BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0068.0023.p (338 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_04560763.1| porphyromonas-type peptidyl-arginine deiminas... 484 e-135 ref|NP_902928.1| hypothetical protein CV_3258 [Chromobacterium v... 468 e-130 ref|YP_004488984.1| Agmatine deiminase [Delftia sp. Cs1-4] >gi|3... 466 e-129 ref|YP_368998.1| peptidyl-arginine deiminase [Burkholderia sp. 3... 461 e-128 emb|CBA28238.1| Putative agmatine deiminase [Curvibacter putativ... 454 e-125 >ref|ZP_04560763.1| porphyromonas-type peptidyl-arginine deiminase [Citrobacter sp. 30_2] gb|EEH91739.1| porphyromonas-type peptidyl-arginine deiminase [Citrobacter sp. 30_2] Length = 353 Score = 484 bits (1247), Expect = e-135, Method: Compositional matrix adjust. Identities = 240/337 (71%), Positives = 276/337 (81%), Gaps = 8/337 (2%) Query: 1 MPDEGAPHAATWMAFGADVELWGTKLLPVIRNNLASVAKAIAVHEPVKMLVREEDYDIAA 60 MPDEGAPHAATWMAFGA E+W LLPV++ NLA VAK IA EPV MLVREED ++AA Sbjct: 25 MPDEGAPHAATWMAFGASAEIWEPHLLPVVQENLALVAKTIAAFEPVNMLVREEDSELAA 84 Query: 61 RLCGPSVSLVVQPLDDVWLRDTGPVFVTNPAGQLGAVGFNFNGWGNKPQPYARKQHLYAR 120 RLCGPSV+L+V P+DD+W+RDTGPVFV + +G LG VGFNFNGWGNK + + R Sbjct: 85 RLCGPSVNLLVHPIDDLWIRDTGPVFVKSASGTLGGVGFNFNGWGNKQE--------HER 136 Query: 121 DAEVAEHLAGAAQAIFLKADLVLEGGGMKVDGEGTAIITESCVLNPNRNPGVSKDKCEAE 180 DA+VAE + A F+++ L LEGGG++VDGEGTAIITESCVLN NRNPGVSK +CE E Sbjct: 137 DADVAEFVTDYVHAEFIRSVLTLEGGGIEVDGEGTAIITESCVLNSNRNPGVSKAECEEE 196 Query: 181 LSRLLGLDKIIWLPGIAGKDITDGHTDFYARFASPGVVVAGLEPDPSSFDHAVTKRHLDF 240 L RLLGL+KIIWLPGIAGKDITDGHTDFYARF PG VVAGLE DPSSFD+A+T+RHLD Sbjct: 197 LKRLLGLEKIIWLPGIAGKDITDGHTDFYARFTHPGTVVAGLEQDPSSFDYAITRRHLDI 256 Query: 241 LRVAVDAKGRRLDVVVLQGPSTVRPNHSSKDFAAGYINFYVCNGAVLAPEFGDPAADRNA 300 LR A DAKGRRL+VV L+GPST+R ++S DFAAGYINFY+CN AV+AP+FGD DRN Sbjct: 257 LRAATDAKGRRLEVVTLEGPSTIRQTYASDDFAAGYINFYLCNDAVIAPQFGDKRTDRNT 316 Query: 301 RDKLRELYPDREIIQLNIDGIAAGGGGIHCTTQQQPR 337 L+EL+ DREIIQLNIDGIAAGGGGIHC TQQQPR Sbjct: 317 HTILQELFADREIIQLNIDGIAAGGGGIHCATQQQPR 353 >ref|NP_902928.1| hypothetical protein CV_3258 [Chromobacterium violaceum ATCC 12472] gb|AAQ60922.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 329 Score = 468 bits (1204), Expect = e-130, Method: Compositional matrix adjust. Identities = 224/336 (66%), Positives = 265/336 (78%), Gaps = 8/336 (2%) Query: 1 MPDEGAPHAATWMAFGADVELWGTKLLPVIRNNLASVAKAIAVHEPVKMLVREEDYDIAA 60 MPDEGAPHAATWMAFG + +WG +LLP +R +LA VA AIA EPV+ML RE + D+A Sbjct: 1 MPDEGAPHAATWMAFGPSLSVWGARLLPEVRRDLARVASAIAAFEPVRMLARENELDLAG 60 Query: 61 RLCGPSVSLVVQPLDDVWLRDTGPVFVTNPAGQLGAVGFNFNGWGNKPQPYARKQHLYAR 120 RLCG