BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0067.0014.p (439 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_772785.1| C4-dicarboxylate transporter DctA [Bradyrhizobi... 746 0.0 ref|YP_001927068.1| C4-dicarboxylate transporter DctA [Methyloba... 663 0.0 ref|YP_001641398.1| C4-dicarboxylate transporter DctA [Methyloba... 640 0.0 ref|YP_003070376.1| C4-dicarboxylic acid, orotate and citrate tr... 638 0.0 ref|YP_002965251.1| C4-dicarboxylic acid, orotate and citrate tr... 637 e-180 >ref|NP_772785.1| C4-dicarboxylate transporter DctA [Bradyrhizobium japonicum USDA 110] dbj|BAC51410.1| C4-dicarboxylate transport protein [Bradyrhizobium japonicum USDA 110] Length = 439 Score = 746 bits (1926), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/439 (87%), Positives = 402/439 (91%) Query: 1 MSTIAAEATIARKPVYTILFVQVLVALLLGIVIGMAAPDFAIGLKIFSDAFLKLISMIVA 60 MSTIAA RKP+Y LFVQVL AL LG+++GMA PDFAIGLKI SDAFLKLISMIVA Sbjct: 1 MSTIAAAPAAERKPLYASLFVQVLAALALGVILGMAVPDFAIGLKILSDAFLKLISMIVA 60 Query: 61 PIVFCVVVHGIAGAGDLKKVGRVGVKALVYFEAMTTVALVVGLLLAYLFGPGHGMNIDTS 120 PIVFCVVVHGIAGAGDLKKVGRVGVKALVYFE MTTVALVVGLLLAYLFGPGHGMNID S Sbjct: 61 PIVFCVVVHGIAGAGDLKKVGRVGVKALVYFEVMTTVALVVGLLLAYLFGPGHGMNIDPS 120 Query: 121 TLDAKALGNYASNAQKLKGEGIGSFLLNIIPTTSFDALSRNDVLQVLFFAIIFGVSLALV 180 TLDAKAL YA NA KL G GIG+FL+N+IPTTSFDALSRNDVLQVLFFA++FGV LALV Sbjct: 121 TLDAKALNTYADNAHKLSGGGIGAFLMNVIPTTSFDALSRNDVLQVLFFAVLFGVGLALV 180 Query: 181 GGEKGEKISSFIDAVSTVLFRAMGLIVRFAPIGVLGAVAYTVGKYGVGSLKQLLSLVALF 240 GGEKG ++S IDA STVLFR M LIVR AP+GVLGAVAYTVGKYGVGSLKQL+SLV LF Sbjct: 181 GGEKGALVTSIIDAASTVLFRVMELIVRVAPLGVLGAVAYTVGKYGVGSLKQLVSLVMLF 240 Query: 241 YVSVAIFVLGVLGAVMALAGINILKFLGYLREELMIVVATASSDAVLPQVMRKLERFGVK 300 YVSV IFVLGVLG VMALAGINILKFL YLREEL IV+ATASSDAVLPQ+M+KLER GVK Sbjct: 241 YVSVGIFVLGVLGGVMALAGINILKFLAYLREELTIVLATASSDAVLPQIMKKLERMGVK 300 Query: 301 DSVVGLVIPTGYSFNLDAFSIYLTLAVVFIAQATNTPLSFGDLMLVLGVSLITSKGAHGV 360 DSVVGLVIPTGYSFNLDAFSIYLTLAVVFIAQATNTPLSFGDL+LVLGVSLITSKGAHGV