BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0068.0045.p (154 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_485136.1| transcription elongation factor GreA [Rhodopseu... 176 1e-42 ref|YP_319055.1| transcription elongation factor GreA [Nitrobact... 175 2e-42 ref|YP_004110619.1| GreA/GreB family elongation factor [Rhodopse... 175 2e-42 ref|YP_568594.1| transcription elongation factor GreA [Rhodopseu... 175 2e-42 ref|YP_578104.1| transcription elongation factor GreA [Nitrobact... 174 4e-42 >ref|YP_485136.1| transcription elongation factor GreA [Rhodopseudomonas palustris HaA2] gb|ABD06225.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris HaA2] Length = 174 Score = 176 bits (446), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 91/152 (59%), Positives = 115/152 (75%), Gaps = 1/152 (0%) Query: 1 MTAAGHAALNDELADRTRIKRPHLAERIQQAIADEPNLIENSEYQAALGEQRLNEARIAE 60 MTA G+AAL+DEL R + RP + E I +A + +L EN+EY AA EQ NE RIAE Sbjct: 23 MTAGGYAALSDELKKRQSVDRPRIIEHIAEARS-HGDLSENAEYHAAKEEQSHNEGRIAE 81 Query: 61 LESKLARAEIIEVSKLSGETIKFGATVTLTDQDTGEERICQIVGEPEADPAKGKISFSSP 120 LE KLARA+II++SKLSG+TIKFGATVTL D+DT ++ + QIVGE EAD KGKIS +SP Sbjct: 82 LEDKLARADIIDISKLSGDTIKFGATVTLIDEDTEKKAVWQIVGENEADAKKGKISITSP 141 Query: 121 LARALIGRSKGSVVAVQTPGGDKSYKVEQVRW 152 LARALIG++KG+ V V PGG K+Y++ +V W Sbjct: 142 LARALIGKTKGTSVEVVAPGGAKAYEIAKVEW 173 >ref|YP_319055.1| transcription elongation factor GreA [Nitrobacter winogradskyi Nb-255] sp|Q3SPT8.1|GREA_NITWN RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gb|ABA05703.1| transcription elongation factor GreA [Nitrobacter winogradskyi Nb-255] Length = 158 Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 92/152 (60%), Positives = 113/152 (74%), Gaps = 1/152 (0%) Query: 1 MTAAGHAALNDELADRTRIKRPHLAERIQQAIADEPNLIENSEYQAALGEQRLNEARIAE 60 MT GHAAL DEL R + RP + E+I +A A +L EN+EY AA EQ NE RIAE Sbjct: 7 MTRGGHAALADELKKRQSVDRPRIIEQIAEARA-HGDLSENAEYHAAKEEQSHNEGRIAE 65 Query: 61 LESKLARAEIIEVSKLSGETIKFGATVTLTDQDTGEERICQIVGEPEADPAKGKISFSSP 120 LE KLARA+II+VSKLSG+TIKFGATVTL D+DT ++ + QIVGE EAD +G+IS +SP Sbjct: 66 LEDKLARADIIDVSKLSGDTIKFGATVTLIDEDTDKKAVWQIVGEAEADAKQGRISITSP 125 Query: 121 LARALIGRSKGSVVAVQTPGGDKSYKVEQVRW 152 LARALIG+ KGS V V PGG K+Y++ +V W Sbjct: 126 LARALIGKKKGSSVEVVAPGGAKAYEIAKVEW 157 >ref|YP_004110619.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris DX-1] gb|ADU45886.