V LV QPLDD+W+RD+GPVFV AG + AV FNFNGWG K + R Sbjct: 61 RLCGSGVELVAQPLDDLWIRDSGPVFVKTGAGGMAAVDFNFNGWGGK--------QAHGR 112 Query: 121 DAEVAEHLAGAAQAIFLKADLVLEGGGMKVDGEGTAIITESCVLNPNRNPGVSKDKCEAE 180 DA VA +AG A A+ L++ LVLEGGG++VDGEGTAIITESCVLN NRNPG SK +CE E Sbjct: 113 DARVAGFVAGRAGALPLRSGLVLEGGGIEVDGEGTAIITESCVLNANRNPGWSKAQCEGE 172 Query: 181 LSRLLGLDKIIWLPGIAGKDITDGHTDFYARFASPGVVVAGLEPDPSSFDHAVTKRHLDF 240 L R+LG++K+IWLPG+AG+DITDGHTDFYARFA PGVVVAGLE DP+S+D+ VT+RHL Sbjct: 173 LRRVLGVEKVIWLPGVAGRDITDGHTDFYARFARPGVVVAGLETDPASYDYQVTRRHLAM 232 Query: 241 LRVAVDAKGRRLDVVVLQGPSTVRPNHSSKDFAAGYINFYVCNGAVLAPEFGDPAADRNA 300 LR A DA+GR+L+VV + GP VRP + + AAGYINFYVCNGAV+A EFGD ADRNA Sbjct: 233 LRQARDARGRKLEVVAIPGPDRVRPEYEDDEMAAGYINFYVCNGAVIALEFGDARADRNA 292 Query: 301 RDKLRELYPDREIIQLNIDGIAAGGGGIHCTTQQQP 336 R LREL+P+RE++QLNID IAAGGGGIHC TQQQP Sbjct: 293 RSALRELFPEREVVQLNIDAIAAGGGGIHCATQQQP 328 >ref|YP_004488984.1| Agmatine deiminase [Delftia sp. Cs1-4] gb|AEF90629.1| Agmatine deiminase [Delftia sp. Cs1-4] Length = 385 Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust. Identities = 227/344 (65%), Positives = 270/344 (78%), Gaps = 15/344 (4%) Query: 1 MPDEGAPHAATWMAFGADVELWGTKLLPVIRNNLASVAKAIAVHEPVKMLVREEDYDIAA 60 MPDEG PH +TWM+FG ++WG +LL R +LA +A+AIA EPV MLVRE DYD+AA Sbjct: 50 MPDEGDPHQSTWMSFGPSEKVWGRRLLEPAREHLAGIARAIAAFEPVNMLVRERDYDLAA 109 Query: 61 RLCGPSVSLVVQPLDDVWLRDTGPVFVT-------NPAGQLGAVGFNFNGWGNKPQPYAR 113 RLCG V L VQP+DD+W+RDTGPVFV + G+L V FNFNGWG+K Sbjct: 110 RLCGNRVKLHVQPVDDLWMRDTGPVFVRQLGSGTGSSKGELAGVDFNFNGWGDK------ 163 Query: 114 KQHLYARDAEVAEHLAGAAQAIFLKADLVLEGGGMKVDGEGTAIITESCVLNPNRNPGVS 173 + DAEVA + AA +L+ +LVLEGGG++VDG+GTA+ITESCVLNPNRNPG+S Sbjct: 164 --QAHDNDAEVAGFVTEAANVRYLETELVLEGGGIEVDGQGTALITESCVLNPNRNPGLS 221 Query: 174 KDKCEAELSRLLGLDKIIWLPGIAGKDITDGHTDFYARFASPGVVVAGLEPDPSSFDHAV 233 K CEAEL RLLGL KIIWLPGIAG+DITDGHTDFYARFASPGVVVAGL+ DP S+D+AV Sbjct: 222 KSACEAELKRLLGLRKIIWLPGIAGRDITDGHTDFYARFASPGVVVAGLDDDPDSYDYAV 281 Query: 234 TKRHLDFLRVAVDAKGRRLDVVVLQGPSTVRPNHSSKDFAAGYINFYVCNGAVLAPEFGD 293 T+RHLD LR A DA+G++L V VL+GPS+VR S++FAAGYINFYVCNGAV+AP+FGD Sbjct: 282 TRRHLDILRQATDARGQKLSVQVLKGPSSVRSKLESREFAAGYINFYVCNGAVIAPQFGD 341 Query: 294 PAADRNARDKLRELYPDREIIQLNIDGIAAGGGGIHCTTQQQPR 337 AD NAR LREL+P RE++QL+ID IAAGGGGIHCTTQQQPR Sbjct: 342 ARADANARSLLRELFPRREVVQLDIDAIAAGGGGIHCTTQQQPR 385 >ref|YP_368998.1| peptidyl-arginine deiminase [Burkholderia sp. 383] gb|ABB08354.1| agmatine deiminase [Burkholderia sp. 383] Length = 370 Score = 461 bits (1185), Expect = e-128, Method: Compositional matrix adjust. Identities = 239/336 (71%), Positives = 275/336 (81%), Gaps = 8/336 (2%) Query: 1 MPDEGAPHAATWMAFGADVELWGTKLLPVIRNNLASVAKAIAVHEPVKMLVREEDYDIAA 60 MPDEGAPH ATWMAFG ++WG +LLPV R NLA++AKAIA HEP+KMLVRE+DY IA+ Sbjct: 42 MPDEGAPHTATWMAFGPSEDIWGARLLPVARANLAAIAKAIAAHEPLKMLVREQDYAIAS 101 Query: 61 RLCGPSVSLVVQPLDDVWLRDTGPVFVTNPAGQLGAVGFNFNGWGNKPQPYARKQHLYAR 120 RLCG SV LV P+DD+W+RDTGPVFV N +GQLG V FNFNGWGNK + + + Sbjct: 102 RLCGSSVELVQHPVDDLWMRDTGPVFVKNASGQLGGVSFNFNGWGNKQE--------HDQ 153 Query: 121 DAEVAEHLAGAAQAIFLKADLVLEGGGMKVDGEGTAIITESCVLNPNRNPGVSKDKCEAE 180 DAEVA +A A A L LVLEGGG++VDGEGTAIIT SCVLN NRNPGV + +CEAE Sbjct: 154 DAEVAPFVAERAGARLLDTRLVLEGGGIEVDGEGTAIITRSCVLNSNRNPGVGQAQCEAE 213 Query: 181 LSRLLGLDKIIWLPGIAGKDITDGHTDFYARFASPGVVVAGLEPDPSSFDHAVTKRHLDF 240 LSRLLGL KIIWLPGIAGKDITDGHTDFYARF SPGVVVAGL+ DPSS+DHAVT++HL+ Sbjct: 214 LSRLLGLKKIIWLPGIAGKDITDGHTDFYARFTSPGVVVAGLDTDPSSYDHAVTRQHLEI 273 Query: 241 LRVAVDAKGRRLDVVVLQGPSTVRPNHSSKDFAAGYINFYVCNGAVLAPEFGDPAADRNA 300 LR + DAKGR L VVVL GP +VR + +++FAAGYINFYVCN AV+AP+FGD ADRN Sbjct: 274 LRKSTDAKGRPLKVVVLPGPKSVRHQYENEEFAAGYINFYVCNRAVIAPQFGDSRADRNT 333 Query: 301 RDKLRELYPDREIIQLNIDGIAAGGGGIHCTTQQQP 336 RD L +L+P RE+IQLNIDGIAAGGGGIHCTTQQQP Sbjct: 334 RDTLVDLFPGREVIQLNIDGIAAGGGGIHCTTQQQP 369 >emb|CBA28238.1| Putative agmatine deiminase [Curvibacter putative symbiont of Hydra magnipapillata] Length = 383 Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust. Identities = 221/337 (65%), Positives = 260/337 (77%), Gaps = 9/337 (2%) Query: 1 MPDEGAPHAATWMAFGADVELWGTKLLPVIRNNLASVAKAIAVHEPVKMLVREEDYDIAA 60 MPDE PHA TWMAFGA +++WG KLLP ++ LA++A +IA EPV MLVR D A+ Sbjct: 53 MPDEAEPHARTWMAFGAHLDIWGRKLLPAVQQGLANIAMSIARFEPVSMLVRPNDMARAS 112 Query: 61 RLC-GPSVSLVVQPLDDVWLRDTGPVFVTNPAGQLGAVGFNFNGWGNKPQPYARKQHLYA 119 L G V L+ Q +DD W+RD+GPVFVTN GQ AV FNFNGWG K + + Sbjct: 113 ELLKGSRVELIDQMVDDFWVRDSGPVFVTNHQGQKAAVDFNFNGWGKKQK--------HP 164 Query: 120 RDAEVAEHLAGAAQAIFLKADLVLEGGGMKVDGEGTAIITESCVLNPNRNPGVSKDKCEA 179 DA+VA +A A LK LVLEGGG++VDG GTAIITESCVLN NRNPGVSK CEA Sbjct: 165 HDAKVAAFVADRAGVARLKTSLVLEGGGIEVDGHGTAIITESCVLNANRNPGVSKTDCEA 224 Query: 180 ELSRLLGLDKIIWLPGIAGKDITDGHTDFYARFASPGVVVAGLEPDPSSFDHAVTKRHLD 239 EL RLLGL+KI+WLPGI GKDITDGHTDFYARFA+PGVVVAG + DP+S+DHAVTKRHL+ Sbjct: 225 ELKRLLGLEKILWLPGIKGKDITDGHTDFYARFAAPGVVVAGYDTDPASYDHAVTKRHLN 284 Query: 240 FLRVAVDAKGRRLDVVVLQGPSTVRPNHSSKDFAAGYINFYVCNGAVLAPEFGDPAADRN 299 LR D +G +LDVVV++GP TVR ++ KDFAAGYINFYVCNGAV+APEFGD AD N Sbjct: 285 LLREMTDTRGNKLDVVVIEGPETVRERYAGKDFAAGYINFYVCNGAVIAPEFGDKKADAN 344 Query: 300 ARDKLRELYPDREIIQLNIDGIAAGGGGIHCTTQQQP 336 ARD L++L+P RE +QLNIDG+AAGGGGIHCTTQQ+P Sbjct: 345 ARDTLKDLFPKRETVQLNIDGVAAGGGGIHCTTQQEP 381