Sbjct: 301 DSVVGLVIPTGYSFNLDAFSIYLTLAVVFIAQATNTPLSFGDLLLVLGVSLITSKGAHGV 360 Query: 361 PGSAIVILAATLNAVPSIPAIGLVLVLSVDWFIGMARAVGNLIGNCVATVVVAAWEGDLD 420 PGSAIVILAATLNAVPSIPAIGLVLVLSVDWFIGMARA+GNL+GNCVATVVVAAWEGDLD Sbjct: 361 PGSAIVILAATLNAVPSIPAIGLVLVLSVDWFIGMARALGNLVGNCVATVVVAAWEGDLD 420 Query: 421 RDKARRVLEGAEAVDVTAG 439 R KA +VLEG E VDVTAG Sbjct: 421 RAKAAKVLEGGEMVDVTAG 439 >ref|YP_001927068.1| C4-dicarboxylate transporter DctA [Methylobacterium populi BJ001] gb|ACB82533.1| sodium:dicarboxylate symporter [Methylobacterium populi BJ001] Length = 438 Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/439 (76%), Positives = 385/439 (87%), Gaps = 1/439 (0%) Query: 1 MSTIAAEATIARKPVYTILFVQVLVALLLGIVIGMAAPDFAIGLKIFSDAFLKLISMIVA 60 MST AA AR P++ LFVQV+ LL GI++G+ AP A LK+ SDAFL+LI MIVA Sbjct: 1 MST-AATLPSARAPLHKSLFVQVIAGLLAGILVGVLAPGVAGVLKVLSDAFLRLIGMIVA 59 Query: 61 PIVFCVVVHGIAGAGDLKKVGRVGVKALVYFEAMTTVALVVGLLLAYLFGPGHGMNIDTS 120 PIVFCVVVHGIAGAGDL+KVGRVGVKAL+YFEAMT+VALV+GL LAYL GPGHGMN+D Sbjct: 60 PIVFCVVVHGIAGAGDLRKVGRVGVKALIYFEAMTSVALVLGLALAYLVGPGHGMNVDVG 119 Query: 121 TLDAKALGNYASNAQKLKGEGIGSFLLNIIPTTSFDALSRNDVLQVLFFAIIFGVSLALV 180 LDA ALG+YA +A KL+G GI FLL +IP T FDAL+RNDVLQVLFFA++FG SLALV Sbjct: 120 GLDAGALGSYADSAHKLQGGGIAQFLLAVIPKTVFDALARNDVLQVLFFAVLFGASLALV 179 Query: 181 GGEKGEKISSFIDAVSTVLFRAMGLIVRFAPIGVLGAVAYTVGKYGVGSLKQLLSLVALF 240 GGEK +S IDA++TVLF+AMGLIVR AP+GV GAVAYTVG+YG+GSL QLLSLVALF Sbjct: 180 GGEKARAVSDLIDALATVLFKAMGLIVRVAPLGVFGAVAYTVGRYGIGSLAQLLSLVALF 239 Query: 241 YVSVAIFVLGVLGAVMALAGINILKFLGYLREELMIVVATASSDAVLPQVMRKLERFGVK 300 Y++VA+FV +LGAVM LAG++++K L YLREEL IV+ T+SSDAVLPQVMRKL R GVK Sbjct: 240 YLAVALFVFVILGAVMRLAGLSLVKLLIYLREELTIVLGTSSSDAVLPQVMRKLARLGVK 299 Query: 301 DSVVGLVIPTGYSFNLDAFSIYLTLAVVFIAQATNTPLSFGDLMLVLGVSLITSKGAHGV 360 +S VGLV+PTGYSFNLDAFSIYLTLAVVFIAQATNTPLSFGDLMLVLGVSLITSKGAHGV Sbjct: 300 ESTVGLVVPTGYSFNLDAFSIYLTLAVVFIAQATNTPLSFGDLMLVLGVSLITSKGAHGV 359 Query: 361 