BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0067.0005.p (364 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_770415.1| formate dehydrogenase [Bradyrhizobium japonicum... 620 e-176 ref|ZP_08627310.1| periplasmic molybdate-binding domain-containi... 617 e-174 ref|YP_001239822.1| molybdate metabolism transcriptional regulat... 578 e-163 ref|YP_002288099.1| transcriptional regulator of molybdate metab... 567 e-159 ref|ZP_07025243.1| transcriptional regulator of molybdate metabo... 563 e-158 >ref|NP_770415.1| formate dehydrogenase [Bradyrhizobium japonicum USDA 110] dbj|BAC49040.1| bll3775 [Bradyrhizobium japonicum USDA 110] Length = 360 Score = 620 bits (1600), Expect = e-176, Method: Compositional matrix adjust. Identities = 298/361 (82%), Positives = 327/361 (90%), Gaps = 1/361 (0%) Query: 4 MLQIEIETVWRFRKEDSPQTAVVMLGILNEIRKTGKITSAANDAQLSYRHVWNLIEQWTG 63 MLQIEIE VWRFR+E SP+TAVVMLG+LNEIRKTGKITSAA DA LSYRHVWNLIEQW+ Sbjct: 1 MLQIEIEAVWRFRQEGSPRTAVVMLGVLNEIRKTGKITSAAADAHLSYRHVWNLIEQWSE 60 Query: 64 FFGVPLVETQRGKGSKLTPFGEKLVWAGERMQARLGLQLENLAQELVTEIKPFLEQRPSV 123 FFG PLVETQRGKGS+LTPFGE+LVWAGERMQARLG QLENLAQEL +EIKPFLEQRPSV Sbjct: 61 FFGTPLVETQRGKGSRLTPFGERLVWAGERMQARLGPQLENLAQELASEIKPFLEQRPSV 120 Query: 124 IRVHASHGFAVSKLREFLDRAGGVGVDLRYVSNQNSLVSLAQGACDLSGVHLPRGELRAQ 183 IRVHASHGFAV+KLREFLDR G+GVDLRYVSNQ+SLVSLAQGACDLSG+HLP G LRAQ Sbjct: 121 IRVHASHGFAVAKLREFLDREPGIGVDLRYVSNQHSLVSLAQGACDLSGLHLPHGALRAQ 180 Query: 184 GIKACREWLDPREDRVINFVTREMGLMVKRGNPLKITSLKDLVERKARFVNRDHDSGTRL 243 GIKA REWLDPREDRVI+FVTREMGLMV RGNPL I +++DL K RFVNRDHDSGTRL Sbjct: 181 GIKAAREWLDPREDRVISFVTREMGLMVARGNPLGIETIEDLTRPKVRFVNRDHDSGTRL 240 Query: 244 LFDQLLALHKIPEGRINGAQHMEFTHAAVAAYVASGMADASFGVEAAARQFGLDFIRLLT 303 LFDQLLA H I E RINGAQ +EFTHAAVAAYVASGMADASFGVEAAAR FGLDFIR++T Sbjct: 241 LFDQLLAAHSIDESRINGAQQIEFTHAAVAAYVASGMADASFGVEAAARHFGLDFIRIVT 300 Query: 304 EDYFFVCRRAFLETEPMQRVLDIMKSSEFHKAVGALPGYVASNTGAVSAVKEFLEKLHSD 363 EDYFFVC+RAFL+TEPMQR+LDIM+S++F AV +LPGYV S+TGAV+ VK FLE +H+ Sbjct: 301 EDYFFVCKRAFLDTEPMQRILDIMRSADFRAAVASLPGYVPSDTGAVTGVKAFLE-MHAV 359 Query: 364 R 364 R Sbjct: 360 R 360 >ref|ZP_08627310.1| periplasmic molybdate-binding domain-containing protein [Bradyrhizobiaceae bacterium