BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0068.0039.p (261 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_945720.1| RNA polymerase factor sigma-32 [Rhodopseudomona... 297 1e-78 ref|YP_001773526.1| RNA polymerase factor sigma-32 [Methylobacte... 296 1e-78 ref|YP_530498.1| RNA polymerase factor sigma-32 [Rhodopseudomona... 296 2e-78 ref|YP_001758268.1| RNA polymerase factor sigma-32 [Methylobacte... 295 3e-78 ref|YP_004106573.1| RNA polymerase sigma 32 subunit RpoH [Rhodop... 295 4e-78 >ref|NP_945720.1| RNA polymerase factor sigma-32 [Rhodopseudomonas palustris CGA009] ref|YP_001989407.1| RNA polymerase factor sigma-32 [Rhodopseudomonas palustris TIE-1] emb|CAE25811.1| RNA polymerase sigma 32 subunit, RpoH, stress response sigma factor [Rhodopseudomonas palustris CGA009] gb|ACE98931.1| RNA polymerase, sigma 32 subunit, RpoH [Rhodopseudomonas palustris TIE-1] Length = 299 Score = 297 bits (760), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 143/248 (57%), Positives = 194/248 (78%), Gaps = 1/248 (0%) Query: 1 MYARRLRDAGDSEAAYRLVTSHLRLAAKIALKYRRYGLPIADLISEANVGLMLAVRRFDP 60 M A+R R+ GD +AA++LVTSHLRL AKIA+ YR YGLPI++++SE NVGLM AV+RF+P Sbjct: 36 MLAKRWREHGDRDAAHQLVTSHLRLVAKIAMGYRGYGLPISEVVSEGNVGLMQAVKRFEP 95 Query: 61 EKGFRLATYAAWWIKASVQEFVLRSWSLVKLGTTAAQKKLFFNLQKLKRRLGTPDDGELS 120 EKGFRLATYA WWIKAS+QE++LRSWSLVK+GTTA QKKLFFNL+K K ++ D+G+L Sbjct: 96 EKGFRLATYAMWWIKASIQEYILRSWSLVKMGTTANQKKLFFNLRKAKSKISALDEGDLH 155 Query: 121 PEQVKQISDHLQVKQTDVVEMNGRIRGDMTLNVQLSDE-EGEQWQDRVADSSPDPETLLV 179 P+QVK I+ L V + DVV+MN R+ GD +LN + D+ E +WQD + D SP E ++ Sbjct: 156 PDQVKLIATRLGVTEQDVVDMNRRLGGDASLNAPIRDDGEPGEWQDWLVDQSPSQEAVMA 215 Query: 180 EAGDRERQKAALSEALCALSPRERTIVEARYMADEQRTLDDLANTFGISRERIRQIEQRA 239 E + ++++AAL+ A+ L+PRER I EAR +ADE TL+DLA+ FG+SRER+RQIE RA Sbjct: 216 EHEELDQRRAALNGAIQVLNPRERRIFEARRLADEPMTLEDLASEFGVSRERVRQIEVRA 275 Query: 240 LQRIKSTL 247 ++++S + Sbjct: 276 FEKVQSAV 283 >ref|YP_001773526.1| RNA polymerase factor sigma-32 [Methylobacterium sp. 4-46] gb|ACA21092.1| RNA polymerase, sigma 32 subunit, RpoH [Methylobacterium sp. 4-46] Length = 296 Score = 296 bits (759), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 143/247 (57%), Positives = 188/247 (76%) Query: 1 