PGSAIVILAATLNAVPSIPAIGLVLVLSVDWFIGMARAVGNLIGNCVATVVVAAWEGDLD 420 PGSAIVILAATLNAVPSIPAIGLVLVLSVDWF+G+ARA GNLIGNCVAT+VVAAWEGDLD Sbjct: 360 PGSAIVILAATLNAVPSIPAIGLVLVLSVDWFVGIARAAGNLIGNCVATIVVAAWEGDLD 419 Query: 421 RDKARRVLEGAEAVDVTAG 439 R++A RVL+G E+VD+TAG Sbjct: 420 RERAERVLDGRESVDLTAG 438 >ref|YP_001641398.1| C4-dicarboxylate transporter DctA [Methylobacterium extorquens PA1] gb|ABY32327.1| sodium:dicarboxylate symporter [Methylobacterium extorquens PA1] Length = 438 Score = 640 bits (1650), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/435 (76%), Positives = 382/435 (87%) Query: 5 AAEATIARKPVYTILFVQVLVALLLGIVIGMAAPDFAIGLKIFSDAFLKLISMIVAPIVF 64 AA + R P++ LFVQV+ LL GI++G AP FA LKI SDAFL+LI+MIVAPIVF Sbjct: 4 AATLSTERAPLHKSLFVQVIAGLLAGILVGALAPGFAAELKILSDAFLRLIAMIVAPIVF 63 Query: 65 CVVVHGIAGAGDLKKVGRVGVKALVYFEAMTTVALVVGLLLAYLFGPGHGMNIDTSTLDA 124 CVVVHGIAGAGDL KVGRVGVKAL+YFE MT++AL++GL LAYL GPGHGMNID ++LDA Sbjct: 64 CVVVHGIAGAGDLGKVGRVGVKALIYFEVMTSLALLLGLGLAYLVGPGHGMNIDVASLDA 123 Query: 125 KALGNYASNAQKLKGEGIGSFLLNIIPTTSFDALSRNDVLQVLFFAIIFGVSLALVGGEK 184 ALG YA +AQKL+G GI FLL IIP T+FDA +RNDVLQVLFFA++FGVSLALVGGEK Sbjct: 124 GALGGYADSAQKLQGGGIAHFLLAIIPKTAFDAFARNDVLQVLFFAVLFGVSLALVGGEK 183 Query: 185 GEKISSFIDAVSTVLFRAMGLIVRFAPIGVLGAVAYTVGKYGVGSLKQLLSLVALFYVSV 244 +S IDA+STVLF+AMGLIVR AP+GV GAVAYTVG+YG+GSL QLLSLVALFY++V Sbjct: 184 ARAVSGLIDALSTVLFKAMGLIVRVAPLGVFGAVAYTVGRYGIGSLAQLLSLVALFYLAV 243 Query: 245 AIFVLGVLGAVMALAGINILKFLGYLREELMIVVATASSDAVLPQVMRKLERFGVKDSVV 304 A+FV +LGAVM LAG++++K L YLREEL IV+ T+SSDAVLPQ+MRKL GVKDS V Sbjct: 244 ALFVFVILGAVMRLAGLSLVKLLIYLREELTIVLGTSSSDAVLPQIMRKLVHLGVKDSTV 303 Query: 305 GLVIPTGYSFNLDAFSIYLTLAVVFIAQATNTPLSFGDLMLVLGVSLITSKGAHGVPGSA 364 GLV+PTGYSFNLDAFSIYLTLAVVFIAQATNTPLSF DLMLVLGVSL+TSKGAHGVPGSA Sbjct: 304 GLVVPTGYSFNLDAFSIYLTLAVVFIAQATNTPLSFSDLMLVLGVSLVTSKGAHGVPGSA 363 Query: 365 IVILAATLNAVPSIPAIGLVLVLSVDWFIGMARAVGNLIGNCVATVVVAAWEGDLDRDKA 424 IVILAATLNAVPSIPAIGLVLVLSVDWF+G+AR++GNLIGNCVATVVVAAWEGDLDR++A