BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0067.0023.p (807 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_568719.1| L-carnitine dehydratase/bile acid-inducible pro... 701 0.0 ref|YP_485196.1| L-carnitine dehydratase/bile acid-inducible pro... 676 0.0 ref|YP_004687794.1| formyl-coenzyme A transferase Frc [Cupriavid... 672 0.0 ref|YP_002008522.1| formyl-CoA transferase; l-carnitine dehydrat... 665 0.0 ref|ZP_08630806.1| hypothetical protein CSIRO_3916 [Bradyrhizobi... 663 0.0 >ref|YP_568719.1| L-carnitine dehydratase/bile acid-inducible protein F [Rhodopseudomonas palustris BisB5] gb|ABE38818.1| L-carnitine dehydratase/bile acid-inducible protein F [Rhodopseudomonas palustris BisB5] Length = 814 Score = 701 bits (1810), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/800 (48%), Positives = 499/800 (62%), Gaps = 19/800 (2%) Query: 4 LSHLRIVEIGSAAATSYCARLFADFGADVQKVEPPQGDPLRRTAPLTPKG---RSAWFAF 60 LS LR+VEIGS A +YC +LFADFGA+V KVEPP GDP R+ APL G SA FA+ Sbjct: 6 LSELRVVEIGSGDALAYCGKLFADFGAEVIKVEPPGGDPDRQIAPLVDAGGRSESATFAW 65 Query: 61 LNFNKSSVV--LDK-RDVSRLRELTTGCDILLDGRGIAAADCPEIDLDAIKRDHPGLIHL 117 LN NK S++ LD+ D +R+ L D+LLD R AA + + ++ PGL Sbjct: 66 LNTNKYSIIGDLDRPDDTARIERLLADSDLLLDARHPAAIEASPLSHRRLREVQPGLAIT 125 Query: 118 DLAWFGDRGPYANFAATDSTIRALTGLVKLVGPEQGPPMHAPDFQIGILAGLWGFIAAAS 177 L+WFG+ GPY ++ ATDS R+L GLVKLVGP +GPP+ D QI ++AGL FI + Sbjct: 126 SLSWFGEHGPYRDYLATDSVCRSLAGLVKLVGPAEGPPVLPRDGQIAVIAGLTAFIPTLA 185 Query: 178 SVLGRMQDGRGRANHLSLFEASIAVTEYIMFEAFQRGDIMRRIGVNRFWPTFPVGIYETK 237 + R G R ++ FEA + +TE+ + A + G RIG+NRF FPVG Y TK Sbjct: 186 GLYARADQG-ARRFAVNAFEAMLQITEFDIALALEAGSTRPRIGLNRFGRGFPVGNYATK 244 Query: 238 QGWLGVTTVTPAQWRAFCEMLGLNELRDDPTLVMGVDRLRHVAEIERRILPKLKQRTAQE 297 GWLGVT VTPAQW FC M+GL EL DP DR H E+ I P L +TA E Sbjct: 245 DGWLGVTVVTPAQWLGFCAMIGLPELGPDPRYSATADRFIHADELNSIIRPVLMHKTALE 304 Query: 298 WFAEGLRRKIPIVPVPEIADLIADEEKRARGAVVPITIGDEAGLSAGTMQRLDATPPLRG 357 WF G+ ++P+ +P++A L+A R RGA + IG + + QRL +P Sbjct: 305 WFERGIELRLPLALIPDMAQLLAQPVMRERGAFAKVEIGASSFDAPVLPQRLTKSPGKPN 364 Query: 358 GRVPDLGEQQ-----ARREAAQRVPAPRPAATDRLPLEGIRVVDFSMGWAGPICTRTLAD 412 GR P GE RR A+R P A LPL GIR+VD +MGWAGP R L D Sbjct: 365 GRAPRAGEHNDAELSPRRRTAERAVRPNEA----LPLSGIRIVDLTMGWAGPSAVRQLGD 420 Query: 413 LGADVIKIEATQYPDWWRGVDRRPAYVLEQMYEKSVRYCIMNRNKRGITLDLTRPKGLEL 472 LGAD+IK+E+ QYPDW+RG D R Y E+ YEK+ + MNRNKRGITLDLT G + Sbjct: 421 LGADIIKVESCQYPDWFRGTDPRGPYHPERTYEKTYWFQTMNRNKRGITLDLTTDDGRAV 480 Query: 473 AKRLLADADLVVDNYSVEVLPKLGLGYDVLRKINPKLVMMSMSAFGAGSVHRDCRAYGST 532 K+LLA AD V+DNY+ +VLP+LGL ++ INP+LV+++M AFG RAYGST Sbjct: 481 LKQLLAGADAVIDNYAADVLPRLGLDVAAMQAINPRLVVVTMPAFGITGRWSAARAYGST 540 Query: 533 LEQGSGLPSVVGDPDGPPVMSHTAFGDAVGGLNGAAAVLTALIHAKLTGQGQFIDLAQIE 