BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0068.0064.p         (267 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_08627048.1| replication protein A [Bradyrhizobiaceae bact...   397   e-108
ref|YP_004109607.1| Replication initiator protein A [Rhodopseudo...   362   4e-98
ref|YP_533753.1| putative replication protein A [Rhodopseudomona...   361   7e-98
ref|YP_001239354.1| putative replication protein A [Bradyrhizobi...   355   3e-96
ref|YP_782938.1| putative replication protein A [Rhodopseudomona...   355   4e-96

>ref|ZP_08627048.1| replication protein A [Bradyrhizobiaceae bacterium SG-6C]
 gb|EGP10328.1| replication protein A [Bradyrhizobiaceae bacterium SG-6C]
          Length = 293

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/204 (94%), Positives = 198/204 (97%)

Query: 3   MRRKHHSEHDQLELFRALPADLARRDAQDLMAYPFFSLAKTKRVVPIDFRAGGIAIRVEP 62
           MRRKHHSE DQLELFRALP DLA RDAQDLMAYPFFSLAKTKR+VPIDFRAG IAIRVE 
Sbjct: 1   MRRKHHSERDQLELFRALPGDLAPRDAQDLMAYPFFSLAKTKRIVPIDFRAGAIAIRVEA 60

Query: 63  VPEHGMATIWDADVLIWAASQIVEARDAGLKTSRLMAATPYEILTFAGRGTSARDYDRLK 122
           VPEHG+ATIWDADVLIWAASQIVEARDAGLKTSRLMAATPYE+LTF GRGTSARDYDRLK
Sbjct: 61  VPEHGLATIWDADVLIWAASQIVEARDAGLKTSRLMAATPYEMLTFVGRGTSARDYDRLK 120

Query: 123 AGLDRLQSTTVMTSIRQPTERRRNRFSWINEWKETADANGRPFGLELILPDWFYAGVIDD 182
           AGLDRLQSTTVMTSIRQPTERRR+RFSWINEWKETADA+GRPFGLELILPDWFYAGVIDD
Sbjct: 121 AGLDRLQSTTVMTSIRQPTERRRHRFSWINEWKETADASGRPFGLELILPDWFYAGVIDD 180

Query: 183 ALVLTIDRAYFDLTGGLERWLYRL 206
           ALVLTIDRAYFDLTGGLERWLYRL
Sbjct: 181 ALVLTIDRAYFDLTGGLERWLYRL 204


>ref|YP_004109607.1| Replication initiator protein A [Rhodopseudomonas palustris DX-1]
 gb|ADU44874.1| Replication initiator protein A [Rhodopseudomonas palustris DX-1]
          Length = 293

 Score =  362 bits (928), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 177/216 (81%), Positives = 191/216 (88%), Gaps = 1/216 (0%)

Query: 3   MRRKHHSEHDQLELFRALPADLARRDAQDLMAYPFFSLAKTKRVVPIDFRAGGIAIRVEP 62
           MRR+H SE DQL+LFRALP DL+ RDAQDLMAYPFFSLAK+KR+ PIDFRAG I IRVE 
Sbjct: 1   MRRRHSSERDQLDLFRALPGDLSPRDAQDLMAYPFFSLAKSKRIAPIDFRAGKITIRVEA 60

Query: 63  VPEHGMATIWDADVLIWAASQIVEARDAGLKTSRLMAATPYEILTFAGRGTSARDYDRLK 122
           VPE+GMATIWDADVLIWAASQIVEARDAGLKTSRLMAATPYEILTF GRGTSARDYDRLK
Sbjct: 61  VPEYGMATIWDADVLIWAASQIVEARDAGLKTSRLMAATPYEILTFVGRGTSARDYDRLK 120

Query: 123 AGLDRLQSTTVMTSIRQPTERRRNRFSWINEWKETADANGRPFGLELILPDWFYAGVIDD 182
           A LDRLQ+TT++TSIRQ  ERRR+RFSWINEWKET+D +GRP GLELILPDWFYA V+DD
Sbjct: 121 AALDRLQATTILTSIRQQLERRRHRFSWINEWKETSDPHGRPLGLELILPDWFYAAVLDD 180

Query: 183 ALVLTIDRAYFDLTGGLERWLYRLAASTAVGRTVAG 218
           ALVLTIDRAYF LTGG+ERWLYRL      GR   G
Sbjct: 181 ALVLTIDRAYFGLTGGVERWLYRLVRKHG-GRQAGG 215


>ref|YP_533753.1| putative replication protein A [Rhodopseudomonas palustris BisB18]
 gb|ABD89434.1| putative replication protein A [Rhodopseudomonas palustris BisB18]
          Length = 293

 Score =  361 bits (926), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 177/206 (85%), Positives = 188/206 (91%)

Query: 1   VTMRRKHHSEHDQLELFRALPADLARRDAQDLMAYPFFSLAKTKRVVPIDFRAGGIAIRV 60
           + +RR   SE +QLELFRALP DL+ RDAQDLMAYPFFSLAK+KRV PIDFRAG IAIRV
Sbjct: 1   MAIRRLRRSEREQLELFRALPGDLSPRDAQDLMAYPFFSLAKSKRVAPIDFRAGKIAIRV 60

