BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0067.0016.p         (131 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001204523.1| putative transcriptional regulator [Bradyrhi...   258   3e-67
ref|YP_001238844.1| putative transcriptional regulator [Bradyrhi...   256   6e-67
ref|NP_769425.1| transcriptional regulator [Bradyrhizobium japon...   248   2e-64
ref|YP_004062619.1| transcriptional regulator protein [Candidatu...   116   1e-24
ref|YP_004277659.1| transcriptional regulator [Agrobacterium sp....   112   1e-23

>ref|YP_001204523.1| putative transcriptional regulator [Bradyrhizobium sp. ORS 278]
 emb|CAL76286.1| putative transcriptional regulatory protein [Bradyrhizobium sp. ORS
           278]
          Length = 131

 Score =  258 bits (658), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 128/131 (97%), Positives = 131/131 (100%)

Query: 1   MNRSAAKKMKQRSAGKPDIELGKRIRLRRVEQKISQAELGDKLGVSFQQVQKYEKGVNRV 60
           MN+SAAKKMKQRSAGKPDIELGKRIRLRRVEQKISQAELG+KLGVSFQQVQKYEKGVNRV
Sbjct: 1   MNKSAAKKMKQRSAGKPDIELGKRIRLRRVEQKISQAELGEKLGVSFQQVQKYEKGVNRV 60

Query: 61  GAARLQQIATALDVPVTFFYDGDNKAREVESLLFLDSAFSLRLLRAYSKIKDQTVQRQLV 120
           GAARLQQIATALDVPVTFFYDGDNKAREVESLLFLDSAFSLRLLRAYSKIKDQTVQRQLV
Sbjct: 61  GAARLQQIATALDVPVTFFYDGDNKAREVESLLFLDSAFSLRLLRAYSKIKDQTVQRQLV 120

Query: 121 SLMESIAANED 131
           SLMESIAANE+
Sbjct: 121 SLMESIAANEE 131


>ref|YP_001238844.1| putative transcriptional regulator [Bradyrhizobium sp. BTAi1]
 gb|ABQ34938.1| putative transcriptional regulatory protein [Bradyrhizobium sp.
           BTAi1]
          Length = 131

 Score =  256 bits (655), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 127/131 (96%), Positives = 131/131 (100%)

Query: 1   MNRSAAKKMKQRSAGKPDIELGKRIRLRRVEQKISQAELGDKLGVSFQQVQKYEKGVNRV 60
           MN+SAAKKMKQRSAGKPDIELGKRIRLRRVEQKISQAELG+KLGVSFQQVQKYEKGVNRV
Sbjct: 1   MNKSAAKKMKQRSAGKPDIELGKRIRLRRVEQKISQAELGEKLGVSFQQVQKYEKGVNRV 60

Query: 61  GAARLQQIATALDVPVTFFYDGDNKAREVESLLFLDSAFSLRLLRAYSKIKDQTVQRQLV 120
           GAARLQQIATALDVPVTFFYDGDNKAREVESLLFLDSAFSLRLLRAYSKIKDQTVQRQLV
Sbjct: 61  GAARLQQIATALDVPVTFFYDGDNKAREVESLLFLDSAFSLRLLRAYSKIKDQTVQRQLV 120

Query: 121 SLMESIAANED 131
           +LMESIAANE+
Sbjct: 121 ALMESIAANEE 131


>ref|NP_769425.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 dbj|BAC48050.1| bll2785 [Bradyrhizobium japonicum USDA 110]
          Length = 134

 Score =  248 bits (633), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 123/128 (96%), Positives = 127/128 (99%)

Query: 3   RSAAKKMKQRSAGKPDIELGKRIRLRRVEQKISQAELGDKLGVSFQQVQKYEKGVNRVGA 62
           ++AAK+MKQRSAGKPDIELGKRIRLRRVE KISQAELG+KLGVSFQQVQKYEKGVNRVGA
Sbjct: 6   KTAAKRMKQRSAGKPDIELGKRIRLRRVEMKISQAELGEKLGVSFQQVQKYEKGVNRVGA 65

Query: 63  ARLQQIATALDVPVTFFYDGDNKAREVESLLFLDSAFSLRLLRAYSKIKDQTVQRQLVSL 122
           ARLQQIATALDVPVTFFYDGDNKAREVESLLFLDSAFSLRLLRAYSKIKDQTVQRQLVSL
Sbjct: 66  ARLQQIATALDVPVTFFYDGDNKAREVESLLFLDSAFSLRLLRAYSKIKDQTVQRQLVSL 125

Query: 123 MESIAANE 130
           MESIAANE
Sbjct: 126 MESIAANE 133


>ref|YP_004062619.1| transcriptional regulator protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gb|ADR52131.1| transcriptional regulator protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 145

 Score =  116 bits (291), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 59/126 (46%), Positives = 89/126 (70%), Gaps = 6/126 (4%)

Query: 11  QRSAGKPDIELGKRIRLRRVEQKISQAELGDKLGVSFQQVQKYEKGVNRVGAARLQQIAT 70
           +++    DI +GKRIRLRR    +SQ +LGD LG++FQQVQKYEKGVNRVGA+RLQ I+ 
Sbjct: 5   KKTPNPVDINVGKRIRLRRTILGMSQEKLGDSLGITFQQVQKYEKGVNRVGASRLQNISR 64

Query: 71  ALDVPVTFFYDGDNK------AREVESLLFLDSAFSLRLLRAYSKIKDQTVQRQLVSLME 124
           ALD+P++FF+D   +      + E   + FL S+  L+L R +++IKD  V+++++ L++
Sbjct: 65  ALDIPISFFFDDPPEVCSGALSEENNIMDFLSSSDGLQLNRHFTQIKDVKVRQKIIDLVK 124

Query: 125 SIAANE 130
           SI + E
Sbjct: 125 SIVSLE 130


>ref|YP_004277659.1| transcriptional regulator [Agrobacterium sp. H13-3]
 gb|ADY63339.1| transcriptional regulator [Agrobacterium sp. H13-3]
          Length = 140

 Score =  112 bits (281), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 62/126 (49%), Positives = 83/126 (65%), Gaps = 12/126 (9%)

Query: 18  DIELGKRIRLRRVEQKISQAELGDKLGVSFQQVQKYEKGVNRVGAARLQQIATALDVPVT 77
           DI +G RIRLRR    +SQ +LG+ LG++FQQ+QKYEKG NRVGA+RLQ I+  L+VPV+
Sbjct: 13  DIHVGSRIRLRRTMLGMSQEKLGESLGITFQQIQKYEKGTNRVGASRLQNISAILNVPVS 72

Query: 78  FFYD--------GDNKAREVES----LLFLDSAFSLRLLRAYSKIKDQTVQRQLVSLMES 125
           FF++        G     E  S    + FL SA  L+L RA+ KI D  V+R+LV L++S
Sbjct: 73  FFFEDAPGDQAVGTTGMAEASSSNYVVDFLSSAEGLQLNRAFVKIADPKVRRRLVDLVKS 132

Query: 126 IAANED 131
           +AA  D
Sbjct: 133 LAAEGD 138