BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0068.0006.p (372 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001241213.1| high-affinity branched-chain amino acid ABC ... 681 0.0 ref|YP_531499.1| extracellular ligand-binding receptor [Rhodopse... 678 0.0 ref|YP_001204894.1| high-affinity branched-chain amino acid ABC ... 676 0.0 ref|YP_780576.1| extracellular ligand-binding receptor [Rhodopse... 671 0.0 ref|YP_487291.1| extracellular ligand-binding receptor [Rhodopse... 671 0.0 >ref|YP_001241213.1| high-affinity branched-chain amino acid ABC transporter substrate-binding protein [Bradyrhizobium sp. BTAi1] gb|ABQ37307.1| amino acid/amide ABC transporter substrate-binding protein, HAAT family [Bradyrhizobium sp. BTAi1] Length = 372 Score = 681 bits (1756), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/372 (87%), Positives = 350/372 (94%) Query: 1 MKSLKLIGLALGASFAFSASAFAQDITIAVAGPMTGSESAFGRQMKNGAEQAVADINAAG 60 MK LKLIGLALGAS A S +A+A+DITIAVAGPMTG ESAFGRQM+NGAE A+AD+NAAG Sbjct: 1 MKPLKLIGLALGASLALSTAAYAEDITIAVAGPMTGGESAFGRQMQNGAEMAIADLNAAG 60 Query: 61 GVLGKKLALEADDDACDPKQARSIAEKIGSSKIPFVAGHFCSSSSIPASEAYADANVLQI 120 GVLGKKLAL+ DDACDPKQARS+AEK+ S IPFVAGHFCSSSSIPASEAYAD+NVLQI Sbjct: 61 GVLGKKLALQVGDDACDPKQARSVAEKLAGSGIPFVAGHFCSSSSIPASEAYADSNVLQI 120 Query: 121 TPASTNPLFTERKLWNVARVCGRDDQQGLVAADYIMKNYKGKNVAILNDKTTYGKGLADE 180 TPASTNPLFTERKLWNVARVCGRDDQQGLVAA+YI KN+KGKN+AILNDKTTYGKGLADE Sbjct: 121 TPASTNPLFTERKLWNVARVCGRDDQQGLVAANYIAKNFKGKNIAILNDKTTYGKGLADE 180 Query: 181 TKKALNKAGFQEKMFESYNKGDKDFNSIVSRLKRDNIDLVYVGGYHQEAGLILRQMREQG 240 TKKALNKAG EKMFESYNKGDKDFN+IVSRLKR+NIDLVYVGGYHQEAGLILRQMR+QG Sbjct: 181 TKKALNKAGVTEKMFESYNKGDKDFNAIVSRLKRENIDLVYVGGYHQEAGLILRQMRDQG 240 Query: 241 LQTVLMAGDAMNDKEFASITGPAAEGTLFTFGPDPRNKPTAKAIVEKFKAKNIDPEGYTL 300 L+T+LMAGDAMNDKEFASITGPAAEGTLFTFGP+PRNKPTAKAIV+KFKAKNIDPEGYTL Sbjct: 241 LKTILMAGDAMNDKEFASITGPAAEGTLFTFGPEPRNKPTAKAIVDKFKAKNIDPEGYTL 300 Query: 301 YTYAAMQVWTQAVAKAGSTDAKKVMDTIKAGEWDTVLGKMAFDAKGDIKAIDYVVYKWDA 360 YTYAA+QVW+QAV KA +TDAKKVMDTIKAGEWDTVLGK+ FDAKGDIK IDYVVYKWDA Sbjct: 301 YTYAAIQVWSQAVKKANTTDAKKVMDTIKAGEWDTVLGKLGFDAKGDIKQIDYVVYKWDA 360 Query: 361 KGNYTEINPKGS 372 KG Y E+ KGS Sbjct: 361 KGGYAELGSKGS 