592 LEQ SGLPSV G PP M H A GD VGGLN AAA++ L+H K TG GQ IDL+Q+E Sbjct: 541 LEQASGLPSVTGRDGDPPTMLHAALGDPVGGLNAAAALMLGLMHQKRTGDGQHIDLSQVE 600 Query: 593 CMMPFAAPWIVAHSTSGKPPTKYGNRHPDFVPHGCFRCAGEDNWIVVAVSDDAMWPKLAR 652 CM+P A I+ S +G + GNRHP FVP GCF CAG+D W+ +AV DA W L R Sbjct: 601 CMLPMLASSIIEQSATGHTSPRIGNRHPRFVPSGCFPCAGDDQWVTLAVQTDAQWKALCR 660 Query: 653 LLGREDWAADETLKTAAGRRAIEAEIEAAIMAWTAARDADVAMIALQSAGVASGVARLPI 712 ++ R D+AAD +L TA GRRA E IE A+ WT++ ++AM+ LQ AG+A+GVARLPI Sbjct: 661 VMHRPDFAADPSLATADGRRADEDRIEIAVRHWTSSVRPELAMVTLQEAGIAAGVARLPI 720 Query: 713 DLLEDPQLHARGFIQQVDRAFIGRHPQPSMPFRE--SDAPFAIRSVPPTLGEHNRAILGG 770 DL+ DP L G Q V R F+G H PS+ +RE +D P+ I + PTLG+HN +L Sbjct: 721 DLVGDPHLLKTGHWQPVVRRFMGAHLLPSVSYREDFADLPYPIERLAPTLGQHNDEVL-R 779 Query: 771 MLGLSDAELDELSREGIIGT 790 LGLSDAE++ L G+IG Sbjct: 780 ELGLSDAEIEGLHDRGVIGN 799 Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 109/392 (27%), Positives = 159/392 (40%), Gaps = 27/392 (6%) Query: 387 LPLEGIRVVDFSMGWAGPICTRTLADLGADVIKIEATQYPDWWRGVDRRPAYVLEQ-MYE 445 LPL +RVV+ G A C + AD GA+VIK+E DR+ A +++ Sbjct: 4 LPLSELRVVEIGSGDALAYCGKLFADFGAEVIKVEPPG-----GDPDRQIAPLVDAGGRS 58 Query: 446 KSVRYCIMNRNKRGITLDLTRPKGLELAKRLLADADLVVDNYSVEVLPKLGLGYDVLRKI 505 +S + +N NK I DL RP +RLLAD+DL++D + L + LR++ Sbjct: 59 ESATFAWLNTNKYSIIGDLDRPDDTARIERLLADSDLLLDARHPAAIEASPLSHRRLREV 118 Query: 506 NPKLVMMSMSAFGAGSVHRDCRAYGSTLEQGSGLPSVVGDPDGPPVMSHTAFGDAVGGLN 565 P L + S+S FG +RD A S +GL +VG +GPPV+ + GL Sbjct: 119 QPGLAITSLSWFGEHGPYRDYLATDSVCRSLAGLVKLVGPAEGPPVLPRDGQIAVIAGLT 178 Query: 566 GAAAVLTALIHAKLTGQGQFIDLAQIECMMPFAAPWIVAHSTSGKPPTKYG-NRHPDFVP 624 L L G +F + E M+ I +G + G NR P Sbjct: 179 AFIPTLAGLYARADQGARRFA-VNAFEAMLQITEFDIALALEAGSTRPRIGLNRFGRGFP 237 Query: 625 HGCFRCAGEDNWIVVAVSDDAMWPKLARLLGREDWAADETLKTAAGRRAIEAEIEAAIMA 684 G + A +D W+ V V A W ++G + D A R E+ + I Sbjct: 238 VGNY--ATKDGWLGVTVVTPAQWLGFCAMIGLPELGPDPRYSATADRFIHADELNSIIRP 295 Query: 685 WTAARDADVAMIALQSAGVASGVA-RLPIDLLED-------PQLHARGFIQQVDRAFIGR 736 V M G+ RLP+ L+ D P + RG +V+ Sbjct: 296 --------VLMHKTALEWFERGIELRLPLALIPDMAQLLAQPVMRERGAFAKVEIG-ASS 346 Query: 737 HPQPSMPFRESDAPFAIRSVPPTLGEHNRAIL 768 P +P R + +P P GEHN A L Sbjct: 347 FDAPVLPQRLTKSPGKPNGRAPRAGEHNDAEL 378 >ref|YP_485196.1| L-carnitine dehydratase/bile acid-inducible protein F [Rhodopseudomonas palustris HaA2] gb|ABD06285.1| L-carnitine dehydratase/bile acid-inducible protein F [Rhodopseudomonas palustris HaA2] Length = 814 Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/795 (47%), Positives = 485/795 (61%), Gaps = 11/795 (1%) Query: 4 LSHLRIVEIGSAAATSYCARLFADFGADVQKVEPPQGDPLRRTAPLTPKG---RSAWFAF 60 LS LR+VE+GS A +YC +LFADFGA+V KVEPP GDP R+ AP +G SA FA+ Sbjct: 6 LSELRVVELGSGDALAYCGKLFADFGAEVVKVEPPGGDPDRQVAPRVERGGGRESASFAW 