +G Q + +FGI +++LD + ++ LEP++ P + Sbjct: 125 GGAGAAHRLRTNGWLFLYRSEEGFLGGQRSRDTFKKFGIATQLLDARELAQLEPHLKPLF 184 Query: 191 STGLLHAQTASVDSPGAVVKAYAQMLAAGGGTIRQS---GIRRIEPHGDGWRVQLADGEI 247 L TASVDSPG VV+AYA++ A GG IRQ+ G+RR + GD W++ G + Sbjct: 185 PRALWIQDTASVDSPGQVVEAYARLFTARGGRIRQASIGGLRRSDA-GDAWQLSEDGGTL 243 Query: 248 -AARHVVVALGPWSAELLRP-LGYRVPLAFERGYHQHFVPNPARKLLRPIHDADGGFLMT 305 A VV+ALGPWS E + LG VP+A+ERGYH H+ L RP++D GG++++ Sbjct: 244 HEASRVVLALGPWSREFAKKALGLSVPMAYERGYHMHYGAAGGASLGRPVYDTGGGYVLS 303 Query: 306 PMEQGVRVTSGVELTARDAPSNFSQLEAVVPMARSVVEFGDAVG-ERWRGARPTLPDSLP 364 PMEQG+R+++GV+LT R+AP N +QL+ AR + + E W G+RPTLPDS P Sbjct: 304 PMEQGLRLSTGVQLTDREAPRNLAQLDLAERAAREAFPLEERLDKEAWLGSRPTLPDSRP 363 Query: 365 MIGAAPRHRGLWLAFGNQHIGFTTGPGTGAAIAAMIAGDAPPFEAQAFSPNRYI 418 +IG P GLWLAFG+QHIGF T PGT A + AM+AG+A F+ F P+R++ Sbjct: 364 VIGECPGRPGLWLAFGHQHIGFNTAPGTAALLGAMMAGEACAFDPAPFRPSRFL 417 >ref|YP_531533.1| D-amino-acid dehydrogenase [Rhodopseudomonas palustris BisB18] gb|ABD87214.1| D-amino-acid dehydrogenase [Rhodopseudomonas palustris BisB18] Length = 418 Score = 319 bits (818), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 177/414 (42%), Positives = 245/414 (59%), Gaps = 4/414 (0%) Query: 8 QQVDVAVLGAGMVGVSAGLAARQRGLSVVIVDRREPR-SQTSYGNAGIISSGSILPLNTP 66 ++VDV VLGAG+VGVSA L +QRG VV+VD+ + +TSYGNAG+I S+ P P Sbjct: 4 RKVDVLVLGAGVVGVSAALHLQQRGRDVVLVDKHDQAGEETSYGNAGLIECASVFPYIFP 63 Query: 67 SLLKNLPKYLTNAHPALRWNIAWALANAGWVMRFLAAATPSQTRPRAAALHGLIGTSLKL 126 L++ +Y N + + ++ W++R+ A++P ++ A A LI SL Sbjct: 64 RDLRHFLRYSLNRSTDVHYQLSGLPDYLLWLIRYFLASSPQRSLHSAMAALPLIRRSLTE 123 Query: 127 HRDWIVQAGAGHRIRETGWLKAWRSDG-LAAAQAEQAALAEFGIRSEVLDRQAISALEPN 185 H I QAG +R TGW K +RS+ +A + E FG+ EVLD +AI+ EPN Sbjct: 124 HEALIEQAGVPQLLRRTGWTKLFRSEASMARSLTELERARAFGVDGEVLDAKAIAQREPN 183 Query: 186 IIPAYSTGLLHAQTASVDSPGAVVKAYAQMLAAGGGTIRQSGIRRIEPHGDGWRVQLADG 245 + ++ + + + PGA+VKAYA + GG R +E G WR+ LADG Sbjct: 184 LSGPFAGAIHWPEPGFIPDPGALVKAYAALFQRNGGRFSHGDARLLEQDGALWRLALADG 243 Query: 246 E-IAARHVVVALGPWSAELLRPLGYRVPLAFERGYHQHFVPNPARKLLRPIHDADGGFLM 304 +AAR VVVALGPWS + R LGYR+PL +RGYHQHFVP L P+ D+D G+L+ Sbjct: 244 