372 >ref|YP_531499.1| extracellular ligand-binding receptor [Rhodopseudomonas palustris BisB18] gb|ABD87180.1| Extracellular ligand-binding receptor [Rhodopseudomonas palustris BisB18] Length = 371 Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust. Identities = 323/369 (87%), Positives = 343/369 (92%) Query: 1 MKSLKLIGLALGASFAFSASAFAQDITIAVAGPMTGSESAFGRQMKNGAEQAVADINAAG 60 MK LKLIGLA GAS A S +A AQDIT+AVAGPMTGSESAFGRQ++NGAEQAV D+NAAG Sbjct: 1 MKPLKLIGLAFGASLALSTTALAQDITVAVAGPMTGSESAFGRQLQNGAEQAVVDLNAAG 60 Query: 61 GVLGKKLALEADDDACDPKQARSIAEKIGSSKIPFVAGHFCSSSSIPASEAYADANVLQI 120 GVLGKKLAL+ DD CDPKQARS+AEKI SKIPFVAGHFCSSSSIPASEAYA+ NVLQI Sbjct: 61 GVLGKKLALQVGDDGCDPKQARSVAEKIAGSKIPFVAGHFCSSSSIPASEAYAEGNVLQI 120 Query: 121 TPASTNPLFTERKLWNVARVCGRDDQQGLVAADYIMKNYKGKNVAILNDKTTYGKGLADE 180 TP STNPLFTERKLWNV RVCGRDDQQGLVAADYI+KNYKGKNVAILNDKTTYGKGLADE Sbjct: 121 TPGSTNPLFTERKLWNVLRVCGRDDQQGLVAADYIVKNYKGKNVAILNDKTTYGKGLADE 180 Query: 181 TKKALNKAGFQEKMFESYNKGDKDFNSIVSRLKRDNIDLVYVGGYHQEAGLILRQMREQG 240 TKKALNKAGF E MFESYNKGDKDFNSIVSRLKR+NIDLV+VGGYHQEAGLILRQMR+QG Sbjct: 181 TKKALNKAGFTEAMFESYNKGDKDFNSIVSRLKRENIDLVFVGGYHQEAGLILRQMRDQG 240 Query: 241 LQTVLMAGDAMNDKEFASITGPAAEGTLFTFGPDPRNKPTAKAIVEKFKAKNIDPEGYTL 300 L+TVLMAGDAMND+EFASITGP AEGTLFTFGPDPRNKPTAKAIVEKFKAKNIDPEGYTL Sbjct: 241 LKTVLMAGDAMNDREFASITGPLAEGTLFTFGPDPRNKPTAKAIVEKFKAKNIDPEGYTL 300 Query: 301 YTYAAMQVWTQAVAKAGSTDAKKVMDTIKAGEWDTVLGKMAFDAKGDIKAIDYVVYKWDA 360 YTYAA Q+W++A KAG+TD KKVM IKAGEWDTVLGK++FDAKGDIK IDYVVYKWDA Sbjct: 301 YTYAAFQIWSEAAKKAGTTDPKKVMAAIKAGEWDTVLGKLSFDAKGDIKLIDYVVYKWDA 360 Query: 361 KGNYTEINP 369 KGNY EINP Sbjct: 361 KGNYAEINP 369 >ref|YP_001204894.1| high-affinity branched-chain amino acid ABC transporter substrate-binding protein [Bradyrhizobium sp. ORS 278] emb|CAL76657.1| high-affinity branched-chain amino acid ABC transporter (substrate-binding protein) [Bradyrhizobium sp. ORS 278] Length = 372 Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust. Identities = 322/367 (87%), Positives = 347/367 (94%) Query: 1 MKSLKLIGLALGASFAFSASAFAQDITIAVAGPMTGSESAFGRQMKNGAEQAVADINAAG 60 MK LKLIGLALGA+ A S +A+A+DITIAVAGPMTG ESAFGRQM+NGAE A+AD+NAAG Sbjct: 1 