BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0067.0002.p (325 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001238860.1| hypothetical protein BBta_2825 [Bradyrhizobi... 484 e-135 ref|NP_769451.1| hypothetical protein blr2811 [Bradyrhizobium ja... 480 e-133 ref|YP_001204537.1| putative transmembrane protein [Bradyrhizobi... 466 e-129 ref|YP_486860.1| hypothetical protein RPB_3253 [Rhodopseudomonas... 392 e-107 ref|YP_004109679.1| hypothetical protein Rpdx1_3375 [Rhodopseudo... 383 e-104 >ref|YP_001238860.1| hypothetical protein BBta_2825 [Bradyrhizobium sp. BTAi1] gb|ABQ34954.1| hypothetical protein BBta_2825 [Bradyrhizobium sp. BTAi1] Length = 317 Score = 484 bits (1247), Expect = e-135, Method: Compositional matrix adjust. Identities = 242/317 (76%), Positives = 275/317 (86%), Gaps = 1/317 (0%) Query: 8 VPLSLPAKTAPAATSKAPARTDRPFKGIALILLSTVFLGTSDVTAKYLSSTLPSIEIAWI 67 +P SLP K P A +APARTDRPF+GIALILLSTVFLGTSDVTAKYLS TLP+IEI WI Sbjct: 1 MPTSLPQK-PPVARKRAPARTDRPFRGIALILLSTVFLGTSDVTAKYLSKTLPAIEITWI 59 Query: 68 RFLVFAMIMTPAMLPGSPLFALRSSRPGLHVLRGAALLGSSLIFITGLGFLPIAEASATS 127 RF VFA+IM PAM+PGSPLFA+R+ R +LRG ALLGSS+ FITGLG+LPIAEASAT Sbjct: 60 RFTVFALIMVPAMIPGSPLFAMRTERLPFQLLRGVALLGSSIFFITGLGYLPIAEASATG 119 Query: 128 FVSPLFVTALSIAFLGERVGMRRWIATAVGLAGVFIILRPGTSAFHPAAIFPLVSALAWA 187 FV+PLFVTALSI FLGE+VG+RRWIATAVGL GV IILRPGT AFH AA+FP+ SA +WA Sbjct: 120 FVAPLFVTALSIIFLGEKVGLRRWIATAVGLCGVLIILRPGTGAFHLAALFPIASAFSWA 179 Query: 188 GTLILTRMMSGSERPITVMTYSSIVGVAIVSALVPFVWVTPSWHDIMFGILIGVASTVGQ 247 TLI+TR+MSG E IT+MTYSSI G+ ++SA+VPFVW+TPSW DI FG+L+GVAST+GQ Sbjct: 180 CTLIMTRIMSGREHAITIMTYSSIAGLCLLSAMVPFVWITPSWQDIGFGVLVGVASTMGQ 239 Query: 248 WIVVLAFRYGDASVLAPFSYTQLLWVSILGFLIFGEVPDSWTILGAGFIVASGLYTAHRE 307 WIVVLAFRY DASVLAPFSYTQLLWVS+LGF +FGEVP WT++GA FIV+SGLYTAHRE Sbjct: 240 WIVVLAFRYADASVLAPFSYTQLLWVSLLGFFVFGEVPSIWTVVGAAFIVSSGLYTAHRE 299 Query: 308 RVRRSQLLTVASEPSPN 324 RVRRSQLL VA E SPN Sbjct: 300 RVRRSQLLQVAGESSPN 316 >ref|NP_769451.1| hypothetical protein blr2811 [Bradyrhizobium japonicum USDA 110] dbj|BAC48076.1| blr2811 [Bradyrhizobium japonicum USDA 110] Length = 328 Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust. Identities = 247/324 (76%), Positives = 274/324 (84%), Gaps = 3/324 (0%) Query: 2 AARLDSVPLSLPAKTAPAATSKAPARTDRPFKGIALILLSTVFLGTSDVTAKYLSSTLPS 61 AARLDS+ +S+P K +APAR D PFKGIALILLSTVFLG SD+TAKYLS++LPS Sbjct: 8 AARLDSISVSMPEKKH--VGRRAPARVDHPFKGIALILLSTVFLGCSDITAKYLSTSLPS 65 Query: 62 IEIAWIRFLVFAMIMTPAMLPGSPLFALRSSRPGLHVLRGAALLGSSLIFITGLGFLPIA 