BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0068.0029.p         (129 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_531486.1| cupin 2 barrel domain-containing protein [Rhodo...   166   1e-39
ref|YP_487301.1| cupin region [Rhodopseudomonas palustris HaA2] ...   161   4e-38
ref|YP_568904.1| cupin 2 barrel domain-containing protein [Rhodo...   160   5e-38
ref|YP_780563.1| cupin 2 domain-containing protein [Rhodopseudom...   160   5e-38
ref|YP_001204847.1| hypothetical protein BRADO2800 [Bradyrhizobi...   156   1e-36

>ref|YP_531486.1| cupin 2 barrel domain-containing protein [Rhodopseudomonas
           palustris BisB18]
 gb|ABD87167.1| Cupin 2, conserved barrel [Rhodopseudomonas palustris BisB18]
          Length = 127

 Score =  166 bits (419), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 80/128 (62%), Positives = 101/128 (78%), Gaps = 1/128 (0%)

Query: 2   FRKLLIGLAVIALAGAGAAFAQQSGIKRTPLQKVDFPPGFNTVTAIAEVPAGGASGRHTH 61
            +++++GL  +ALAG G A AQQ+GIKRTPLQKV+FP G+ T+T IAE+P GG++GRHTH
Sbjct: 1   MKRIVLGLLTVALAG-GLALAQQAGIKRTPLQKVEFPEGYVTITGIAEIPPGGSAGRHTH 59

Query: 62  PGAETGYVLEGELELLIDGKPPLKLKAGESYQIPEGAVHDAKTSGDKPLKVLGVYVVKAG 121
           PG ETGY+LEGE ++LIDG+P   LKAG+SY IP G VHDAK  GDK  KV+ +YVV   
Sbjct: 60  PGVETGYLLEGETDMLIDGQPTQHLKAGDSYAIPAGVVHDAKVHGDKSAKVIAIYVVDKT 119

Query: 122 EPLAKPAP 129
           +PLA PAP
Sbjct: 120 KPLASPAP 127


>ref|YP_487301.1| cupin region [Rhodopseudomonas palustris HaA2]
 gb|ABD08390.1| Cupin region [Rhodopseudomonas palustris HaA2]
          Length = 127

 Score =  161 bits (407), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 83/129 (64%), Positives = 98/129 (75%), Gaps = 2/129 (1%)

Query: 1   MFRKLLIGLAVIALAGAGAAFAQQSGIKRTPLQKVDFPPGFNTVTAIAEVPAGGASGRHT 60
           M +  LI LA +ALAGA  AFAQQSGIKRTPLQKV+FP GF T++ +AE+PAGG+ GRHT
Sbjct: 1   MTKTTLIALAFVALAGA--AFAQQSGIKRTPLQKVEFPDGFVTISGLAELPAGGSIGRHT 58

Query: 61  HPGAETGYVLEGELELLIDGKPPLKLKAGESYQIPEGAVHDAKTSGDKPLKVLGVYVVKA 120
           HPG ETGY+LEGE  + IDG+    LKAG+SY IP G VHDA+  GDK  KVL V+VV  
Sbjct: 59  HPGIETGYLLEGEAVMSIDGQADKHLKAGDSYAIPAGVVHDARVHGDKGAKVLAVWVVDK 118

Query: 121 GEPLAKPAP 129
            +PLA PAP
Sbjct: 119 TKPLATPAP 127


>ref|YP_568904.1| cupin 2 barrel domain-containing protein [Rhodopseudomonas
           palustris BisB5]
 gb|ABE39003.1| Cupin 2, conserved barrel [Rhodopseudomonas palustris BisB5]
          Length = 127

 Score =  160 bits (406), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 81/129 (62%), Positives = 98/129 (75%), Gaps = 2/129 (1%)