SG-6C] gb|EGP09936.1| periplasmic molybdate-binding domain-containing protein [Bradyrhizobiaceae bacterium SG-6C] Length = 375 Score = 617 bits (1591), Expect = e-174, Method: Compositional matrix adjust. Identities = 292/355 (82%), Positives = 318/355 (89%) Query: 4 MLQIEIETVWRFRKEDSPQTAVVMLGILNEIRKTGKITSAANDAQLSYRHVWNLIEQWTG 63 MLQIEIE VWRF KE S QT VMLG+LN+IR +GK+TSAA+ A LSYRHVWNL+EQW+ Sbjct: 1 MLQIEIEPVWRFHKEGSTQTVAVMLGVLNDIRTSGKLTSAADHAGLSYRHVWNLVEQWSD 60 Query: 64 FFGVPLVETQRGKGSKLTPFGEKLVWAGERMQARLGLQLENLAQELVTEIKPFLEQRPSV 123 FFGVPLVET RGKG+ LT FGEKLVWAG+RMQARLG QLENLAQEL TEIKPFL QRPSV Sbjct: 61 FFGVPLVETHRGKGTTLTAFGEKLVWAGQRMQARLGPQLENLAQELATEIKPFLHQRPSV 120 Query: 124 IRVHASHGFAVSKLREFLDRAGGVGVDLRYVSNQNSLVSLAQGACDLSGVHLPRGELRAQ 183 IRVHASHGFAVSKLRE LD+ G+GVDLRYVSNQNSLVSLAQGACDLSGVH+PRGELRAQ Sbjct: 121 IRVHASHGFAVSKLRELLDKEPGIGVDLRYVSNQNSLVSLAQGACDLSGVHIPRGELRAQ 180 Query: 184 GIKACREWLDPREDRVINFVTREMGLMVKRGNPLKITSLKDLVERKARFVNRDHDSGTRL 243 +KACR+WLDPREDRVI+FVTREMGLMVK+GNPLKI SLKDLV +ARFVNRDHDSGTR+ Sbjct: 181 SVKACRDWLDPREDRVISFVTREMGLMVKKGNPLKIGSLKDLVTTRARFVNRDHDSGTRM 240 Query: 244 LFDQLLALHKIPEGRINGAQHMEFTHAAVAAYVASGMADASFGVEAAARQFGLDFIRLLT 303 LFDQLLA HKI E +INGAQ MEFTHAAVAAYVASGMADA+FGVEAAARQFGLDF+RLLT Sbjct: 241 LFDQLLAQHKIGEAKINGAQQMEFTHAAVAAYVASGMADAAFGVEAAARQFGLDFVRLLT 300 Query: 304 EDYFFVCRRAFLETEPMQRVLDIMKSSEFHKAVGALPGYVASNTGAVSAVKEFLE 358 EDYFFVCRRAFL+TEPMQRVLD+MK FH+AV LPGY+A G VS VKEFL+ Sbjct: 301 EDYFFVCRRAFLDTEPMQRVLDVMKGDAFHEAVAQLPGYIAQQPGTVSTVKEFLD 355 >ref|YP_001239822.1| molybdate metabolism transcriptional regulator [Bradyrhizobium sp. BTAi1] gb|ABQ35916.1| transcriptional regulator of molybdate metabolism, LysR family [Bradyrhizobium sp. BTAi1] Length = 361 Score = 578 bits (1491), Expect = e-163, Method: Compositional matrix adjust. Identities = 272/357 (76%), Positives = 312/357 (87%) Query: 4 MLQIEIETVWRFRKEDSPQTAVVMLGILNEIRKTGKITSAANDAQLSYRHVWNLIEQWTG 63 ML+I IE VWRF K+D P + VVML +L+EIR+TGKITSAA DAQLSYRHVWNLIEQW+ Sbjct: 1 MLRIAIEPVWRFSKDDDPHSIVVMLRVLSEIRRTGKITSAATDAQLSYRHVWNLIEQWSA 60 Query: 64 FFGVPLVETQRGKGSKLTPFGEKLVWAGERMQARLGLQLENLAQELVTEIKPFLEQRPSV 123 FFGVPLVE QRGKGS+LT FG+KLVWAGERM ARLG QL+NLAQELVTEIKPFL+ P++ Sbjct: 61 