BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0067.0018.p         (110 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_769422.1| hypothetical protein bsl2782 [Bradyrhizobium ja...    89   2e-16
ref|YP_533843.1| hypothetical protein RPC_3998 [Rhodopseudomonas...    64   9e-09
ref|YP_004110702.1| hypothetical protein Rpdx1_4418 [Rhodopseudo...    61   5e-08
ref|NP_949537.1| hypothetical protein RPA4201 [Rhodopseudomonas ...    59   3e-07
ref|YP_485036.1| hypothetical protein RPB_1415 [Rhodopseudomonas...    58   4e-07

>ref|NP_769422.1| hypothetical protein bsl2782 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC48047.1| bsl2782 [Bradyrhizobium japonicum USDA 110]
          Length = 94

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/94 (56%), Positives = 64/94 (68%), Gaps = 14/94 (14%)

Query: 1  MNIKLAVIGLAALGSAALMSG-AASAMPNGLPQASHIA-GETSNVDKVRQVCDRWGRCYW 58
          M +K AV+GLAALGSAAL SG A +AMPNG+PQA  +A G  +NVD+VR VC++WGRC+W
Sbjct: 1  MKLKFAVLGLAALGSAALTSGQALAAMPNGIPQADRVASGPAANVDQVRMVCNQWGRCWW 60

Query: 59 RPGAYG-----------YYGPRHHGWHHRPHFHH 81
          RP  YG           Y GPR  GW HR H+H 
Sbjct: 61 RPNYYGAYGYYGGPRRYYGGPRPWGWGHR-HWHR 93


>ref|YP_533843.1| hypothetical protein RPC_3998 [Rhodopseudomonas palustris BisB18]
 gb|ABD89524.1| conserved hypothetical protein [Rhodopseudomonas palustris
          BisB18]
          Length = 97

 Score = 63.5 bits (153), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 43/88 (48%), Positives = 55/88 (62%), Gaps = 16/88 (18%)

Query: 12 ALGSAALMSGAASAMPNGLPQA-SHIAGETSNVDKVRQVCDRWGRCYWRPGAYG------ 64
           +G  AL SGAASAMPNGLP A S  +G  + +D+VR VC+ WGRC+WRP  Y       
Sbjct: 12 TIGGLALSSGAASAMPNGLPGAVSAASGPAAQLDQVRYVCNAWGRCWWRPNYYNAYGYYG 71

Query: 65 --YYGPRHHGWHHRPHFHHRPHHYGHRP 90
            +YGPR +G   RP   +RP  +G+RP
Sbjct: 72 PRFYGPRFYG--PRP---YRP--WGYRP 92


>ref|YP_004110702.1| hypothetical protein Rpdx1_4418 [Rhodopseudomonas palustris DX-1]
 gb|ADU45969.1| hypothetical protein Rpdx1_4418 [Rhodopseudomonas palustris DX-1]
          Length = 101

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/75 (49%), Positives = 49/75 (65%), Gaps = 1/75 (1%)

Query: 22 AASAMPNGLPQASHIAGETS-NVDKVRQVCDRWGRCYWRPGAYGYYGPRHHGWHHRPHFH 80
          A++AMPNGLP A+  +G  S NVD+VR VC+ WGRC+WRP  YG YG     ++  P  +
Sbjct: 23 ASAAMPNGLPAAAQASGSPSANVDQVRYVCNEWGRCWWRPNYYGAYGYYGPRFYGPPPRY 82

Query: 81 HRPHHYGHRPHHGGH 95
          + P HYG R + G H
Sbjct: 83 YGPRHYGPRGYRGWH 97


>ref|NP_949537.1| hypothetical protein RPA4201 [Rhodopseudomonas palustris CGA009]
 ref|YP_001993647.1| hypothetical protein Rpal_4681 [Rhodopseudomonas palustris TIE-1]
 emb|CAE29642.1| hypothetical protein RPA4201 [Rhodopseudomonas palustris CGA009]
 gb|ACF03172.1| conserved hypothetical protein [Rhodopseudomonas palustris TIE-1]
          Length = 96

 Score = 58.9 bits (141), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/91 (51%), Positives = 57/91 (62%), Gaps = 11/91 (12%)

Query: 1  MNIKLAVIGLAALGSAALMSGAASA-MPNGLPQASHIAGETS-NVDKVRQVCDRWGRCYW 58
          MN+KLAV   AAL +  L  G ASA MPNGLP A+  AG  S  VD+VR VC+ WGRC+W
Sbjct: 1  MNLKLAVAAAAALSAVVLAPGIASAAMPNGLPGAAQAAGSPSAQVDQVRYVCNAWGRCWW 60

Query: 59 RPGAYG--------YYGPRHHGWHHRPHFHH 81
          RP  YG        +YGPR++G   RP+  H
Sbjct: 61 RPNYYGAYGYYGPRFYGPRYYG-PPRPYGRH 90


>ref|YP_485036.1| hypothetical protein RPB_1415 [Rhodopseudomonas palustris HaA2]
 gb|ABD06125.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2]
          Length = 100

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 23/40 (57%), Positives = 33/40 (82%), Gaps = 1/40 (2%)

Query: 22 AASAMPNGLP-QASHIAGETSNVDKVRQVCDRWGRCYWRP 60
          A++AMPNGLP Q + +  +++N+D+VR VCD WGRC+WRP
Sbjct: 23 ASAAMPNGLPNQVNAVGSQSANIDQVRYVCDPWGRCFWRP 62