BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0068.0038.p         (315 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001239348.1| hypothetical protein BBta_3341 [Bradyrhizobi...   111   2e-22
ref|YP_570758.1| hypothetical protein RPD_3634 [Rhodopseudomonas...   103   3e-20
ref|YP_001239326.1| hypothetical protein BBta_3319 [Bradyrhizobi...   101   2e-19
ref|YP_001992781.1| hypothetical protein Rpal_3807 [Rhodopseudom...   100   2e-19
ref|ZP_08627060.1| hypothetical protein CSIRO_0117 [Bradyrhizobi...   100   4e-19

>ref|YP_001239348.1| hypothetical protein BBta_3341 [Bradyrhizobium sp. BTAi1]
 gb|ABQ35442.1| hypothetical protein BBta_3341 [Bradyrhizobium sp. BTAi1]
          Length = 145

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 60/142 (42%), Positives = 80/142 (56%), Gaps = 4/142 (2%)

Query: 112 VTKLTRRRDKEAAREKWSILYRDVVVGSIGLRKGVPNHADQWEWKCGFYPGSD--RSTGG 169
           +T LTRRRD +A  E W I + D+  G+I   KG    +  W+W CGFYPGS     + G
Sbjct: 1   MTALTRRRDSKAPEETWRIYFGDIQAGTIAKNKGSIG-SPAWQWFCGFYPGSHPGEQSVG 59

Query: 170 PAATFDDRRAGFEAAWGALLPTLTEADFQAWRDHRDWIARKQAMWDRGEKLPSQQPSSLM 229
            AA+F + R+ FE+AW A +   +  DF  WR H  + A K AMWD G +LP+Q  S   
Sbjct: 60  TAASFAEARSAFESAWSAFVARRSPGDFDEWRRHEAFTAWKYAMWDAGCRLPTQNTSGRS 119

Query: 230 RCPCGATFDSHRPAESQIHTPH 251
           RC CGA  +  R  E  I++ H
Sbjct: 120 RCFCGAEIEL-RTTEDHIYSTH 140


>ref|YP_570758.1| hypothetical protein RPD_3634 [Rhodopseudomonas palustris BisB5]
 gb|ABE40857.1| hypothetical protein RPD_3634 [Rhodopseudomonas palustris BisB5]
          Length = 149

 Score =  103 bits (258), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 58/113 (51%), Positives = 69/113 (61%), Gaps = 18/113 (15%)

Query: 6   GEALIREADDLLCQSWNEKMWADGGPVDPSPAIDQAINAGYPWLEINCSRCKTPLAVAPS 65
           G+ALIR+AD LLC+SWNE+MWADG PVDPSP IDQA N G+PWL++ CSRC+TP      
Sbjct: 43  GDALIRQADRLLCESWNERMWADGEPVDPSPTIDQATNGGFPWLQVECSRCRTP------ 96

Query: 66  RAAPRSDHQGARSRRPP-------ALREVQRDWQAAGRGAAATVAALPDRRRD 111
                +D   A  RRPP       A R   R     GR  AAT+  L  RRR+
Sbjct: 97  -----NDVDLAALRRPPTTFVHDLASRLRCRKCAQTGRRPAATLLQLAQRRRN 144


>ref|YP_001239326.1| hypothetical protein BBta_3319 [Bradyrhizobium sp. BTAi1]
 gb|ABQ35420.1| hypothetical protein BBta_3319 [Bradyrhizobium sp. BTAi1]
          Length = 149

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/62 (74%), Positives = 51/62 (82%)

Query: 4   AAGEALIREADDLLCQSWNEKMWADGGPVDPSPAIDQAINAGYPWLEINCSRCKTPLAVA 63
           A GEALIR+AD LLC+SWNE+MWA+GGPVDPSP IDQAIN GYPWL I CSRCK    V 
Sbjct: 41  AQGEALIRQADRLLCESWNERMWANGGPVDPSPTIDQAINGGYPWLGIACSRCKARREVD 100

Query: 64  PS 65
           P+
Sbjct: 101 PA 102


>ref|YP_001992781.1| hypothetical protein Rpal_3807 [Rhodopseudomonas palustris TIE-1]
 gb|ACF02306.1| conserved hypothetical protein [Rhodopseudomonas palustris TIE-1]
          Length = 149

 Score =  100 bits (250), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/59 (72%), Positives = 49/59 (83%)

Query: 4  AAGEALIREADDLLCQSWNEKMWADGGPVDPSPAIDQAINAGYPWLEINCSRCKTPLAV 62
          A GEALIR AD LLC+SWNE+MWADGGP+DPSP IDQA+N GY W+EI CSRC+ P  V
Sbjct: 41 AKGEALIRTADKLLCESWNERMWADGGPIDPSPTIDQAVNGGYCWIEIECSRCRAPNEV 99


>ref|ZP_08627060.1| hypothetical protein CSIRO_0117 [Bradyrhizobiaceae bacterium
          SG-6C]
 gb|EGP10340.1| hypothetical protein CSIRO_0117 [Bradyrhizobiaceae bacterium
          SG-6C]
          Length = 149

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 41/56 (73%), Positives = 50/56 (89%)

Query: 4  AAGEALIREADDLLCQSWNEKMWADGGPVDPSPAIDQAINAGYPWLEINCSRCKTP 59
          A GEA+I++AD LLC+SWNE+MW+DG P+DPSP IDQA+N GYPWLEI C+RCKTP
Sbjct: 41 AKGEAMIQQADRLLCESWNERMWSDGEPIDPSPTIDQAVNGGYPWLEIMCARCKTP 96