65 Query: 61 LNFNKSSVVL---DKRDVSRLRELTTGCDILLDGRGIAAADCPEIDLDAIKRDHPGLIHL 117 LN NK SV D V R+ L D+LLD R + + ++ PGL Sbjct: 66 LNSNKRSVTAKLDDPAGVVRIERLLADADLLLDARHPVEIEASTLSHRRLRETQPGLAIT 125 Query: 118 DLAWFGDRGPYANFAATDSTIRALTGLVKLVGPEQGPPMHAPDFQIGILAGLWGFIAAAS 177 L+WFG+ GPY ++ ATD+ R+L GLVKLVGP +GPP+ D Q ++AGL FI + Sbjct: 126 ALSWFGEHGPYRDYLATDAVCRSLAGLVKLVGPAEGPPVLPRDGQTAVIAGLTAFIPTLA 185 Query: 178 SVLGRMQDGRGRANHLSLFEASIAVTEYIMFEAFQRGDIMRRIGVNRFWPTFPVGIYETK 237 + R G R ++ FEA++ + E+ + A + G RIG+NRF FPVG Y TK Sbjct: 186 GLFARADQG-ARRFAVNAFEATLQIAEFDIALALEAGSTRPRIGLNRFGRGFPVGNYATK 244 Query: 238 QGWLGVTTVTPAQWRAFCEMLGLNELRDDPTLVMGVDRLRHVAEIERRILPKLKQRTAQE 297 GWLGVT VTPAQW FC M+GL EL DP DR H E+ I P L RTA + Sbjct: 245 DGWLGVTVVTPAQWLGFCAMIGLPELGPDPRYSATNDRFIHADELNSIIRPVLMHRTAMD 304 Query: 298 WFAEGLRRKIPIVPVPEIADLIADEEKRARGAVVPITIGDEAGLSAGTMQRLDATPPLRG 357 WF GL ++P+ VP++A L+A R RGA + IG + + QRL A+P Sbjct: 305 WFERGLALRLPLALVPDMAQLLAQPVMRERGAFATVEIGTASFEAPVLPQRLTASPGKPN 364 Query: 358 GRVPDLGEQQARREAAQRVPAPRPA-ATDRLPLEGIRVVDFSMGWAGPICTRTLADLGAD 416 GR P GE + R A R A A++ LPL GIR+VD +MGWAGP R L DLGAD Sbjct: 365 GRAPLCGEHDGVELSPHRRIADRAAGASEALPLSGIRIVDLTMGWAGPSAVRQLGDLGAD 424 Query: 417 VIKIEATQYPDWWRGVDRRPAYVLEQMYEKSVRYCIMNRNKRGITLDLTRPKGLELAKRL 476 ++K+E+ QYPDW+RG D R Y E+ YEK+ + MNRNKRGITLDLT G +L Sbjct: 425 IVKVESCQYPDWFRGTDPRGPYHPERTYEKTYWFQTMNRNKRGITLDLTTADGRAALTKL 484 Query: 477 LADADLVVDNYSVEVLPKLGLGYDVLRKINPKLVMMSMSAFGAGSVHRDCRAYGSTLEQG 536 LA AD V+DNY+ +VLP+LGL ++ INP+LV+++M AFG RAYGSTLEQ Sbjct: 485 LAGADAVIDNYAADVLPRLGLDVAAMQAINPRLVIVTMPAFGLTGRWSAARAYGSTLEQA 544 Query: 537 SGLPSVVGDPDGPPVMSHTAFGDAVGGLNGAAAVLTALIHAKLTGQGQFIDLAQIECMMP 596 SGLPSV G PP M H A GD VGGLN AAA++ L + + TG GQ IDL+Q+ECM+P Sbjct: 545 SGLPSVTGRDGDPPTMQHAALGDPVGGLNAAAALMLGLTYQQRTGDGQHIDLSQVECMLP 604 Query: 597 FAAPWIVAHSTSGKPPTKYGNRHPDFVPHGCFRCAGEDNWIVVAVSDDAMWPKLARLLGR 656 A I+ S +G + GNRHP FVP GCF CAGED W+ + V DA W L R++ R Sbjct: 605 MLASSIIEQSVTGHTGPRLGNRHPRFVPSGCFPCAGEDQWVTLVVQSDAQWAALCRVMHR 664 Query: 657 EDWAADETLKTAAGRRAIEAEIEAAIMAWTAARDADVAMIALQSAGVASGVARLPIDLLE 716 D A D L TA GRRA E IE A+ WT+ ++AM+ LQ A +A+GVARLP+DL+ Sbjct: 665 PDLAHDPALATADGRRADEDRIEVAVRHWTSTVRPELAMVTLQEAAIAAGVARLPVDLVG 724 Query: 717 DPQLHARGFIQQVDRAFIGRHPQPSMPFRE--SDAPFAIRSVPPTLGEHNRAILGGMLGL 774 D L A G Q V R F+G H PS+ +RE ++ P+ I + PTLG+HN +L +GL Sbjct: 725 DAHLLATGHWQPVVRPFMGPHLLPSVSYREGFAERPYPIERLAPTLGQHNHEVL-REIGL 783 Query: 775 SDAELDELSREGIIG 789 ++AE+ +L G+IG Sbjct: 784 TEAEIGDLHDRGVIG 798 Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 100/388 (25%), Positives = 154/388 (39%), Gaps = 27/388 (6%) Query: 387 LPLEGIRVVDFSMGWAGPICTRTLADLGADVIKIEATQYPDWWRGVDRRPAYVLEQ-MYE 445 LPL +RVV+ G A C + AD GA+V+K+E DR+ A +E+ Sbjct: 4 LPLSELRVVELGSGDALAYCGKLFADFGAEVVKVEPPGGDP-----DRQVAPRVERGGGR 58 Query: 446 KSVRYCIMNRNKRGITLDLTRPKG-LELAKRLLADADLVVDNYSVEVLPKLGLGYDVLRK 504 +S + +N NKR +T L P G + + + L L+ + VE+ L + LR+ Sbjct: 59 ESASFAWLNSNKRSVTAKLDDPAGVVRIERLLADADLLLDARHPVEIEAST-LSHRRLRE 117 Query: 505 INPKLVMMSMSAFGAGSVHRDCRAYGSTLEQGSGLPSVVGDPDGPPVMSHTAFGDAVGGL 564 P L + ++S FG +RD A + +GL +VG +GPPV+ + GL Sbjct: 118 TQPGLAITALSWFGEHGPYRDYLATDAVCRSLAGLVKLVGPAEGPPVLPRDGQTAVIAGL 177 Query: 565 NGAAAVLTALIHAKLTGQGQFIDLAQIECMMPFAAPWIVAHSTSGKPPTKYG-NRHPDFV 623 L L G +F + E + A I +G + G NR Sbjct: 178 TAFIPTLAGLFARADQGARRFA-VNAFEATLQIAEFDIALALEAGSTRPRIGLNRFGRGF 236 Query: 624 PHGCFRCAGEDNWIVVAVSDDAMWPKLARLLGREDWAADETLKTAAGRRAIEAEIEAAIM 683 P G + A +D W+ V V A W ++G + D R E+ + I Sbjct: 237 PVGNY--ATKDGWLGVTVVTPAQWLGFCAMIGLPELGPDPRYSATNDRFIHADELNSIIR 294 Query: 684 AWTAARDADVAMIALQSAGVASGVARLPIDLLED-------PQLHARGFIQQVDRAFIGR 736 R A + G+A RLP+ L+ D P + RG V+ Sbjct: 295 PVLMHRTA----MDWFERGLA---LRLPLALVPDMAQLLAQPVMRERGAFATVEIG-TAS 346 Query: 737 HPQPSMPFRESDAPFAIRSVPPTLGEHN 764 P +P R + +P P GEH+ Sbjct: 347 FEAPVLPQRLTASPGKPNGRAPLCGEHD 374 >ref|YP_004687794.1| formyl-coenzyme A transferase Frc [Cupriavidus necator N-1] gb|AEI81756.1| formyl-coenzyme A transferase Frc [Cupriavidus necator N-1] Length = 823 Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/806 (45%), Positives = 487/806 (60%), Gaps = 23/806 (2%) Query: 3 ALSHLRIVEIGSAAATSYCARLFADFGADVQKVEPPQGDPLRRTAPLTP-----KGRSAW 57 AL LR++E+GS A +Y +LF+DFGA+V KVE P GD R+ PL + SA Sbjct: 12 ALGGLRVLEVGSGPALAYAGKLFSDFGAEVIKVESPAGDTWRQMPPLVSIADAAQPESAL 71 Query: 58 FAFLNFNKSSVVLDK---RDVSRLRELTTGCDILLDGR------GIAAADCPEIDLDAIK 108 FA+LN NK SV D D L +L CD++LD R GI + D Sbjct: 72 FAWLNTNKRSVTADDGNAEDGVWLAQLARTCDVVLDARALTEGPGILGTPLWQRAADETS 131 Query: 109 RDHPGLIHLDLAWFGDRGPYANFAATDSTIRALTGLVKLVGPEQGPPMHAPDFQIGILAG 168 P I + L WFG+ GPY+++A ++ R L G V GP GPP D Q I+ G Sbjct: 132 GHEP--IEVALTWFGESGPYSHYAGAEAVCRGLAGAVHGSGPADGPPHMPHDVQSAIVFG 189 Query: 169 LWGFIAAASSVLGRMQDGRGRANHLSLFEASIAVTEYIMFEAFQRGDIMRRIGVNRFWPT 228 L F AA ++++GR Q R LS E+ +V E R ++R+GVNRF T Sbjct: 190 LSAFSAAVAALIGRGQGSRRYV--LSAHESIFSVVEMEAGMVQDRRHPLQRLGVNRFCGT 247 Query: 229 FPVGIYETKQGWLGVTTVTPAQWRAFCEMLGLNELRDDPTLVMGVDRLRHVAEIERRILP 288 P GIY+T +GW+G+ T T QW+ CE +G +EL +DP G +R+ EI+ ++P Sbjct: 248 HPAGIYQTAEGWIGIFTHTLPQWQGLCEAIGRSELGNDPRYASGPERMARADEIDALLMP 307 Query: 289 KLKQRTAQEWFAEGLRRKIPIVPVPEIADLIADEEKRARGAVVPITIGDEAGLSAGTMQR 348 RTA++WF +K P V VP + L+ E R RGA VP+ +GD + R Sbjct: 308 AFLARTARQWFEILGDKKHPAVIVPTMETLLGQEVHRQRGAFVPVGVGDASFEGPVVPLR 367 Query: 349 LDATPPLRGGRVPDLGEQQARREAAQRVPAPRPA----ATDRLPLEGIRVVDFSMGWAGP 404 LDA PL GG P G + PR + A +RLPL+G+R+VD +MGWAGP Sbjct: 368 LDAAGPLPGGNAPAKGAHDLHYRTSGLDHRPRLSLKRTAGERLPLQGLRMVDLTMGWAGP 427 Query: 405 ICTRTLADLGADVIKIEATQYPDWWRGVDRRPAYVLEQMYEKSVRYCIMNRNKRGITLDL 464 + RTLAD GA++IK+E+T YPDWWRG + A+ +++YEK+ + +MNRNK+GITLDL Sbjct: 428 LAARTLADFGAEIIKVESTGYPDWWRGANFTEAFYRDRLYEKNSNFNLMNRNKQGITLDL 487 Query: 465 TRPKGLELAKRLLADADLVVDNYSVEVLPKLGLGYDVLRKINPKLVMMSMSAFGAGSVHR 524 TRP+G ++ +L+ AD V++NYS EVLPKLGL Y+ LR N +LVM+SM AFG G+ Sbjct: 488 TRPEGKQVLLQLVESADAVIENYSAEVLPKLGLDYEALRARNERLVMLSMPAFGLGNAWS 547 Query: 525 DCRAYGSTLEQGSGLPSVVGDPDGPPVMSHTAFGDAVGGLNGAAAVLTALIHAKLTGQGQ 584 + RAYG TLEQ SGLP G PDGPP M+ A+GD +GGLNG AA+L AL + TGQG+ Sbjct: 548 NTRAYGGTLEQASGLPLYTGHPDGPPAMTSYAYGDPIGGLNGGAAILLALFAQQATGQGR 607 Query: 585 FIDLAQIECMMPFAAPWIVAHSTSGKPPTKYGNRHPDFVPHGCFRCAGEDNWIVVAVSDD 644 I+L+Q+E M+P AAP+++ S SG + GNRHP PHGCFRCAG+D WIV+ V+ D Sbjct: 608 HINLSQVEAMLPMAAPFMLEQSISGAVSPRQGNRHPMHSPHGCFRCAGDDAWIVLTVT-D 666 Query: 645 AMWPKLARLLGREDWAADETLKTAAGRRAIEAEIEAAIMAWTAARDADVAMIALQSAGVA 704 A WP L R +GR D A D L A+GRRA E IE AI +W RDA+ AM LQ AG+A Sbjct: 667 ADWPALCRAIGRADLATDPRLTQASGRRAEENRIEQAITSWCVVRDAEAAMQLLQQAGIA 726 Query: 705 SGVARLPIDLLEDPQLHARGFIQQVDRAFIGRHPQPSMPFRESDAPFAIRSVPPTLGEHN 764 SGV R +L+DP L ARGF ++V+RA IG + + FR P IR V PTLGEH Sbjct: 727 SGVVRPMSQVLQDPHLRARGFWREVERAHIGTYTSSTAWFRTGPDPVPIRHVAPTLGEHT 786 Query: 765 RAILGGMLGLSDAELDELSREGIIGT 790 A+L +LGLS ++ L R+GI GT Sbjct: 787 EAVLSRVLGLSTDQVASLERQGITGT 812 Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 74/312 (23%), Positives = 128/312 (41%), Gaps = 13/312 (4%) Query: 386 RLPLEGIRVVDFSMGWAGPICTRTLADLGADVIKIEATQYPDWWRGVDRRPAYVLEQMYE 445 +L L G+RV++ G A + +D GA+VIK+E+ D WR + + + Sbjct: 10 QLALGGLRVLEVGSGPALAYAGKLFSDFGAEVIKVESPA-GDTWRQMPPL-VSIADAAQP 67 Query: 446 KSVRYCIMNRNKRGITLDLTRPKGLELAKRLLADADLVVDNYSVEVLPKLGLGYDVLRKI 505 +S + +N NKR +T D + +L D+V+D ++ P + LG + ++ Sbjct: 68 ESALFAWLNTNKRSVTADDGNAEDGVWLAQLARTCDVVLDARALTEGPGI-LGTPLWQRA 126 Query: 506 NPKL-----VMMSMSAFGAGSVHRDCRAYGSTLEQGSGLPSVVGDPDGPPVMSHTAFGDA 560 + + ++++ FG + + +G G DGPP M H Sbjct: 127 ADETSGHEPIEVALTWFGESGPYSHYAGAEAVCRGLAGAVHGSGPADGPPHMPHDVQSAI 186 Query: 561 VGGLNGAAAVLTALIHAKLTGQGQFIDLAQIECMMPFAAPWIVAHSTSGKPPTKYG-NRH 619 V GL+ +A + ALI + G +++ L+ E + P + G NR Sbjct: 187 VFGLSAFSAAVAALI-GRGQGSRRYV-LSAHESIFSVVEMEAGMVQDRRHPLQRLGVNRF 244 Query: 620 PDFVPHGCFRCAGEDNWIVVAVSDDAMWPKLARLLGREDWAADETLKTAAGRRAIEAEIE 679 P G ++ A + WI + W L +GR + D + R A EI+ Sbjct: 245 CGTHPAGIYQTA--EGWIGIFTHTLPQWQGLCEAIGRSELGNDPRYASGPERMARADEID 302 Query: 680 AAIMAWTAARDA 691 A +M AR A Sbjct: 303 ALLMPAFLARTA 314 >ref|YP_002008522.1| formyl-CoA transferase; l-carnitine dehydratase/bile acid-inducible protein f [Cupriavidus taiwanensis LMG 19424] emb|CAQ72470.1| putative