Query: 61  EPVPEHGMATIWDADVLIWAASQIVEARDAGLKTSRLMAATPYEILTFAGRGTSARDYDR 120
           E VPE+GMATIWDADVLIWAASQIVEARDAGLKTSRLMAATPYEILTF GRGT ARDYDR
Sbjct: 61  EAVPEYGMATIWDADVLIWAASQIVEARDAGLKTSRLMAATPYEILTFVGRGTGARDYDR 120

Query: 121 LKAGLDRLQSTTVMTSIRQPTERRRNRFSWINEWKETADANGRPFGLELILPDWFYAGVI 180
           LKA LDRLQSTT+MTSIRQPTERRR+RFSWINEWKETAD +GR  GLELILPDWFYAGV+
Sbjct: 121 LKAALDRLQSTTIMTSIRQPTERRRHRFSWINEWKETADPHGRALGLELILPDWFYAGVL 180

Query: 181 DDALVLTIDRAYFDLTGGLERWLYRL 206
           D+ALVLTID AYF LTGGLERWLYRL
Sbjct: 181 DEALVLTIDGAYFSLTGGLERWLYRL 206


>ref|YP_001239354.1| putative replication protein A [Bradyrhizobium sp. BTAi1]
 gb|ABQ35448.1| putative replication protein A [Bradyrhizobium sp. BTAi1]
          Length = 293

 Score =  355 bits (912), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 176/216 (81%), Positives = 192/216 (88%), Gaps = 1/216 (0%)

Query: 3   MRRKHHSEHDQLELFRALPADLARRDAQDLMAYPFFSLAKTKRVVPIDFRAGGIAIRVEP 62
           MR    +E +QLELFRALP DLA RDAQDLMAYPFFSLAK++RVVPIDFRAG I IRVE 
Sbjct: 1   MRGSWRAEREQLELFRALPGDLAPRDAQDLMAYPFFSLAKSRRVVPIDFRAGTITIRVEA 60

Query: 63  VPEHGMATIWDADVLIWAASQIVEARDAGLKTSRLMAATPYEILTFAGRGTSARDYDRLK 122
           VPEHGMATIWDADVLIWAASQIVEARDAGL+TSRLMAATP+EILTF GRGT ARDYDRLK
Sbjct: 61  VPEHGMATIWDADVLIWAASQIVEARDAGLRTSRLMAATPHEILTFVGRGTGARDYDRLK 120

Query: 123 AGLDRLQSTTVMTSIRQPTERRRNRFSWINEWKETADANGRPFGLELILPDWFYAGVIDD 182
           AGLDRLQ+TTV+TSIRQ TERRR+RFSWINEW+ETADA+G+P GL+LILPDWFY+GV+D+
Sbjct: 121 AGLDRLQATTVLTSIRQLTERRRHRFSWINEWRETADAHGKPSGLQLILPDWFYSGVLDN 180

Query: 183 ALVLTIDRAYFDLTGGLERWLYRLAASTAVGRTVAG 218
           ALVLTIDRAYFDL GGLERWLYRL      GR   G
Sbjct: 181 ALVLTIDRAYFDLRGGLERWLYRLVRKHG-GRQQGG 215


>ref|YP_782938.1| putative replication protein A [Rhodopseudomonas palustris BisA53]
 gb|ABJ07958.1| putative replication protein A [Rhodopseudomonas palustris BisA53]
          Length = 295

 Score =  355 bits (911), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 174/203 (85%), Positives = 185/203 (91%)

Query: 4   RRKHHSEHDQLELFRALPADLARRDAQDLMAYPFFSLAKTKRVVPIDFRAGGIAIRVEPV 63
           RR   SE +QLELFRALP DL+ RDAQDLMAYPFFSLAK+KR+ PIDFRAG I IRVE V
Sbjct: 4   RRLRTSEREQLELFRALPGDLSPRDAQDLMAYPFFSLAKSKRIAPIDFRAGKITIRVEAV 63

Query: 64  PEHGMATIWDADVLIWAASQIVEARDAGLKTSRLMAATPYEILTFAGRGTSARDYDRLKA 123
           PE+GMATIWDADVLIWAASQIVEARDAGLKTSRLMAATPYEILTF GRGT ARDYDRLKA
Sbjct: 64  PEYGMATIWDADVLIWAASQIVEARDAGLKTSRLMAATPYEILTFVGRGTGARDYDRLKA 123

Query: 124 GLDRLQSTTVMTSIRQPTERRRNRFSWINEWKETADANGRPFGLELILPDWFYAGVIDDA 183
            LDRLQSTT++TSIRQPTERRR+RFSWINEWKETAD +GR  GLELILPDWFYAGV+D+A
Sbjct: 124 ALDRLQSTTIVTSIRQPTERRRHRFSWINEWKETADPHGRALGLELILPDWFYAGVLDEA 183

Query: 184 LVLTIDRAYFDLTGGLERWLYRL 206
           LVLTID AYF LTGGLERWLYRL
Sbjct: 184 LVLTIDGAYFGLTGGLERWLYRL 206