BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0068.0051.p         (436 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001241874.1| hypothetical protein BBta_6039 [Bradyrhizobi...   238   1e-60
ref|YP_533475.1| hypothetical protein RPC_3621 [Rhodopseudomonas...   207   3e-51
ref|ZP_06256565.1| conserved hypothetical protein [Prevotella or...    39   1.4  
ref|YP_199248.1| phage-related integrase [Xanthomonas oryzae pv....    39   2.4  
ref|YP_449590.1| phage-related integrase [Xanthomonas oryzae pv....    39   2.4  

>ref|YP_001241874.1| hypothetical protein BBta_6039 [Bradyrhizobium sp. BTAi1]
 gb|ABQ37968.1| hypothetical protein BBta_6039 [Bradyrhizobium sp. BTAi1]
          Length = 205

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 121/222 (54%), Positives = 145/222 (65%), Gaps = 39/222 (17%)

Query: 25  GYFFEPPTWARKQGCPVHAEALGQDFASAVERTESILLPAFDSWRSGGLTDMLPVLPVPG 84
            YFFEPPTW+RKQGC ++AEALG+D  +AVER E++LLP FDSWRS GLTD+ P   V G
Sbjct: 23  AYFFEPPTWSRKQGCEINAEALGEDDTAAVERAETVLLPGFDSWRSRGLTDLGPPALVSG 82

Query: 85  TFDWLVSVFRAHQRWRDIDHKTQRLYSQGLQLFANHELKDGSRVGSKQITDFTKAFVDAV 144
                                                  +G+R GS+QI  FTK FVDAV
Sbjct: 83  ---------------------------------------NGTRAGSRQIGQFTKGFVDAV 103

Query: 145 YAKLLVVQYKDREGNAAKRERRRFANAAMTACRRAWFVGQRAQETMVPQVNPFSRMGLKS 204
           YAKLL+V+ +D+ GN   RER RFANAA+ ACRRAWFVG RA+E  VP +NPFSRMGLK+
Sbjct: 104 YAKLLIVEERDKNGNIIHRERPRFANAAVVACRRAWFVGHRAREKNVPAINPFSRMGLKA 163

Query: 205 RAPGQPMRETPTASWDELAAFRKAAKRLGYHSIGTAALLSWE 246
           RAP +  RETPTA+W EL AF + A  +GY S+ TAALLSWE
Sbjct: 164 RAPNRAARETPTATWVELVAFCRKANEMGYRSVATAALLSWE 205


>ref|YP_533475.1| hypothetical protein RPC_3621 [Rhodopseudomonas palustris BisB18]
 gb|ABD89156.1| hypothetical protein RPC_3621 [Rhodopseudomonas palustris BisB18]
          Length = 328

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 118/291 (40%), Positives = 167/291 (57%), Gaps = 18/291 (6%)

Query: 108 RLYSQGLQLFANHELKDGSRVGSKQITDFTKAFVDAVYAKLLVVQYKDREGNAAKRERRR 167
           R++  G+++   + L+DG R+G+++++    AF D ++ KLL   YK+   N  K ERR 
Sbjct: 26  RVHETGIKMICEYVLQDGRRLGTRRLSSIDTAFTDDLFEKLL---YKNV--NGEKIERRT 80

Query: 168 FANAAMTACRRAWFVGQRAQETMVPQVNPFSRMGLKSRAPGQPMRETPTASWDELAAFRK 227
             N AM   R AW    RA   + P  NPF +MGL+S +     RETP A+++ELA FR 
Sbjct: 81  TVNHAMKTARSAWNTVSRANPGLFPPKNPFEKMGLQSTS-----RETPHATFEELALFRA 135

Query: 228 AAKRLGYHSIGTAALLSWEWLQREEHVFGAFEIAHYRPKERSNSVRIVHPKNNEEAWWPL 287
            A  +GY S+ T  L+ WE LQR+ H+F  F   HYRP  R N V +++ K +  +W PL
Sbjct: 136 KAIEMGYPSLATGVLIGWELLQRKAHIFIRFVTDHYRPPNRPNHVYVINYKTSTGSWEPL 195

Query: 288 FDDKGGPLFPELVAELDAIKGS-VVSGLVFRRDHAHRKSSALIPWMTERKDLRYLRHVVK 346
            + KG PL+P L+ ELDAIK      GL+ RRD         +PW  + + L  +  V K
Sbjct: 196 LNAKGKPLYPLLMTELDAIKAKRPTGGLMLRRDVNG------LPWGGKGEMLTQVERVSK 249

Query: 347 KIVIAAGLRHELSFTSF-RHGGFTEGADSDLTDAELRAAGRHRSRQQLPTY 396
           KI++AA LR EL+FTSF RHGG TE + S LT+ +L   G+  S   +  Y
Sbjct: 250 KIILAASLRSELTFTSFGRHGGTTEASTSGLTETQLMQKGQWSSTTAMAHY 300


>ref|ZP_06256565.1| conserved hypothetical protein [Prevotella oris F0302]
 gb|EFB31070.1| conserved hypothetical protein [Prevotella oris F0302]
          Length = 456

 Score = 39.3 bits (90), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 3/52 (5%)

Query: 150 VVQYKDREGNAA-KRERRRFANAAMTAC--RRAWFVGQRAQETMVPQVNPFS 198
           V Q +D+EGN    +  RRF+N ++ AC   + WF+GQR++ +    ++ +S
Sbjct: 382 VFQMRDKEGNVLWTQALRRFSNVSVGACYGNKIWFLGQRSRRSGYDDIHSYS 433


>ref|YP_199248.1| phage-related integrase [Xanthomonas oryzae pv. oryzae KACC10331]
 ref|YP_001911879.1| site-specific recombinase [Xanthomonas oryzae pv. oryzae PXO99A]
 gb|AAW73863.1| phage-related integrase [Xanthomonas oryzae pv. oryzae KACC10331]
 gb|ACD57347.1| site-specific recombinase, phage integrase family [Xanthomonas
           oryzae pv. oryzae PXO99A]
          Length = 424

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 30/60 (50%)

Query: 82  VPGTFDWLVSVFRAHQRWRDIDHKTQRLYSQGLQLFANHELKDGSRVGSKQITDFTKAFV 141
           V GT  +L   F     ++++ H TQ+ Y +     AN+  KDGS++G  Q+   T   V
Sbjct: 101 VRGTLRYLFDRFHEASEFKELQHDTQKDYRRYADTLANYVRKDGSKLGGVQLEHITTPVV 160


>ref|YP_449590.1| phage-related integrase [Xanthomonas oryzae pv. oryzae MAFF 311018]
 dbj|BAE67316.1| phage-related integrase [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 395

 Score = 38.5 bits (88), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 30/60 (50%)

Query: 82  VPGTFDWLVSVFRAHQRWRDIDHKTQRLYSQGLQLFANHELKDGSRVGSKQITDFTKAFV 141
           V GT  +L   F     ++++ H TQ+ Y +     AN+  KDGS++G  Q+   T   V
Sbjct: 72  VRGTLRYLFDRFHEASEFKELQHDTQKDYRRYADTLANYVRKDGSKLGGVQLEHITTPVV 131