BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0068.0059.p         (79 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004144770.1| hypothetical protein Mesci_5630 [Mesorhizobi...   135   2e-30
ref|YP_001243159.1| putative DNA binding protein [Bradyrhizobium...   131   3e-29
ref|YP_004089432.1| helix-turn-helix domain protein [Asticcacaul...   126   1e-27
ref|YP_002542580.1| hypothetical protein Avi_9055 [Agrobacterium...   126   1e-27
ref|YP_001967497.1| orf_Bo096 [Agrobacterium tumefaciens] >gi|71...   124   3e-27

>ref|YP_004144770.1| hypothetical protein Mesci_5630 [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 ref|YP_004614700.1| hypothetical protein Mesop_6213 [Mesorhizobium opportunistum
           WSM2075]
 gb|ADV14720.1| hypothetical protein Mesci_5630 [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gb|AEH90606.1| conserved hypothetical protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 111

 Score =  135 bits (339), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 73/79 (92%)

Query: 1   MAVVAERAFTSRSTLQRVEAGDTNVGIGIYAGVLQALGLLDGLNQIADISNDSVGRALAS 60
           MAVVAERAFTSRSTLQRVEAGDTNV +GIYAGVLQALGLL+GL Q+ADISNDSVG+ALAS
Sbjct: 33  MAVVAERAFTSRSTLQRVEAGDTNVSVGIYAGVLQALGLLEGLGQVADISNDSVGQALAS 92

Query: 61  ADLPQRVHLQRPARSSHDG 79
           ADLP+ VHLQRP  SS DG
Sbjct: 93  ADLPKHVHLQRPTGSSRDG 111


>ref|YP_001243159.1| putative DNA binding protein [Bradyrhizobium sp. BTAi1]
 gb|ABQ39253.1| putative DNA binding protein [Bradyrhizobium sp. BTAi1]
          Length = 79

 Score =  131 bits (330), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 65/79 (82%), Positives = 73/79 (92%)

Query: 1  MAVVAERAFTSRSTLQRVEAGDTNVGIGIYAGVLQALGLLDGLNQIADISNDSVGRALAS 60
          MAVVAERAFTSRSTLQ+VEAGDTNV +GIYAGVLQALGLLDGL +IADISNDSVG+ALAS
Sbjct: 1  MAVVAERAFTSRSTLQKVEAGDTNVSVGIYAGVLQALGLLDGLTRIADISNDSVGQALAS 60

Query: 61 ADLPQRVHLQRPARSSHDG 79
          A+LP+ +HL+R A SS DG
Sbjct: 61 AELPKHIHLKRSAGSSRDG 79


>ref|YP_004089432.1| helix-turn-helix domain protein [Asticcacaulis excentricus CB 48]
 gb|ADU15281.1| helix-turn-helix domain protein [Asticcacaulis excentricus CB 48]
          Length = 97

 Score =  126 bits (317), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 64/78 (82%), Positives = 70/78 (89%)

Query: 1  MAVVAERAFTSRSTLQRVEAGDTNVGIGIYAGVLQALGLLDGLNQIADISNDSVGRALAS 60
          MAVVAERAFTSRSTLQ+VEAGDTNV IGIYAGVLQALGLLDGL QIADISND VG+AL+S
Sbjct: 19 MAVVAERAFTSRSTLQKVEAGDTNVSIGIYAGVLQALGLLDGLGQIADISNDKVGQALSS 78

Query: 61 ADLPQRVHLQRPARSSHD 78
          ADLP+ VHL+R   SS +
Sbjct: 79 ADLPKHVHLKRSPVSSRN 96


>ref|YP_002542580.1| hypothetical protein Avi_9055 [Agrobacterium vitis S4]
 gb|ACM39395.1| conserved hypothetical protein [Agrobacterium vitis S4]
          Length = 111

 Score =  126 bits (316), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 64/78 (82%), Positives = 71/78 (91%)

Query: 1   MAVVAERAFTSRSTLQRVEAGDTNVGIGIYAGVLQALGLLDGLNQIADISNDSVGRALAS 60
           MAVVAERAFTSRSTLQ++EAGDTNV IGIYAGVLQALGLLDGL Q+ADISNDSVG+ALAS
Sbjct: 33  MAVVAERAFTSRSTLQKIEAGDTNVSIGIYAGVLQALGLLDGLTQLADISNDSVGQALAS 92

Query: 61  ADLPQRVHLQRPARSSHD 78
           ADLP+RV L+  + SS D
Sbjct: 93  ADLPKRVRLKPASGSSRD 110


>ref|YP_001967497.1| orf_Bo096 [Agrobacterium tumefaciens]
 gb|AAZ50484.1| orf_Bo096 [Agrobacterium tumefaciens]
          Length = 111

 Score =  124 bits (312), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 62/79 (78%), Positives = 73/79 (92%)

Query: 1   MAVVAERAFTSRSTLQRVEAGDTNVGIGIYAGVLQALGLLDGLNQIADISNDSVGRALAS 60
           MAVVAERAFTSRSTLQ++EAGD+NV IGIYAGVLQALGLL+GL+++ADI NDSVG+ALAS
Sbjct: 33  MAVVAERAFTSRSTLQKIEAGDSNVSIGIYAGVLQALGLLEGLSKVADIGNDSVGQALAS 92

Query: 61  ADLPQRVHLQRPARSSHDG 79
           ADLP+RV L+R + SS DG
Sbjct: 93  ADLPKRVRLKRVSGSSSDG 111