MYARRLRDAGDSEAAYRLVTSHLRLAAKIALKYRRYGLPIADLISEANVGLMLAVRRFDP 60 M A+ R+ GD EAA++LVTSHLRL AKIA+ YR YGLPI +++SE NVGLM AV+RFDP Sbjct: 34 MLAKSWREHGDREAAHKLVTSHLRLVAKIAMGYRGYGLPIGEVVSEGNVGLMQAVKRFDP 93 Query: 61 EKGFRLATYAAWWIKASVQEFVLRSWSLVKLGTTAAQKKLFFNLQKLKRRLGTPDDGELS 120 +KGFRLATYA WWIKA++QE++LRSWSLVK+GTTA QKKLFFNL+K K R+ D+G+L Sbjct: 94 DKGFRLATYAMWWIKAAIQEYILRSWSLVKMGTTANQKKLFFNLRKAKGRISALDEGDLR 153 Query: 121 PEQVKQISDHLQVKQTDVVEMNGRIRGDMTLNVQLSDEEGEQWQDRVADSSPDPETLLVE 180 PEQVKQI+ L V + DV+EMN R+ GD +LN L +E +WQD + D SP E +L Sbjct: 154 PEQVKQIATRLGVPEQDVIEMNRRLSGDASLNAPLREEGEGEWQDWLVDDSPSQEAVLAR 213 Query: 181 AGDRERQKAALSEALCALSPRERTIVEARYMADEQRTLDDLANTFGISRERIRQIEQRAL 240 + + + AAL +AL L+PRER I EAR +A+E TL+DL++ FG+SRER+RQIE RA Sbjct: 214 EEEGQNRLAALRDALSVLNPRERRIFEARRLAEEPITLEDLSSEFGVSRERVRQIEVRAF 273 Query: 241 QRIKSTL 247 ++++ + Sbjct: 274 EKVQDAV 280 >ref|YP_530498.1| RNA polymerase factor sigma-32 [Rhodopseudomonas palustris BisB18] gb|ABD86179.1| sigma 32 (RpoH) [Rhodopseudomonas palustris BisB18] Length = 299 Score = 296 bits (758), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 141/248 (56%), Positives = 192/248 (77%), Gaps = 1/248 (0%) Query: 1 MYARRLRDAGDSEAAYRLVTSHLRLAAKIALKYRRYGLPIADLISEANVGLMLAVRRFDP 60 M+A+R R+ D +AA+ LVTSHLRL AKIA+ YR YGLPI++++SE NVGLM AV+RF+P Sbjct: 36 MFAKRWREHDDRDAAHHLVTSHLRLVAKIAMGYRGYGLPISEVVSEGNVGLMQAVKRFEP 95 Query: 61 EKGFRLATYAAWWIKASVQEFVLRSWSLVKLGTTAAQKKLFFNLQKLKRRLGTPDDGELS 120 EKGFRLATYA WWIKAS+QE++LRSWSLVK+GTTA QKKLFFNL+K K ++ D+G++ Sbjct: 96 EKGFRLATYAMWWIKASIQEYILRSWSLVKMGTTANQKKLFFNLRKAKSKISALDEGDMH 155 Query: 121 PEQVKQISDHLQVKQTDVVEMNGRIRGDMTLNVQLSDE-EGEQWQDRVADSSPDPETLLV 179 P+QVK I+ L V + DVV+MN R+ GD +LN + D+ E +WQD + D SP+ E ++ Sbjct: 156 PDQVKLIAKRLGVTEQDVVDMNRRLGGDASLNAPIRDDGEPGEWQDWLVDHSPNQEAIMA 215 Query: 180 EAGDRERQKAALSEALCALSPRERTIVEARYMADEQRTLDDLANTFGISRERIRQIEQRA 239 E + + ++AAL+ A+ L+PRER I EAR +ADE TL+DLA FG+SRER+RQIE RA Sbjct: 216 EHEELDHRRAALTGAIGVLNPRERRIFEARRLADEPMTLEDLAAEFGVSRERVRQIEVRA 275 Query: 240 LQRIKSTL 247 ++++S + Sbjct: 276 FEKVQSAV 283 >ref|YP_001758268.1| RNA polymerase factor sigma-32 [Methylobacterium radiotolerans JCM 2831] gb|ACB27585.1| RNA polymerase, sigma 32 subunit, RpoH [Methylobacterium radiotolerans