FFGVPLVEAQRGKGSRLTAFGDKLVWAGERMHARLGPQLDNLAQELVTEIKPFLQPHPAL 120 Query: 124 IRVHASHGFAVSKLREFLDRAGGVGVDLRYVSNQNSLVSLAQGACDLSGVHLPRGELRAQ 183 IRVHASHGFAV+KLRE LDRA GVG+DLRYVS+Q+SL SLAQ ACDLSG+HLPRGELRAQ Sbjct: 121 IRVHASHGFAVAKLRELLDRAPGVGIDLRYVSSQHSLASLAQDACDLSGLHLPRGELRAQ 180 Query: 184 GIKACREWLDPREDRVINFVTREMGLMVKRGNPLKITSLKDLVERKARFVNRDHDSGTRL 243 I+ACR+WLDP D VI+FVTREMGLMVKRGNPL I SL DL E KARFVNRDHDSGTRL Sbjct: 181 SIQACRDWLDPERDCVISFVTREMGLMVKRGNPLSIRSLADLAEGKARFVNRDHDSGTRL 240 Query: 244 LFDQLLALHKIPEGRINGAQHMEFTHAAVAAYVASGMADASFGVEAAARQFGLDFIRLLT 303 LFDQLLA H + E +INGAQ +EFTHAAVAAYVASGMAD SFGVEAAARQFGLDFIR+LT Sbjct: 241 LFDQLLAAHGLDEQQINGAQQIEFTHAAVAAYVASGMADVSFGVEAAARQFGLDFIRILT 300 Query: 304 EDYFFVCRRAFLETEPMQRVLDIMKSSEFHKAVGALPGYVASNTGAVSAVKEFLEKL 360 EDYFF C ++FLE++PM+RVLD+MK +FH+ + ALPGY ++TG+V V+EFL++ Sbjct: 301 EDYFFACHQSFLESDPMRRVLDVMKGDDFHREIAALPGYAPADTGSVHTVREFLDRF 357 >ref|YP_002288099.1| transcriptional regulator of molybdate metabolism, LysR family [Oligotropha carboxidovorans OM5] ref|YP_004633797.1| LysR family transcriptional regulator [Oligotropha carboxidovorans OM5] gb|ACI92234.1| transcriptional regulator of molybdate metabolism, LysR family [Oligotropha carboxidovorans OM5] gb|AEI03978.1| transcriptional regulator, LysR family [Oligotropha carboxidovorans OM4] gb|AEI07556.1| transcriptional regulator, LysR family [Oligotropha carboxidovorans OM5] Length = 391 Score = 567 bits (1461), Expect = e-159, Method: Compositional matrix adjust. Identities = 272/360 (75%), Positives = 306/360 (85%), Gaps = 1/360 (0%) Query: 4 MLQIEIETVWRFRKEDSPQTAVVMLGILNEIRKTGKITSAANDAQLSYRHVWNLIEQWTG 63 ML IEIE VWRFRKE SPQ A+VMLGILNEIR+TGK+TSAA+ A LSYRHVWNLIEQW+ Sbjct: 1 MLHIEIEPVWRFRKEGSPQAAIVMLGILNEIRQTGKLTSAASHANLSYRHVWNLIEQWSA 60 Query: 64 FFGVPLVETQRGKGSKLTPFGEKLVWAGERMQARLGLQLENLAQELVTEIKPFLEQRPSV 123 FFG PLVE QRG+G+ LTPFGEKLVWAG+R++ARLG QL+NLAQEL +EIKPFL Q+PSV Sbjct: 61 FFGAPLVERQRGRGTTLTPFGEKLVWAGQRLEARLGPQLQNLAQELASEIKPFLHQQPSV 120 Query: 124 IRVHASHGFAVSKLREFLDRAGGVGVDLRYVSNQNSLVSLAQGACDLSGVHLPRGELRAQ 183 IRVHASHGFAVSKLRE LDR +GVDLRYVSNQNSLVSLAQ ACDLSGVHLPRG LR Q Sbjct: 121 IRVHASHGFAVSKLREMLDRLPALGVDLRYVSNQNSLVSLAQNACDLSGVHLPRGPLREQ 180 Query: 184 