MKPLKLIGLALGATLALSTAAYAEDITIAVAGPMTGGESAFGRQMQNGAEMAIADLNAAG 60 Query: 61 GVLGKKLALEADDDACDPKQARSIAEKIGSSKIPFVAGHFCSSSSIPASEAYADANVLQI 120 GVLGKKLAL+ DDACDPKQARS+AEK+ S IPFVAGHFCSSSSIPASEAYAD+NVLQI Sbjct: 61 GVLGKKLALQVGDDACDPKQARSVAEKLAGSGIPFVAGHFCSSSSIPASEAYADSNVLQI 120 Query: 121 TPASTNPLFTERKLWNVARVCGRDDQQGLVAADYIMKNYKGKNVAILNDKTTYGKGLADE 180 TPASTNPLFTERKLWNVARVCGRDDQQGLVAA+YI KN+KGKN+AILNDKTTYGKGLADE Sbjct: 121 TPASTNPLFTERKLWNVARVCGRDDQQGLVAANYIAKNFKGKNIAILNDKTTYGKGLADE 180 Query: 181 TKKALNKAGFQEKMFESYNKGDKDFNSIVSRLKRDNIDLVYVGGYHQEAGLILRQMREQG 240 TKKALNKAG EKMFESYNKGDKDFN+IVSRLKR+NIDLVYVGGYHQEAGLILRQMR+QG Sbjct: 181 TKKALNKAGVTEKMFESYNKGDKDFNAIVSRLKRENIDLVYVGGYHQEAGLILRQMRDQG 240 Query: 241 LQTVLMAGDAMNDKEFASITGPAAEGTLFTFGPDPRNKPTAKAIVEKFKAKNIDPEGYTL 300 L+T+LMAGDAMNDKEFASITGPAAEGTLFTFGP+PRNKPTAKAIVEKFKAKNIDPEGYTL Sbjct: 241 LKTILMAGDAMNDKEFASITGPAAEGTLFTFGPEPRNKPTAKAIVEKFKAKNIDPEGYTL 300 Query: 301 YTYAAMQVWTQAVAKAGSTDAKKVMDTIKAGEWDTVLGKMAFDAKGDIKAIDYVVYKWDA 360 YTYAA+QVW+QAV KA +TDAKKVMDTIKAGEWDTVLGK+ FDAKGDIK IDYVVYKWDA Sbjct: 301 YTYAAIQVWSQAVKKANTTDAKKVMDTIKAGEWDTVLGKLGFDAKGDIKQIDYVVYKWDA 360 Query: 361 KGNYTEI 367 KG Y E+ Sbjct: 361 KGGYAEL 367 >ref|YP_780576.1| extracellular ligand-binding receptor [Rhodopseudomonas palustris BisA53] gb|ABJ05596.1| Extracellular ligand-binding receptor [Rhodopseudomonas palustris BisA53] Length = 373 Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust. Identities = 320/369 (86%), Positives = 339/369 (91%) Query: 1 MKSLKLIGLALGASFAFSASAFAQDITIAVAGPMTGSESAFGRQMKNGAEQAVADINAAG 60 MK LKLI LA GAS S +A AQDI++AVAGPMTGSESAFGRQM NGAEQAV D+NAAG Sbjct: 1 MKPLKLISLAFGASLLLSTTALAQDISVAVAGPMTGSESAFGRQMANGAEQAVVDLNAAG 60 Query: 61 GVLGKKLALEADDDACDPKQARSIAEKIGSSKIPFVAGHFCSSSSIPASEAYADANVLQI 120 GVLGKKLAL+ DD CDPKQARSIAEK+ + K FVAGHFCSSSSIPASEAYAD NVLQI Sbjct: 61 GVLGKKLALQTGDDGCDPKQARSIAEKLSNGKTQFVAGHFCSSSSIPASEAYADGNVLQI 120 Query: 121 TPASTNPLFTERKLWNVARVCGRDDQQGLVAADYIMKNYKGKNVAILNDKTTYGKGLADE 180 TPASTNPLFTERKLWNV R+CGRDDQQGLVAADYI KN+KGKNVAILNDKTTYGKGLADE Sbjct: 121 TPASTNPLFTERKLWNVLRICGRDDQQGLVAADYIAKNFKGKNVAILNDKTTYGKGLADE 180 Query: 181 TKKALNKAGFQEKMFESYNKGDKDFNSIVSRLKRDNIDLVYVGGYHQEAGLILRQMREQG 240 TKKALNKAGF+E