SSVAAREVVVALGPWSDLVFRKLGYRIPLGVKRGYHQHFVPRGNAVLGHPVLDSDRGYLL 303 Query: 305 TPMEQGVRVTSGVELTARDAPSNFSQLEAVVPMARSVVEFGDAV-GERWRGARPTLPDSL 363 PM +G+R+T+G E RDAP + Q+E P+AR + G+A+ W GARP LPD L Sbjct: 304 APMNKGIRLTTGAEFARRDAPPSPVQIERATPLARELFPLGEAIEATPWMGARPCLPDML 363 Query: 364 PMIGAAPRHRGLWLAFGNQHIGFTTGPGTGAAIAAMIAGDAPPFEAQAFSPNRY 417 P++G APRH GLW FG+QH G T GP TG +A MI G+ P + + FS R+ Sbjct: 364 PVLGPAPRHPGLWFDFGHQHHGLTLGPATGRLLAEMITGEQPFADPKPFSVERF 417 >ref|YP_003979310.1| FAD dependent oxidoreductase [Achromobacter xylosoxidans A8] gb|ADP16595.1| FAD dependent oxidoreductase family protein 7 [Achromobacter xylosoxidans A8] Length = 405 Score = 318 bits (814), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 181/406 (44%), Positives = 244/406 (60%), Gaps = 5/406 (1%) Query: 14 VLGAGMVGVSAGLAARQRGLSVVIVDRREPRSQTSYGNAGIISSGSILPLNTPSLLKNLP 73 VLGAG+VGVS L RG SVV++DRR P +TSYGNAG+I S++P P ++L Sbjct: 2 VLGAGIVGVSTALHLAARGRSVVLLDRRGPGEETSYGNAGLIERASVIPYAFPRDWRSLW 61 Query: 74 KYLTNAHPALRWNIAWALANAGWVMRFLAAATPSQTRPRAAALHGLIGTSLKLHRDWIVQ 133 +Y N P + ++ + A W++R+ + PS+ A A+ LI S+ H + Sbjct: 62 RYARNNTPDVSYHPRFLPRIAPWLLRYWWHSAPSRLARAAEAMLPLIERSVAEHDALKDE 121 Query: 134 AGAGHRIRETGWLKAWRSD-GLAAAQAEQAALAEFGIRSEVLDRQAISALEPNIIPAYST 192 AG H R GW+ RS+ GL A AE ALA +G+ VLDRQA++ALEP++ + Sbjct: 122 AGISHLFRRNGWIDGMRSEAGLTQAVAEAQALAPYGLNYRVLDRQALAALEPSL--SRMA 179 Query: 193 GLLH-AQTASVDSPGAVVKAYAQMLAAGGGTIRQSGIRRIEPHGDGWRVQLADGEIAARH 251 G +H +V PGAV + YA + GG + + R ++P G GW+VQ G I AR Sbjct: 180 GAVHWLDPVNVSDPGAVTQGYAALFERRGGVLARGDARSLKPSGKGWQVQGEQGLIEARD 239 Query: 252 VVVALGPWSAELLRPLGYRVPLAFERGYHQHFVPNPARKLLRPIHDADGGFLMTPMEQGV 311 VVVALGPWS ++LRPLGYR+P+A +RGYHQHF L P+ D + GFL+TPM GV Sbjct: 240 VVVALGPWSPDILRPLGYRLPMAVKRGYHQHFALEDGAALSHPVADIESGFLVTPMTLGV 299 Query: 312 RVTSGVELTARDAPSNFSQLEAVVPMARSVVEFGDAVG-ERWRGARPTLPDSLPMIGAAP 370 R+T+G E ARDAP + Q++ +AR ++ G+AV E W G RP +PD P+IG AP Sbjct: 300 RLTTGAEFAARDAPPSPIQIQRTRALARQLLPLGEAVEREPWMGCRPCMPDMRPVIGPAP 359 Query: 371 RHRGLWLAFGNQHIGFTTGPGTGAAIAAMIAGDAPPFEAQAFSPNR 416 RH GLWLAFG+ H GFT GP TG +A MI G AP + + R Sbjct: 360 RHPGLWLAFGHAHHGFTLGPVTGKLLACMITGQAPDMDPAPYRVGR 405