Formyl-CoA transferase; L-carnitine dehydratase/bile acid-inducible protein F [Cupriavidus taiwanensis LMG 19424] Length = 823 Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/806 (45%), Positives = 485/806 (60%), Gaps = 23/806 (2%) Query: 3 ALSHLRIVEIGSAAATSYCARLFADFGADVQKVEPPQGDPLRRTAPLTP-----KGRSAW 57 AL LR++E+GS A +Y +LFADFGA+V KVE P GD RR PL + SA Sbjct: 12 ALGGLRVLEVGSGPALAYAGKLFADFGAEVIKVESPAGDAWRRMPPLVSAPEAGQQESAL 71 Query: 58 FAFLNFNKSSVVLDKRDV---SRLRELTTGCDILLDGRGIAAADCPEIDLDAIKR----D 110 FA+LN NK SV D R+V + L +L CD++LD R +A + P I + + D Sbjct: 72 FAWLNTNKRSVTADDRNVEDGAWLAQLALTCDVVLDARALA--EGPGILGTPVWQQAADD 129 Query: 111 HPGL--IHLDLAWFGDRGPYANFAATDSTIRALTGLVKLVGPEQGPPMHAPDFQIGILAG 168 PG I + L WFG+ GPY+++A ++ RAL G V GP GPP D Q I+ G Sbjct: 130 TPGHAPIEVALTWFGESGPYSHYAGAEAVCRALAGAVHGSGPADGPPHMPHDVQSAIVVG 189 Query: 169 LWGFIAAASSVLGRMQDGRGRANHLSLFEASIAVTEYIMFEAFQRGDIMRRIGVNRFWPT 228 L F AA ++++G Q R LS EA V E + +RR+GVNRF T Sbjct: 190 LSAFSAAVAALIGSGQGSRRYV--LSAHEAIFGVVEMEAGMVQDKRHPLRRLGVNRFCGT 247 Query: 229 FPVGIYETKQGWLGVTTVTPAQWRAFCEMLGLNELRDDPTLVMGVDRLRHVAEIERRILP 288 P GIY+T GW+G+ T T QW+ CE +G +L +DP G +R+ EI+ ++P Sbjct: 248 HPAGIYQTADGWIGIFTHTLPQWKGLCEAIGRPDLGNDPRYASGPERMERADEIDALLMP 307 Query: 289 KLKQRTAQEWFAEGLRRKIPIVPVPEIADLIADEEKRARGAVVPITIGDEAGLSAGTMQR 348 RTA++WF +K P V VP + L+ R RGA VP+ +G + R Sbjct: 308 AFLTRTARQWFEILGDQKHPAVIVPTMETLLGQAVHRQRGAFVPVGVGGASFEGPVVPLR 367 Query: 349 LDATPPLRGGRVPDLGEQQARREAAQRVPAPRPA----ATDRLPLEGIRVVDFSMGWAGP 404 LDA PL GG P G PR A +RLPL+G+RV+D +MGWAGP Sbjct: 368 LDAAGPLPGGNAPAKGAHDLHYRTVGLDHRPRQTLRRMAGERLPLQGLRVIDLTMGWAGP 427 Query: 405 ICTRTLADLGADVIKIEATQYPDWWRGVDRRPAYVLEQMYEKSVRYCIMNRNKRGITLDL 464 + RTLAD GA++IK+E+T YPDWWRG + A+ +++YEK+ + +MNRNK G+TLDL Sbjct: 428 LAARTLADFGAEIIKVESTGYPDWWRGANFTEAFYRDRLYEKNANFNLMNRNKLGVTLDL 487 Query: 465 TRPKGLELAKRLLADADLVVDNYSVEVLPKLGLGYDVLRKINPKLVMMSMSAFGAGSVHR 524 TRP+G +L +L+ AD V++NYS EVLPKLGL Y+ LR N +LVM+SM AFG G+ Sbjct: 488 TRPEGRQLLLQLVESADAVIENYSAEVLPKLGLDYEALRARNKRLVMLSMPAFGLGNAWS 547 Query: 525 DCRAYGSTLEQGSGLPSVVGDPDGPPVMSHTAFGDAVGGLNGAAAVLTALIHAKLTGQGQ 584 + RAYG TLEQ SGLP G PDGPP M+ A+GD +GGLNG AA+L AL + GQG+ Sbjct: 548 NTRAYGGTLEQASGLPLYTGHPDGPPAMTSYAYGDPIGGLNGGAAILLALFVQQAAGQGR 607 Query: 585 FIDLAQIECMMPFAAPWIVAHSTSGKPPTKYGNRHPDFVPHGCFRCAGEDNWIVVAVSDD 644 I+L+Q+E M+P AAP+++ S +G + GNRHP PHGCFRCAG+D WIV+ V+ D Sbjct: 608 HINLSQVEAMLPMAAPFMLEQSVAGAVSPRQGNRHPMHAPHGCFRCAGDDAWIVLTVT-D 666 Query: 645 AMWPKLARLLGREDWAADETLKTAAGRRAIEAEIEAAIMAWTAARDADVAMIALQSAGVA 704 A WP L R +GRED AAD +L A+GRRA IE AI +W RDA+ AM LQ AG+A Sbjct: 667 AEWPALCREIGREDLAADPSLAQASGRRADAGRIEQAIKSWCVRRDAEAAMRQLQQAGIA 726 Query: 705 SGVARLPIDLLEDPQLHARGFIQQVDRAFIGRHPQPSMPFRESDAPFAIRSVPPTLGEHN 764 +GV