BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0068.0031.p (205 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_772346.1| 30S ribosomal protein S4 [Bradyrhizobium japoni... 392 e-107 ref|YP_531484.1| 30S ribosomal protein S4 [Rhodopseudomonas palu... 390 e-107 ref|YP_487305.1| 30S ribosomal protein S4 [Rhodopseudomonas palu... 389 e-106 ref|YP_780560.1| 30S ribosomal protein S4 [Rhodopseudomonas palu... 388 e-106 ref|YP_568902.1| 30S ribosomal protein S4 [Rhodopseudomonas palu... 387 e-106 >ref|NP_772346.1| 30S ribosomal protein S4 [Bradyrhizobium japonicum USDA 110] sp|Q89ID3.1|RS4_BRAJA RecName: Full=30S ribosomal protein S4 dbj|BAC50971.1| 30S ribosomal protein S4 [Bradyrhizobium japonicum USDA 110] Length = 205 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 185/205 (90%), Positives = 197/205 (96%) Query: 1 MTKRSEAKYKIDRRMGQNIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 MTKRSEAKYKIDRRMGQNIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG Sbjct: 1 MTKRSEAKYKIDRRMGQNIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYANISERQFHGIYVEASRLKGDTGENLIGLLERRLDTVVYRSKFVSTMFAARQFINHGH 120 YYANISERQFHGIYVEASRLKGDTGENLIGLLERRLD VVYR+KFVST+FAARQFINHGH Sbjct: 61 YYANISERQFHGIYVEASRLKGDTGENLIGLLERRLDAVVYRAKFVSTIFAARQFINHGH 120 Query: 121 IKVNGRKVNIGSYKLKVGDLIEVKESSKQLTPVLEAAQLPERDVPDFIEVDHSKMTAKFA 180 IKVNGRKVNI SY+LKVGD++EVKE+SKQL VLEA+QLPERD PD+++VDH KMTAK+ Sbjct: 121 IKVNGRKVNISSYQLKVGDVVEVKEASKQLAHVLEASQLPERDTPDYLDVDHGKMTAKYI 180 Query: 181 RTPGLSDVPFPVQMEPHLIVEFYSR 205 R PGLSDVPFPVQMEPHL+VEFYSR Sbjct: 181 RIPGLSDVPFPVQMEPHLVVEFYSR 205 >ref|YP_531484.1| 30S ribosomal protein S4 [Rhodopseudomonas palustris BisB18] sp|Q218M1.1|RS4_RHOPB RecName: Full=30S ribosomal protein S4 gb|ABD87165.1| SSU ribosomal protein S4P [Rhodopseudomonas palustris BisB18] Length = 205 Score = 390 bits (1002), Expect = e-107, Method: Compositional matrix adjust. Identities = 187/205 (91%), Positives = 195/205 (95%) Query: 1 MTKRSEAKYKIDRRMGQNIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 MTKRSEAKYKIDRRMGQNIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG Sbjct: 1 MTKRSEAKYKIDRRMGQNIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYANISERQFHGIYVEASRLKGDTGENLIGLLERRLDTVVYRSKFVSTMFAARQFINHGH 120 YYANISERQFH IYVEA+RLKGD+GENLIGLLERRLDTVVYR+KFVSTMFAARQFINHGH Sbjct: 61 YYANISERQFHSIYVEATRLKGDSGENLIGLLERRLDTVVYRAKFVSTMFAARQFINHGH 120 Query: 121 IKVNGRKVNIGSYKLKVGDLIEVKESSKQLTPVLEAAQLPERDVPDFIEVDHSKMTAKFA 180 +KVNG++VNI SYK+KVGDL+EVKESSKQLT VLEA QL ERDVPDFIEVDH KMTAKF Sbjct: 121 VKVNGKRVNIASYKVKVGDLVEVKESSKQLTFVLEANQLAERDVPDFIEVDHGKMTAKFI 180 Query: 181 RTPGLSDVPFPVQMEPHLIVEFYSR 205 R P LSDVPF VQMEPHLIVEFYSR Sbjct: 181 RIPHLSDVPFAVQMEPHLIVEFYSR 205 >ref|YP_487305.1| 30S ribosomal protein S4 [Rhodopseudomonas palustris HaA2] sp|Q2ITR6.1|RS4_RHOP2 RecName: Full=30S ribosomal protein S4 gb|ABD08394.1| SSU ribosomal protein S4P [Rhodopseudomonas palustris HaA2] Length = 205 Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust. Identities = 185/205 (90%), Positives = 196/205 (95%) Query: 1 MTKRSEAKYKIDRRMGQNIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 MTKRSEAKYKIDRRMGQNIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG Sbjct: 1 MTKRSEAKYKIDRRMGQNIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYANISERQFHGIYVEASRLKGDTGENLIGLLERRLDTVVYRSKFVSTMFAARQFINHGH 120 YYANISERQFH IYVEA+RLKGD+GENLIGLLERRLDTVVYR+KFVSTMFAARQFINHGH Sbjct: 61 YYANISERQFHSIYVEATRLKGDSGENLIGLLERRLDTVVYRAKFVSTMFAARQFINHGH 120 Query: 121 IKVNGRKVNIGSYKLKVGDLIEVKESSKQLTPVLEAAQLPERDVPDFIEVDHSKMTAKFA 180 IKVNG++VNI SYK++VGDLIEVKESSKQL VLEA+QL ERDVPD+IEVDH+KMTAKF Sbjct: 121 IKVNGKRVNISSYKVRVGDLIEVKESSKQLAFVLEASQLAERDVPDYIEVDHNKMTAKFG 180 Query: 181 RTPGLSDVPFPVQMEPHLIVEFYSR 205 R P L+DVPF VQMEPHLIVEFYSR Sbjct: 181 RIPALTDVPFAVQMEPHLIVEFYSR 205 >ref|YP_780560.1| 30S ribosomal protein S4 [Rhodopseudomonas palustris BisA53] gb|ABJ05580.1| SSU ribosomal protein S4P [Rhodopseudomonas palustris BisA53] Length = 222 Score = 388 bits (996), Expect = e-106, Method: Compositional matrix adjust. Identities = 184/205 (89%), Positives = 195/205 (95%) Query: 1 MTKRSEAKYKIDRRMGQNIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 MTKRSEAKYKIDRRMGQNIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG Sbjct: 18 MTKRSEAKYKIDRRMGQNIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 77 Query: 61 YYANISERQFHGIYVEASRLKGDTGENLIGLLERRLDTVVYRSKFVSTMFAARQFINHGH 120 YYANISERQFH IYVEA+RLKGD+GENLIGLLERRLDTVVYR+KFV+TMFAARQFINHGH Sbjct: 78 YYANISERQFHAIYVEATRLKGDSGENLIGLLERRLDTVVYRAKFVATMFAARQFINHGH 137 Query: 121 IKVNGRKVNIGSYKLKVGDLIEVKESSKQLTPVLEAAQLPERDVPDFIEVDHSKMTAKFA 180 +KVNG++VNI SYK+KVGDLIEVKESSKQL VLEA+QL ERD PD++EVDHSKMTAKF Sbjct: 138 VKVNGKRVNISSYKVKVGDLIEVKESSKQLAFVLEASQLGERDTPDYVEVDHSKMTAKFI 197 Query: 181 RTPGLSDVPFPVQMEPHLIVEFYSR 205 R P LSDVPF VQMEPHLIVEFYSR Sbjct: 198 RVPHLSDVPFAVQMEPHLIVEFYSR 222 >ref|YP_568902.1| 30S ribosomal protein S4 [Rhodopseudomonas palustris BisB5] sp|Q13A88.1|RS4_RHOPS RecName: Full=30S ribosomal protein S4 gb|ABE39001.1| SSU ribosomal protein S4P [Rhodopseudomonas palustris BisB5] Length = 205 Score = 387 bits (995), Expect = e-106, Method: Compositional matrix adjust. Identities = 184/205 (89%), Positives = 195/205 (95%) Query: 1 MTKRSEAKYKIDRRMGQNIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 MTKRSEAKYKIDRRMGQNIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG Sbjct: 1 MTKRSEAKYKIDRRMGQNIWGRPKSPVNRREYGPGQHGQRRKGKLSDFGVQLRAKQKLKG 60 Query: 61 YYANISERQFHGIYVEASRLKGDTGENLIGLLERRLDTVVYRSKFVSTMFAARQFINHGH 120 YYANISERQFH IYVEA+RLKGD+GENLIGLLERRLDTVVYRSKFVSTMFAARQFINHGH Sbjct: 61 YYANISERQFHAIYVEATRLKGDSGENLIGLLERRLDTVVYRSKFVSTMFAARQFINHGH 120 Query: 121 IKVNGRKVNIGSYKLKVGDLIEVKESSKQLTPVLEAAQLPERDVPDFIEVDHSKMTAKFA 180 IKVNG++VNI SYK++VGD+IEVKE+SKQL VLEA QL ERDVPD+I+VDH+KMTAKF Sbjct: 121 IKVNGKRVNISSYKVRVGDVIEVKEASKQLAIVLEANQLAERDVPDYIDVDHNKMTAKFG 180 Query: 181 RTPGLSDVPFPVQMEPHLIVEFYSR 205 R P LSDVPF VQMEPHLIVEFYSR Sbjct: 181 RIPALSDVPFAVQMEPHLIVEFYSR 205