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris DX-1] Length = 158 Score = 175 bits (443), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 91/152 (59%), Positives = 114/152 (75%), Gaps = 1/152 (0%) Query: 1 MTAAGHAALNDELADRTRIKRPHLAERIQQAIADEPNLIENSEYQAALGEQRLNEARIAE 60 MTA+G+AAL+DEL R + RP + E I +A + +L EN+EY AA EQ NE RI E Sbjct: 7 MTASGYAALSDELKHRQSVDRPRIIEHIAEARS-HGDLSENAEYHAAKEEQSHNEGRINE 65 Query: 61 LESKLARAEIIEVSKLSGETIKFGATVTLTDQDTGEERICQIVGEPEADPAKGKISFSSP 120 LE KLARA+II+VSKLSG+T+KFGATVTL D+DT ++ + QIVGE EAD KGKIS +SP Sbjct: 66 LEDKLARADIIDVSKLSGDTVKFGATVTLIDEDTEKKAVWQIVGEAEADAKKGKISITSP 125 Query: 121 LARALIGRSKGSVVAVQTPGGDKSYKVEQVRW 152 LARALIG+ GS V V PGG K+Y++E+V W Sbjct: 126 LARALIGKKAGSSVEVVAPGGAKAYEIEKVEW 157 >ref|YP_568594.1| transcription elongation factor GreA [Rhodopseudomonas palustris BisB5] gb|ABE38693.1| transcription elongation factor GreA [Rhodopseudomonas palustris BisB5] Length = 165 Score = 175 bits (443), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 90/152 (59%), Positives = 115/152 (75%), Gaps = 1/152 (0%) Query: 1 MTAAGHAALNDELADRTRIKRPHLAERIQQAIADEPNLIENSEYQAALGEQRLNEARIAE 60 MTA G+AAL+DEL R + RP + E I +A + +L EN+EY AA EQ NE RIAE Sbjct: 14 MTAGGYAALSDELKHRQSVDRPRIIEHIAEARS-HGDLSENAEYHAAKEEQSHNEGRIAE 72 Query: 61 LESKLARAEIIEVSKLSGETIKFGATVTLTDQDTGEERICQIVGEPEADPAKGKISFSSP 120 LE KLARA+II++SKLSG+TIKFGATVTL D+DT ++ + QIVGE EAD KGKIS +SP Sbjct: 73 LEDKLARADIIDISKLSGDTIKFGATVTLIDEDTEKKAVWQIVGESEADAKKGKISITSP 132 Query: 121 LARALIGRSKGSVVAVQTPGGDKSYKVEQVRW 152 LARALIG+++G+ V V PGG K+Y++ +V W Sbjct: 133 LARALIGKTQGTSVEVVAPGGAKAYEIAKVEW 164 >ref|YP_578104.1| transcription elongation factor GreA [Nitrobacter hamburgensis X14] sp|Q1QJF3.1|GREA_NITHX RecName: Full=Transcription elongation factor greA; AltName: Full=Transcript cleavage factor greA gb|ABE63644.1| GreA/GreB family elongation factor [Nitrobacter hamburgensis X14] Length = 158 Score = 174 bits (441), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 91/152 (59%), Positives = 112/152 (73%), Gaps = 1/152 (0%) Query: 1 MTAAGHAALNDELADRTRIKRPHLAERIQQAIADEPNLIENSEYQAALGEQRLNEARIAE 60 MT GHAAL DEL R + RP + E I +A + +L EN+EY AA +Q NE RIAE Sbjct: 7 MTRGGHAALADELKKRQSVDRPRIIEHIAEARS-HGDLSENAEYHAAKEDQSHNEGRIAE 65 Query: 61 LESKLARAEIIEVSKLSGETIKFGATVTLTDQDTGEERICQIVGEPEADPAKGKISFSSP 120 LE KLARAEII+VSKLSG+TIKFGATVTL D+DT ++ + QIVGE EAD KG+IS +SP Sbjct: 66 LEDKLARAEIIDVSKLSGDTIKFGATVTLIDEDTDKKAVWQIVGEAEADAKKGRISITSP 125 Query: 121 LARALIGRSKGSVVAVQTPGGDKSYKVEQVRW 152 LARALIG+ KG+ V V PGG K+Y++ +V W Sbjct: 126 LARALIGKKKGASVEVVAPGGAKAYEITKVEW 157