R +L DP L ARGF QV+RA +G + + FR P IR V PTLGEH Sbjct: 727 AGVVRPMSQVLADPHLCARGFWHQVERAHVGTYTASTAWFRTGPDPVPIRHVAPTLGEHT 786 Query: 765 RAILGGMLGLSDAELDELSREGIIGT 790 A+L +LGLS ++ L + GI GT Sbjct: 787 EAVLRRVLGLSAEQIASLEQLGITGT 812 Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 83/310 (26%), Positives = 131/310 (42%), Gaps = 25/310 (8%) Query: 386 RLPLEGIRVVDFSMGWAGPICTRTLADLGADVIKIEATQYPDWWRGVDRRPAYVL--EQM 443 +L L G+RV++ G A + AD GA+VIK+E+ D WR R P V E Sbjct: 10 QLALGGLRVLEVGSGPALAYAGKLFADFGAEVIKVESPAG-DAWR---RMPPLVSAPEAG 65 Query: 444 YEKSVRYCIMNRNKRGITLDLTRPKGLELAKRLLADADLVVDNYSVEVLPKLGLGYDVLR 503 ++S + +N NKR +T D + +L D+V+D ++ P + LG V + Sbjct: 66 QQESALFAWLNTNKRSVTADDRNVEDGAWLAQLALTCDVVLDARALAEGPGI-LGTPVWQ 124 Query: 504 KINPKL-----VMMSMSAFGAGSVHRDCRAYGSTLEQGSGLPSVVGDPDGPPVMSHTAFG 558 + + ++++ FG + + +G G DGPP M H Sbjct: 125 QAADDTPGHAPIEVALTWFGESGPYSHYAGAEAVCRALAGAVHGSGPADGPPHMPHDVQS 184 Query: 559 DAVGGLNGAAAVLTALIHAKLTGQG--QFIDLAQIECMMPFAAPWIVAHSTSGK--PPTK 614 V GL+ +A + ALI +GQG +++ L+ E + F + A K P + Sbjct: 185 AIVVGLSAFSAAVAALIG---SGQGSRRYV-LSAHEAI--FGVVEMEAGMVQDKRHPLRR 238 Query: 615 YG-NRHPDFVPHGCFRCAGEDNWIVVAVSDDAMWPKLARLLGREDWAADETLKTAAGRRA 673 G NR P G ++ A D WI + W L +GR D D + R Sbjct: 239 LGVNRFCGTHPAGIYQTA--DGWIGIFTHTLPQWKGLCEAIGRPDLGNDPRYASGPERME 296 Query: 674 IEAEIEAAIM 683 EI+A +M Sbjct: 297 RADEIDALLM 306 >ref|ZP_08630806.1| hypothetical protein CSIRO_3916 [Bradyrhizobiaceae bacterium SG-6C] gb|EGP06523.1| hypothetical protein CSIRO_3916 [Bradyrhizobiaceae bacterium SG-6C] Length = 821 Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/809 (45%), Positives = 491/809 (60%), Gaps = 12/809 (1%) Query: 4 LSHLRIVEIGSAAATSYCARLFADFGADVQKVEPPQGDPLRRTAPLTPKG----RSAWFA 59 LS LR+VE+GS YC +LF DFGA+V K+EP GDP RR PL G S FA Sbjct: 6 LSSLRVVELGSGDTLGYCGKLFVDFGAEVIKIEPQGGDPGRRIPPLADVGGGQRESLTFA 65 Query: 60 FLNFNKSSVVLDKRDV---SRLRELTTGCDILLDGRGIAAADCPEIDLDAIKRDHPGLIH 116 +LN NK S++ D SR+ EL D+LLD R +I D +++ PGL Sbjct: 66 WLNTNKKSIIADPETADGASRILELLATADLLLDARHPDGIKASQISHDRLRKADPGLAI 125 Query: 117 LDLAWFGDRGPYANFAATDSTIRALTGLVKLVGPEQGPPMHAPDFQIGILAGLWGFIAAA 176 ++WFG+ GPY N+ ATDS R+L GLVKLVGP +GPP+ D QIG++ GL FI + Sbjct: 126 TAISWFGEHGPYRNYLATDSVCRSLAGLVKLVGPVEGPPVLPRDGQIGVVGGLTAFIPSL 185 Query: 177 SSVLGRMQDGRGRANHLSLFEASIAVTEYIMFEAFQRGDIMRRIGVNRFWPTFPVGIYET 236 + + G R A ++ EA + ++E+ A + G R G+NRF +P G ++T Sbjct: 186 AGLYGYEHGARRFA--VNNLEAMLHISEFDTGLALESGFTRPRPGINRFGRGYPSGNFQT 243 Query: 237 KQGWLGVTTVTPAQWRAFCEMLGLNELRDDPTLVMGVDRLRHVAEIERRILPKLKQRTAQ 296 K GWLGVT VTPAQW AFC ML + EL DP + R H E++ I P L ++TA Sbjct: 244 KHGWLGVTVVTPAQWAAFCTMLDMPELGADPKYSATIGRFNHADELKAIITPALLKKTAL 303 Query: 297 EWFAEGLRRKIPIVPVPEIADLIADEEKRARGAVVPITIGDEAGLSAGTMQRLDATPPLR 356 EWF