Query: 1   MFRKLLIGLAVIALAGAGAAFAQQSGIKRTPLQKVDFPPGFNTVTAIAEVPAGGASGRHT 60
           M RK+LI L + A+AG   AFAQQSGIKRTPLQKV+FP G+ TV+ +AE+P+GG+ GRHT
Sbjct: 1   MTRKILIALTIAAIAGT--AFAQQSGIKRTPLQKVEFPEGYVTVSGLAELPSGGSIGRHT 58

Query: 61  HPGAETGYVLEGELELLIDGKPPLKLKAGESYQIPEGAVHDAKTSGDKPLKVLGVYVVKA 120
           HPG ETGY+LEGE  + IDG+    LKAG+SY IP G VHDAK  GDK  KV+ V+VV  
Sbjct: 59  HPGIETGYLLEGEAVMSIDGQADKHLKAGDSYSIPAGVVHDAKAHGDKGAKVMAVWVVDK 118

Query: 121 GEPLAKPAP 129
            +PLA PAP
Sbjct: 119 TKPLATPAP 127


>ref|YP_780563.1| cupin 2 domain-containing protein [Rhodopseudomonas palustris
           BisA53]
 gb|ABJ05583.1| Cupin 2, conserved barrel domain protein [Rhodopseudomonas
           palustris BisA53]
          Length = 126

 Score =  160 bits (405), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 81/128 (63%), Positives = 99/128 (77%), Gaps = 2/128 (1%)

Query: 2   FRKLLIGLAVIALAGAGAAFAQQSGIKRTPLQKVDFPPGFNTVTAIAEVPAGGASGRHTH 61
            ++L++GL V+A AGA  A AQQ GIKRTPLQKV+FP G+ TVT IAE+PAGG++GRHTH
Sbjct: 1   MKRLVLGLIVVAFAGA--ALAQQPGIKRTPLQKVEFPDGYVTVTGIAEIPAGGSAGRHTH 58

Query: 62  PGAETGYVLEGELELLIDGKPPLKLKAGESYQIPEGAVHDAKTSGDKPLKVLGVYVVKAG 121
           PG ETGY+LEGE  + IDG+P   +KAGESY IP   VHDAK  GDK  KV+ V+VV   
Sbjct: 59  PGIETGYILEGEAIMSIDGQPDRLVKAGESYAIPAFVVHDAKVHGDKSAKVMAVWVVDKT 118

Query: 122 EPLAKPAP 129
           +PLA+PAP
Sbjct: 119 KPLAQPAP 126


>ref|YP_001204847.1| hypothetical protein BRADO2800 [Bradyrhizobium sp. ORS 278]
 emb|CAL76610.1| conserved hypothetical protein; putative RmlC-like cupin domain
           [Bradyrhizobium sp. ORS 278]
          Length = 127

 Score =  156 bits (394), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 80/128 (62%), Positives = 95/128 (74%), Gaps = 1/128 (0%)

Query: 2   FRKLLIGLAVIALAGAGAAFAQQSGIKRTPLQKVDFPPGFNTVTAIAEVPAGGASGRHTH 61
            +K + GL+ +A+ G GAA AQQ  IKRT L K DFP G   V AIAEVPAGGA+GRHTH
Sbjct: 1   MKKTIFGLS-LAVLGLGAALAQQPAIKRTMLNKTDFPDGHTIVQAIAEVPAGGAAGRHTH 59

Query: 62  PGAETGYVLEGELELLIDGKPPLKLKAGESYQIPEGAVHDAKTSGDKPLKVLGVYVVKAG 121
           PG ET Y+LEGE +L+++G+P   LK G+S+QIP G VHDAK  GDK LKVLGVYVV   
Sbjct: 60  PGVETAYILEGEADLIVEGQPDRHLKPGDSFQIPAGVVHDAKVHGDKGLKVLGVYVVDKT 119

Query: 122 EPLAKPAP 129
           +PLA PAP
Sbjct: 120 KPLASPAP 127