Sbjct: 364 IVILAATLNAVPSIPAIGLVLVLSVDWFVGIARSLGNLIGNCVATVVVAAWEGDLDRERA 423 Query: 425 RRVLEGAEAVDVTAG 439 RVL+G E+++ TAG Sbjct: 424 VRVLDGRESLEPTAG 438 >ref|YP_003070376.1| C4-dicarboxylic acid, orotate and citrate transporter [Methylobacterium extorquens DM4] emb|CAX26562.1| C4-dicarboxylic acid, orotate and citrate transporter [Methylobacterium extorquens DM4] Length = 438 Score = 638 bits (1646), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/435 (76%), Positives = 382/435 (87%) Query: 5 AAEATIARKPVYTILFVQVLVALLLGIVIGMAAPDFAIGLKIFSDAFLKLISMIVAPIVF 64 AA R P++ LFVQV+ LL GI++G AP FA LKI SDAFL+LI+MIVAPIVF Sbjct: 4 AATLPTERAPLHKSLFVQVIAGLLAGILVGALAPGFAAELKILSDAFLRLIAMIVAPIVF 63 Query: 65 CVVVHGIAGAGDLKKVGRVGVKALVYFEAMTTVALVVGLLLAYLFGPGHGMNIDTSTLDA 124 CVVVHGIAGAGDL KVGRVGVKAL+YFE MT++AL++GL LAYL GPGHGMNID ++LDA Sbjct: 64 CVVVHGIAGAGDLGKVGRVGVKALIYFEVMTSLALLLGLGLAYLVGPGHGMNIDVASLDA 123 Query: 125 KALGNYASNAQKLKGEGIGSFLLNIIPTTSFDALSRNDVLQVLFFAIIFGVSLALVGGEK 184 ALG YA +AQKL+G GI FLL IIP T+FDA +RNDVLQVLFFA++FGVSLALVGGEK Sbjct: 124 GALGGYADSAQKLQGGGIAHFLLAIIPKTAFDAFARNDVLQVLFFAVLFGVSLALVGGEK 183 Query: 185 GEKISSFIDAVSTVLFRAMGLIVRFAPIGVLGAVAYTVGKYGVGSLKQLLSLVALFYVSV 244 + +S IDA+STVLF+AMGLIVR AP+GV GAVAYTVG+YG+GSL QLLSLVALFY++V Sbjct: 184 AKAVSGLIDALSTVLFKAMGLIVRVAPLGVFGAVAYTVGRYGIGSLAQLLSLVALFYLAV 243 Query: 245 AIFVLGVLGAVMALAGINILKFLGYLREELMIVVATASSDAVLPQVMRKLERFGVKDSVV 304 A+FV +LGAVM LAG++++K L YLREEL IV+ T+SSDAVLPQ+MRKL GVKDS V Sbjct: 244 ALFVFVILGAVMRLAGLSLVKLLIYLREELTIVLGTSSSDAVLPQIMRKLVHLGVKDSTV 303 Query: 305 GLVIPTGYSFNLDAFSIYLTLAVVFIAQATNTPLSFGDLMLVLGVSLITSKGAHGVPGSA 364 GLV+PTGYSFNLDAFSIYLTLAVVFIAQATNTPLSF DLMLVLGVSL+TSKGAHGVPGSA Sbjct: 304 GLVVPTGYSFNLDAFSIYLTLAVVFIAQATNTPLSFSDLMLVLGVSLVTSKGAHGVPGSA 363 Query: 365 IVILAATLNAVPSIPAIGLVLVLSVDWFIGMARAVGNLIGNCVATVVVAAWEGDLDRDKA 424 IVILAATLNAVPSIPAIGLVLVLSVDWF+G+AR++GNLIGNCVATVVVAAWEGDLDR++A Sbjct: 364 IVILAATLNAVPSIPAIGLVLVLSVDWFVGIARSLGNLIGNCVATVVVAAWEGDLDRERA 423 Query: 