GIKACREWLDPREDRVINFVTREMGLMVKRGNPLKITSLKDLVERKARFVNRDHDSGTRL 243 I++C EWLDPREDRVI+ VTREMGLMVKRGNPL I SL+DLV R ARFVNRDHDSGTR Sbjct: 181 NIRSCLEWLDPREDRVISLVTREMGLMVKRGNPLNIHSLEDLVARNARFVNRDHDSGTRQ 240 Query: 244 LFDQLLALHKIPEGRINGAQHMEFTHAAVAAYVASGMADASFGVEAAARQFGLDFIRLLT 303 +F+QLL LH + ++ Q +EFTHAAVAA+VAS MADASFGVEAAARQFGLDFI LLT Sbjct: 241 VFNQLLELHGVNPSALHETQ-LEFTHAAVAAFVASNMADASFGVEAAARQFGLDFIPLLT 299 Query: 304 EDYFFVCRRAFLETEPMQRVLDIMKSSEFHKAVGALPGYVASNTGAVSAVKEFLEKLHSD 363 EDYFFVC RAFL+T PMQ +LD+MK EF A+ LPGY ASN G +SAVK+F E + ++ Sbjct: 300 EDYFFVCHRAFLDTLPMQHLLDLMKGEEFRDAIANLPGYSASNPGQISAVKDFFESMAAE 359 >ref|ZP_07025243.1| transcriptional regulator of molybdate metabolism, LysR family [Afipia sp. 1NLS2] gb|EFI52385.1| transcriptional regulator of molybdate metabolism, LysR family [Afipia sp. 1NLS2] Length = 398 Score = 563 bits (1450), Expect = e-158, Method: Compositional matrix adjust. Identities = 269/357 (75%), Positives = 300/357 (84%), Gaps = 1/357 (0%) Query: 4 MLQIEIETVWRFRKEDSPQTAVVMLGILNEIRKTGKITSAANDAQLSYRHVWNLIEQWTG 63 ML IEIE VWRFRKE SPQ A+VMLGILNEIR+TGK+TSAA A LSYRHVWNLIEQW+ Sbjct: 1 MLHIEIEPVWRFRKEGSPQAAIVMLGILNEIRQTGKLTSAATHANLSYRHVWNLIEQWSA 60 Query: 64 FFGVPLVETQRGKGSKLTPFGEKLVWAGERMQARLGLQLENLAQELVTEIKPFLEQRPSV 123 FFG PLVE QRG+G+ LTPFGEKLVWAG+R++ARLG QL+NLAQEL +EIKPFL Q PSV Sbjct: 61 FFGAPLVERQRGRGTTLTPFGEKLVWAGQRLEARLGPQLQNLAQELASEIKPFLHQEPSV 120 Query: 124 IRVHASHGFAVSKLREFLDRAGGVGVDLRYVSNQNSLVSLAQGACDLSGVHLPRGELRAQ 183 IRVHASHGFAVSKLRE LDR +GVDLRYVSNQNSLVSLAQ ACDLSGVHLPRG LR Q Sbjct: 121 IRVHASHGFAVSKLREMLDRLPALGVDLRYVSNQNSLVSLAQNACDLSGVHLPRGPLREQ 180 Query: 184 GIKACREWLDPREDRVINFVTREMGLMVKRGNPLKITSLKDLVERKARFVNRDHDSGTRL 243 I++C EWLDP+EDRVI+ VTREMGLM KRGNPLKI SL+DLV KARFVNRDHDSGTR Sbjct: 181 NIRSCLEWLDPKEDRVISLVTREMGLMTKRGNPLKIHSLEDLVAHKARFVNRDHDSGTRQ 240 Query: 244 LFDQLLALHKIPEGRINGAQHMEFTHAAVAAYVASGMADASFGVEAAARQFGLDFIRLLT 303 +F+QLL LH I + Q +EFTHAAVAA+VAS MADA+FGVEAAARQFGLDFI LLT Sbjct: 241 VFNQLLELHHIDPSAVQETQ-LEFTHAAVAAFVASDMADATFGVEAAARQFGLDFIPLLT 299 Query: 304 EDYFFVCRRAFLETEPMQRVLDIMKSSEFHKAVGALPGYVASNTGAVSAVKEFLEKL 360 EDYFFVC RAFLET+PMQ +LD+MK EF A+ LPGY AS G +S V++F E + Sbjct: 300 EDYFFVCHRAFLETQPMQHLLDLMKGEEFRNAIANLPGYSASRPGEISLVRDFFESM 356