MFESYNKGDKDFNSIVSRLKRDNIDLVY+GGYHQEAGLILRQMR+QG Sbjct: 181 TKKALNKAGFKETMFESYNKGDKDFNSIVSRLKRDNIDLVYIGGYHQEAGLILRQMRDQG 240 Query: 241 LQTVLMAGDAMNDKEFASITGPAAEGTLFTFGPDPRNKPTAKAIVEKFKAKNIDPEGYTL 300 LQTV+MAGDAMND+EFASITGP AEGTLFTFGPDPRNKPTAKAIVEKFKAKNIDPEGYTL Sbjct: 241 LQTVMMAGDAMNDREFASITGPLAEGTLFTFGPDPRNKPTAKAIVEKFKAKNIDPEGYTL 300 Query: 301 YTYAAMQVWTQAVAKAGSTDAKKVMDTIKAGEWDTVLGKMAFDAKGDIKAIDYVVYKWDA 360 YTYAA QVW+QA KAGST+ KKV+ IKAGEWDTVLGK++FDAKGDIK IDYVVYKWDA Sbjct: 301 YTYAAFQVWSQAATKAGSTEPKKVIAAIKAGEWDTVLGKLSFDAKGDIKLIDYVVYKWDA 360 Query: 361 KGNYTEINP 369 KGNY EINP Sbjct: 361 KGNYAEINP 369 >ref|YP_487291.1| extracellular ligand-binding receptor [Rhodopseudomonas palustris HaA2] gb|ABD08380.1| Extracellular ligand-binding receptor [Rhodopseudomonas palustris HaA2] Length = 371 Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust. Identities = 321/364 (88%), Positives = 341/364 (93%) Query: 4 LKLIGLALGASFAFSASAFAQDITIAVAGPMTGSESAFGRQMKNGAEQAVADINAAGGVL 63 LKL+GLA GAS A S +A AQDI +AV+GPMTGSESAFGRQ+KNGA+QAVAD+NA GGVL Sbjct: 3 LKLLGLAFGASLALSTTALAQDIKVAVSGPMTGSESAFGRQLKNGADQAVADLNAGGGVL 62 Query: 64 GKKLALEADDDACDPKQARSIAEKIGSSKIPFVAGHFCSSSSIPASEAYADANVLQITPA 123 GKKLAL+ DDACDPKQARSIAEK+ IPFVAGHFCSSSSIPASEAYAD NVLQITPA Sbjct: 63 GKKLALQIGDDACDPKQARSIAEKLAGEGIPFVAGHFCSSSSIPASEAYADGNVLQITPA 122 Query: 124 STNPLFTERKLWNVARVCGRDDQQGLVAADYIMKNYKGKNVAILNDKTTYGKGLADETKK 183 STNPLFTERKLWNV RVCGRDDQQGL+AA+YI KN+KGKNVAILNDKTTYGKGLADETKK Sbjct: 123 STNPLFTERKLWNVLRVCGRDDQQGLIAAEYITKNFKGKNVAILNDKTTYGKGLADETKK 182 Query: 184 ALNKAGFQEKMFESYNKGDKDFNSIVSRLKRDNIDLVYVGGYHQEAGLILRQMREQGLQT 243 ALNKAGFQEKMFESYNKGDKDFNSIVSRLKRD+IDLVY+GGYHQEAGLILRQMR+QGL+T Sbjct: 183 ALNKAGFQEKMFESYNKGDKDFNSIVSRLKRDSIDLVYIGGYHQEAGLILRQMRDQGLKT 242 Query: 244 VLMAGDAMNDKEFASITGPAAEGTLFTFGPDPRNKPTAKAIVEKFKAKNIDPEGYTLYTY 303 +MAGDAMNDKEFASITGP AEGTLFTFGPDPRNKPTAKAIVEKFKAK IDPEGYTLYTY Sbjct: 243 AMMAGDAMNDKEFASITGPLAEGTLFTFGPDPRNKPTAKAIVEKFKAKGIDPEGYTLYTY 302 Query: 304 AAMQVWTQAVAKAGSTDAKKVMDTIKAGEWDTVLGKMAFDAKGDIKAIDYVVYKWDAKGN 363 AA QVW+QAVAKA +TD KKV+DTIKAGEWDTVLGKMAFDAKGDIKAIDYVVYKWDAKGN Sbjct: 303 AAFQVWSQAVAKAKTTDPKKVIDTIKAGEWDTVLGKMAFDAKGDIKAIDYVVYKWDAKGN 362 Query: 364 YTEI 367 Y EI Sbjct: 363 YAEI 366