121 I+I WIRFL FA++ TP MLP SPL+A+R+ R GLHV+RGAALLGSSL FITGL FLPIA Sbjct: 66 IQITWIRFLTFALMFTPVMLPASPLYAMRTQRLGLHVMRGAALLGSSLFFITGLRFLPIA 125 Query: 122 EASATSFVSPLFVTALSIAFLGERVGMRRWIATAVGLAGVFIILRPGTSAFHPAAIFPLV 181 EASAT FV+PLFVTALSI FLGE+VGMRRW ATA+GL GV IILRPGTSAFH AA FP+V Sbjct: 126 EASATGFVAPLFVTALSIVFLGEKVGMRRWFATALGLIGVLIILRPGTSAFHLAAFFPVV 185 Query: 182 SALAWAGTLILTRMMSGSERPITVMTYSSIVGVAIVSALVPFVWVTPSWHDIMFGILIGV 241 SA WAGTLILTRMMSG E IT M YSS+ G+AI++A+VPFVWVTPSW I GI IGV Sbjct: 186 SAACWAGTLILTRMMSGREAVITTMAYSSLTGLAILTAMVPFVWVTPSWTAIALGIFIGV 245 Query: 242 ASTVGQWIVVLAFRYGDASVLAPFSYTQLLWVSILGFLIFGEVPDSWTILGAGFIVASGL 301 AST GQWIVVLA+RYGDASVLAPFSYTQLLWVSILGF IFGEVPD WT++GA FIVASGL Sbjct: 246 ASTAGQWIVVLAYRYGDASVLAPFSYTQLLWVSILGFFIFGEVPDVWTVVGAAFIVASGL 305 Query: 302 YTAHRERVRRSQLLTVASEPSPNA 325 Y AHRERVRR+QLL V E SPNA Sbjct: 306 YIAHRERVRRAQLL-VLEERSPNA 328 >ref|YP_001204537.1| putative transmembrane protein [Bradyrhizobium sp. ORS 278] emb|CAL76300.1| conserved hypothetical protein; putative transmembrane protein [Bradyrhizobium sp. ORS 278] Length = 317 Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust. Identities = 234/294 (79%), Positives = 262/294 (89%) Query: 31 PFKGIALILLSTVFLGTSDVTAKYLSSTLPSIEIAWIRFLVFAMIMTPAMLPGSPLFALR 90 PF+GIALILLSTVFLGTSDVTAKYLS TLPSIEI WIRF+VFA+IM PAM+PGSPLFA+R Sbjct: 23 PFRGIALILLSTVFLGTSDVTAKYLSKTLPSIEITWIRFVVFALIMVPAMIPGSPLFAMR 82 Query: 91 SSRPGLHVLRGAALLGSSLIFITGLGFLPIAEASATSFVSPLFVTALSIAFLGERVGMRR 150 + R LH+LRG ALLGSS++FI+GL +LPIAEASAT FV+PLFVTALSI FL E+VG+RR Sbjct: 83 TERVPLHLLRGIALLGSSIMFISGLRYLPIAEASATGFVAPLFVTALSIIFLHEKVGLRR 142 Query: 151 WIATAVGLAGVFIILRPGTSAFHPAAIFPLVSALAWAGTLILTRMMSGSERPITVMTYSS 210 WIATAVGL GV IILRPGT AFH AA+FP+ SA AWA TLI+TRMMSG E IT+MTYSS Sbjct: 143 WIATAVGLFGVLIILRPGTGAFHLAALFPIASAFAWACTLIMTRMMSGREHAITIMTYSS 202 Query: 211 IVGVAIVSALVPFVWVTPSWHDIMFGILIGVASTVGQWIVVLAFRYGDASVLAPFSYTQL 270 I GV ++SA+VPFVW TPSW DI FG+L+GVAST+GQWIVVLAFRY DASVLAPFSYTQL Sbjct: 203 IAGVCLLSAMVPFVWTTPSWQDIGFGVLVGVASTMGQWIVVLAFRYADASVLAPFSYTQL 262 Query: 271 LWVSILGFLIFGEVPDSWTILGAGFIVASGLYTAHRERVRRSQLLTVASEPSPN 324 LWVSILGFL+FGE+PD WTI+GA FIV+SGLYTAHRERVRRSQLL VA E SPN Sbjct: 263 LWVSILGFLVFGELPDVWTIVGAAFIVSSGLYTAHRERVRRSQLLQVAGESSPN 316 >ref|YP_486860.1| hypothetical protein RPB_3253 [Rhodopseudomonas palustris HaA2] gb|ABD07949.1| Protein of unknown function DUF6, transmembrane [Rhodopseudomonas palustris HaA2] Length = 310 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 199/299 (66%), Positives = 242/299 (80%), Gaps = 5/299 (1%) Query: 27 RTDRPFKGIALILLSTVFLGTSDVTAKYLSSTLPSIEIAWIRFLVFAMIMTPAML-PGSP 85 D P +GIALI+ ST FL SD AKYL TLP IEI WIRFLVF +IM P ML SP Sbjct: 15 HADHPLRGIALIVASTAFLACSDTMAKYLGRTLPPIEIGWIRFLVFLLIMLPVMLTSASP 74 Query: 86 LFALRSSRPGLHVLRGAALLGSSLIFITGLGFLPIAEASATSFVSPLFVTALSIAFLGER 145 L RS+RP L VLR AL+ SS++FITGL FLPIAEASATSFV+PLFVTALSI LGE Sbjct: 75 L---RSARPKLQVLRALALVASSVLFITGLQFLPIAEASATSFVAPLFVTALSIVLLGEA 131 Query: 146 VGMRRWIATAVGLAGVFIILRPGTSAFHPAAIFPLVSALAWAGTLILTRMMSGSERPITV 205 +G+RRW ATAVGL GV I++RPG++AF+ AAIFP++SAL WA TLILTRM+SG++R + Sbjct: 132 IGIRRWAATAVGLLGVLIVIRPGSAAFNAAAIFPILSALTWAFTLILTRMISGADRVVVT 191 Query: 206 MTYSSIVGVAIVSALVPFVWVTPSWHDIMFGILIGVASTVGQWIVVLAFRYGDASVLAPF 265 MT+S++VG +SA+VPFVWVTPSWHDI+ G+L+G+AST+GQWIVVLA+RY DASVLAPF Sbjct: 192 MTFSALVGFVALSAMVPFVWVTPSWHDILIGVLVGLASTMGQWIVVLAYRYADASVLAPF 251 Query: 266 SYTQLLWVSILGFLIFGEVPDSWTILGAGFIVASGLYTAHRERVRRSQLLTVASEPSPN 324 +Y+QL+WV+ LGF +FGE+PD WT +GA I+ASG+YTAHRER+RR Q V +EPSPN Sbjct: 252 TYSQLVWVTFLGFGVFGEIPDLWTFVGAAVIMASGIYTAHRERLRRKQ-PPVPAEPSPN 309 >ref|YP_004109679.1| hypothetical protein Rpdx1_3375 [Rhodopseudomonas palustris DX-1] gb|ADU44946.1| protein of unknown function DUF6 transmembrane [Rhodopseudomonas palustris DX-1] Length = 356 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 203/328 (61%), Positives = 247/328 (75%), Gaps = 7/328 (2%) Query: 2 AARLDSVPLSLPAKTAPAATSKAPAR-----TDRPFKGIALILLSTVFLGTSDVTAKYLS 56 AARL S P A T + ++ A R D P +GIALI+ STVFL SD AKYL Sbjct: 30 AARLLSSPKRYRALTVTSPSNDAVRRLTHRHADHPLRGIALIVGSTVFLACSDTLAKYLG 89 Query: 57 STLPSIEIAWIRFLVFAMIMTPAMLPGSPLFALRSSRPGLHVLRGAALLGSSLIFITGLG 116 TLP +EI WIRFLVF +IM P L S LRS+RP L VLR AL+ SS++FITGL Sbjct: 90 RTLPPVEIGWIRFLVFVLIMIPVAL-ASKEAPLRSARPKLQVLRALALVASSVLFITGLQ 148 Query: 117 FLPIAEASATSFVSPLFVTALSIAFLGERVGMRRWIATAVGLAGVFIILRPGTSAFHPAA 176 FLPIAEASATSFV+PLFVTALSI LGE VG+RRWIAT VGL GV I++RPG++AF PA Sbjct: 149 FLPIAEASATSFVAPLFVTALSIPLLGEHVGIRRWIATLVGLVGVLIVIRPGSAAFDPAV 208 Query: 177 IFPLVSALAWAGTLILTRMMSGSERPITVMTYSSIVGVAIVSALVPFVWVTPSWHDIMFG 236 + P++SAL WA TL LTRM+SG++R + M++S++VG +SALVPFVWVTPSWHDI G Sbjct: 209 VLPILSALGWALTLTLTRMISGADRAVVTMSFSAVVGFVTLSALVPFVWVTPSWHDIGIG 268 Query: 237 ILIGVASTVGQWIVVLAFRYGDASVLAPFSYTQLLWVSILGFLIFGEVPDSWTILGAGFI 296 +L+G+AST+GQW+VVLA+RY DASVLAPF+Y+QL+WVS LGF +FGEVPD WT GA I Sbjct: 269 LLVGLASTMGQWVVVLAYRYADASVLAPFTYSQLVWVSFLGFGVFGEVPDLWTFAGAAVI 328 Query: 297 VASGLYTAHRERVRRSQLLTVASEPSPN 324 + SG+YTAHRER+RR Q + SEP P+ Sbjct: 329 IGSGIYTAHRERLRRRQ-PALPSEPYPS 355