JCM 2831] Length = 297 Score = 295 bits (756), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 141/245 (57%), Positives = 189/245 (77%) Query: 3 ARRLRDAGDSEAAYRLVTSHLRLAAKIALKYRRYGLPIADLISEANVGLMLAVRRFDPEK 62 A+ RDAGD EAA+RLVTSHLRL AKIA+ YR YGLPI +++SE NVGLM AV+RFDP+K Sbjct: 36 AKAWRDAGDREAAHRLVTSHLRLVAKIAMGYRGYGLPIGEVVSEGNVGLMQAVKRFDPDK 95 Query: 63 GFRLATYAAWWIKASVQEFVLRSWSLVKLGTTAAQKKLFFNLQKLKRRLGTPDDGELSPE 122 GFRLATYA WWIKA++QE++LRSWSLVK+GTTA QKKLFFNL+K K ++ D+G+L P+ Sbjct: 96 GFRLATYAMWWIKAAIQEYILRSWSLVKMGTTANQKKLFFNLRKAKGKISALDEGDLKPD 155 Query: 123 QVKQISDHLQVKQTDVVEMNGRIRGDMTLNVQLSDEEGEQWQDRVADSSPDPETLLVEAG 182 QVKQI+ L V + DV++MN R+ GD +LN L +E +WQD + D+SP ET+L Sbjct: 156 QVKQIATRLGVPEQDVIDMNRRLSGDTSLNAPLREEGEGEWQDWLVDNSPSQETVLAREQ 215 Query: 183 DRERQKAALSEALCALSPRERTIVEARYMADEQRTLDDLANTFGISRERIRQIEQRALQR 242 + + + +AL +AL L+PRER I EAR +A++ TL+DL+ FG+SRER+RQIE RA ++ Sbjct: 216 EGQNRLSALKDALGVLNPRERRIFEARRLAEDPITLEDLSGEFGVSRERVRQIEVRAFEK 275 Query: 243 IKSTL 247 ++ + Sbjct: 276 VQEAV 280 >ref|YP_004106573.1| RNA polymerase sigma 32 subunit RpoH [Rhodopseudomonas palustris DX-1] gb|ADU41840.1| RNA polymerase, sigma 32 subunit, RpoH [Rhodopseudomonas palustris DX-1] Length = 299 Score = 295 bits (755), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 143/248 (57%), Positives = 192/248 (77%), Gaps = 1/248 (0%) Query: 1 MYARRLRDAGDSEAAYRLVTSHLRLAAKIALKYRRYGLPIADLISEANVGLMLAVRRFDP 60 M A+R R+ GD +AA++LVTSHLRL AKIA+ YR YGLPI++++SE NVGLM AV+RF+P Sbjct: 36 MLAKRWREHGDRDAAHQLVTSHLRLVAKIAMGYRGYGLPISEVVSEGNVGLMQAVKRFEP 95 Query: 61 EKGFRLATYAAWWIKASVQEFVLRSWSLVKLGTTAAQKKLFFNLQKLKRRLGTPDDGELS 120 EKGFRLATYA WWIKAS+QE++LRSWSLVK+GTTA QKKLFFNL+K K ++ D+G+L Sbjct: 96 EKGFRLATYAMWWIKASIQEYILRSWSLVKMGTTANQKKLFFNLRKAKSKISALDEGDLH 155 Query: 121 PEQVKQISDHLQVKQTDVVEMNGRIRGDMTLNVQLSDE-EGEQWQDRVADSSPDPETLLV 179 P+ VK I+ L V + DVV+MN R+ GD +LN + D+ E +WQD + D SP E +L Sbjct: 156 PDHVKLIASRLGVTEQDVVDMNRRLGGDASLNAPIRDDGEPGEWQDWLVDQSPSQEAVLA 215 Query: 180 EAGDRERQKAALSEALCALSPRERTIVEARYMADEQRTLDDLANTFGISRERIRQIEQRA 239 E + ++++AAL+ A+ L+PRER I EAR +ADE TL+DLA FG+SRER+RQIE RA Sbjct: 216 EHEELDQRRAALNGAIQVLNPRERRIFEARRLADEPMTLEDLAAEFGVSRERVRQIEVRA 275 Query: 240 LQRIKSTL 247 ++++S + Sbjct: 276 FEKVQSAV 283