425 RRVLEGAEAVDVTAG 439 RVL+G E+++ TAG Sbjct: 424 VRVLDGRESLEPTAG 438 >ref|YP_002965251.1| C4-dicarboxylic acid, orotate and citrate transporter [methylobacterium extorquens AM1] gb|ACS41974.1| C4-dicarboxylic acid, orotate and citrate transporter [Methylobacterium extorquens AM1] Length = 438 Score = 637 bits (1642), Expect = e-180, Method: Compositional matrix adjust. Identities = 331/434 (76%), Positives = 380/434 (87%) Query: 5 AAEATIARKPVYTILFVQVLVALLLGIVIGMAAPDFAIGLKIFSDAFLKLISMIVAPIVF 64 AA R P++ LFVQV+ LL GI++G AP FA LKI SDAFL+LI+MIVAPIVF Sbjct: 4 AATLPTERAPLHKSLFVQVIAGLLAGILVGALAPGFAAELKILSDAFLRLIAMIVAPIVF 63 Query: 65 CVVVHGIAGAGDLKKVGRVGVKALVYFEAMTTVALVVGLLLAYLFGPGHGMNIDTSTLDA 124 CVVVHGIAGAGDL KVGRVGVKAL+YFE MT++AL++GL LAYL GPGHGMNID ++LDA Sbjct: 64 CVVVHGIAGAGDLGKVGRVGVKALIYFEVMTSLALLLGLGLAYLVGPGHGMNIDVASLDA 123 Query: 125 KALGNYASNAQKLKGEGIGSFLLNIIPTTSFDALSRNDVLQVLFFAIIFGVSLALVGGEK 184 ALG YA +AQKL+G GI FLL IIP T+FDA +RNDVLQVLFFA++FGVSLALVGGEK Sbjct: 124 GALGGYADSAQKLQGGGIAHFLLAIIPKTAFDAFARNDVLQVLFFAVLFGVSLALVGGEK 183 Query: 185 GEKISSFIDAVSTVLFRAMGLIVRFAPIGVLGAVAYTVGKYGVGSLKQLLSLVALFYVSV 244 +S IDA+STVLF+AMGLIVR AP+GV GAVAYTVG+YG+GSL QLLSLVALFY++V Sbjct: 184 ARAVSGLIDALSTVLFKAMGLIVRVAPLGVFGAVAYTVGRYGIGSLAQLLSLVALFYLAV 243 Query: 245 AIFVLGVLGAVMALAGINILKFLGYLREELMIVVATASSDAVLPQVMRKLERFGVKDSVV 304 A+FV +LGAVM LAG++++K L YLREEL IV+ T+SSDAVLPQ+MRKL GVKDS V Sbjct: 244 ALFVFMILGAVMRLAGLSLVKLLIYLREELTIVLGTSSSDAVLPQIMRKLVHLGVKDSTV 303 Query: 305 GLVIPTGYSFNLDAFSIYLTLAVVFIAQATNTPLSFGDLMLVLGVSLITSKGAHGVPGSA 364 GLV+PTGYSFNLDAFSIYLTLAVVFIAQATNTPLSF DLMLVLGVSL+TSKGAHGVPGSA Sbjct: 304 GLVVPTGYSFNLDAFSIYLTLAVVFIAQATNTPLSFSDLMLVLGVSLVTSKGAHGVPGSA 363 Query: 365 IVILAATLNAVPSIPAIGLVLVLSVDWFIGMARAVGNLIGNCVATVVVAAWEGDLDRDKA 424 IVILAATLNAVPSIPAIGLVLVLSVDWF+G+AR++GNLIGNCVATVVVAAWEGDLDR++A Sbjct: 364 IVILAATLNAVPSIPAIGLVLVLSVDWFVGIARSLGNLIGNCVATVVVAAWEGDLDRERA 423 Query: 425 RRVLEGAEAVDVTA 438 RVL+G E+++ TA Sbjct: 424 VRVLDGRESLEPTA 437