G+ ++P+ VP++ +L+ + RARGA + IG+ + Q L + P Sbjct: 304 EWFEMGIDLRLPLAVVPDMKELLEQDVHRARGAFGTVEIGNASFEGPVLPQYLTRSRPRP 363 Query: 357 GGRVPDLGEQQARREAAQRVPAPRPAA-TDRLPLEGIRVVDFSMGWAGPICTRTLADLGA 415 GR P G A + A R A D LPL+G+R+VD +MGWAGP TR + DLGA Sbjct: 364 NGRAPLAGSDDKAALPAHKRKATRAATPQDELPLKGLRIVDLTMGWAGPTATRQMGDLGA 423 Query: 416 DVIKIEATQYPDWWRGVDRRPAYVLEQMYEKSVRYCIMNRNKRGITLDLTRPKGLELAKR 475 D+IK+E+ QYPDW+RG D RP Y E+ YEK+ + + NRNKRGITLDLT GL L KR Sbjct: 424 DIIKVESCQYPDWFRGTDTRPPYHEERTYEKTYWFQMNNRNKRGITLDLTTEAGLSLLKR 483 Query: 476 LLADADLVVDNYSVEVLPKLGLGYDVLRKINPKLVMMSMSAFGAGSVHRDCRAYGSTLEQ 535 L+ DAD V+DNY+ +V+P+LGLG D + KINP+L++++M AFG RAYGSTLEQ Sbjct: 484 LMKDADAVIDNYAADVMPRLGLGVDDILKINPRLIVVTMPAFGMTGKWSGVRAYGSTLEQ 543 Query: 536 GSGLPSVVGDPDGPPVMSHTAFGDAVGGLNGAAAVLTALIHAKLTGQGQFIDLAQIECMM 595 SGLPSV G PD PPVM H A GD +GGLN AAA+L + + TG+GQ IDL+Q+ECM+ Sbjct: 544 ASGLPSVTGGPDDPPVMLHAAIGDPIGGLNAAAALLLGFMQQRNTGEGQHIDLSQVECML 603 Query: 596 PFAAPWIVAHSTSGKPPTKYGNRHPDFVPHGCFRCAGEDNWIVVAVSDDAMWPKLARLLG 655 P AP I+ S +G + GNRHP +VP+GCF G D W+ ++V + W L + Sbjct: 604 PMVAPSILEQSATGATSPRTGNRHPQYVPNGCFPTLGIDQWLTLSVRSNDEWKALCGAMR 663 Query: 656 REDWAADETLKTAAGRRAIEAEIEAAIMAWTAARDADVAMIALQSAGVASGVARLPIDLL 715 R D A D L TA GRR E IE AI W A D+AM+ LQ AGV +G+A+LP DL Sbjct: 664 RPDLANDPALATAEGRREHEDSIEVAIRHWLADVRPDIAMVTLQKAGVPAGIAKLPQDLA 723 Query: 716 EDPQLHARGFIQQVDRAFIGRHPQPSMPFRESDA--PFAIRSVPPTLGEHNRAILGGMLG 773 DP L G Q DR F+G H PS+ +RE D+ P+AI + PTLG+HN +L +LG Sbjct: 724 SDPHLLKTGHWQPSDRPFMGPHLLPSVAYREGDSELPYAITHLAPTLGQHNHEVLREVLG 783 Query: 774 LSDAELDELSREGIIGTEMLMEEQLVKEK 802 LSDAE+ EL R +IGT + + K+ Sbjct: 784 LSDAEIAELERNEVIGTSATLPKPKAKKS 812 Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 85/298 (28%), Positives = 126/298 (42%), Gaps = 8/298 (2%) Query: 386 RLPLEGIRVVDFSMGWAGPICTRTLADLGADVIKIEATQYPDWWRGVDRRPAYVLEQMYE 445 LPL +RVV+ G C + D GA+VIKIE Q D R + P + Sbjct: 3 NLPLSSLRVVELGSGDTLGYCGKLFVDFGAEVIKIEP-QGGDPGRRIP--PLADVGGGQR 59 Query: 446 KSVRYCIMNRNKRGITLDLTRPKGLELAKRLLADADLVVDNYSVEVLPKLGLGYDVLRKI 505 +S+ + +N NK+ I D G LLA ADL++D + + + +D LRK Sbjct: 60 ESLTFAWLNTNKKSIIADPETADGASRILELLATADLLLDARHPDGIKASQISHDRLRKA 119 Query: 506 NPKLVMMSMSAFGAGSVHRDCRAYGSTLEQGSGLPSVVGDPDGPPVMSHTAFGDAVGGLN 565 +P L + ++S FG +R+ A S +GL +VG +GPPV+ VGGL Sbjct: 120 DPGLAITAISWFGEHGPYRNYLATDSVCRSLAGLVKLVGPVEGPPVLPRDGQIGVVGGLT 179 Query: 566 GAAAVLTALIHAKLTGQGQFIDLAQIECMMPFAAPWIVAHSTSGKPPTKYG-NRHPDFVP 624 L L + G +F + +E M+ + SG + G NR P Sbjct: 180 AFIPSLAGL-YGYEHGARRFA-VNNLEAMLHISEFDTGLALESGFTRPRPGINRFGRGYP 237 Query: 625 HGCFRCAGEDNWIVVAVSDDAMWPKLARLLGREDWAADETLKTAAGRRAIEAEIEAAI 682 G F+ + W+ V V A W +L + AD GR E++A I Sbjct: 238 SGNFQT--KHGWLGVTVVTPAQWAAFCTMLDMPELGADPKYSATIGRFNHADELKAII 293