BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0066.0086.p (409 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00053199.2| COG0683: ABC-type branched-chain amino acid t... 305 1e-80 ref|YP_003450458.1| branched-chain amino acid transport system s... 300 2e-79 ref|YP_421393.1| ABC-type branched-chain amino acid transport sy... 292 8e-77 ref|ZP_00053652.1| COG0683: ABC-type branched-chain amino acid t... 252 6e-65 ref|YP_421824.1| ABC-type branched-chain amino acid transport sy... 251 1e-64 >ref|ZP_00053199.2| COG0683: ABC-type branched-chain amino acid transport systems, periplasmic component [Magnetospirillum magnetotacticum MS-1] Length = 417 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 164/406 (40%), Positives = 247/406 (60%), Gaps = 4/406 (0%) Query: 7 KDLTRR---TVLGSGMGLAAGLMPWHASAASRTVKVGSIMPSSGVLAFPGQACVRGINLG 63 + +TRR T +G + + +P ++ A+ +K+G ++P SG LA GQAC RG +G Sbjct: 12 RTITRRQFTTAAAAGALVTSTGLPLRSARAATPLKLGVLLPRSGHLALIGQACQRGAEIG 71 Query: 64 AKFAKERFGVEMEIVHADTQSKPENGRIAADNLIRQGCTVLIGAWDSGATISALQAAEAA 123 K+ G +E+++ADT+S P+ GR A+ LIR+G +L+G +DS T++ AEA Sbjct: 72 LPMLKD-MGYSVELMNADTESNPDVGRTQAEKLIREGANMLMGCFDSATTLAVAGVAEAK 130 Query: 124 KVPMVVHIASATQVTSQGFTQVFRFYPTSLTIVRQSLLELKAILSSVENPPKSAAVLHLN 183 VP VV+IAS ++T QGF VFR +P++ + + LL K I ++ PK+A +LH+N Sbjct: 131 GVPFVVNIASEPKLTEQGFKYVFRNFPSAGMLGKGGLLLYKDIFAATGVTPKTAVLLHIN 190 Query: 184 NTMGQSTAASIDQAWKEVDVPLKIAEYIPYDEKARDLSVEVAKAKASGADALVSVTRVND 243 ++ G + I+ ++D+P I E I YD KARDLS+EV+KAKA+ AD +++VTR+ND Sbjct: 191 DSFGMAMLGGINALMPKLDMPFTIVETIAYDPKARDLSIEVSKAKAAKADFIMTVTRLND 250 Query: 244 AIMITRECIKQGWNPKLIFSPNSNGVQDKAYYNALGKYGDGAILSTVWYNPKAPDTATII 303 AI++ RE +KQ I SP + G+ DK ++ ALGKY + + W++PK ++ Sbjct: 251 AILLVREMVKQQVETMGIISPGAPGMYDKQFFKALGKYAEYCTTNVPWFDPKQEMAKSLE 310 Query: 304 KSFEASYPNEWLDANSGCAFEAVQIVADAVIRANSSVSSEIHAALRKTDLNPVLMYSGKI 363 K+FE ++P E D N G FEAV I ADA RA S+ + ALR T+L+ +M G I Sbjct: 311 KTFEKAFPEESCDLNVGFTFEAVLIAADAHKRAGSNDPQALTEALRTTNLSQRVMLGGAI 370 Query: 364 KFDENGQNINSAVTMLQGQGGMPKVISPRAIADASLQYPLKPFEVR 409 KF+ NGQN+N +Q GG P V P A A+A +P+ PF+ R Sbjct: 371 KFEANGQNMNLISAAVQNLGGKPTVTLPAASAEAKPIFPMPPFKGR 416 >ref|YP_003450458.1| branched-chain amino acid transport system substrate-binding protein [Azospirillum sp. B510] dbj|BAI73914.1| branched-chain amino acid transport system substrate-binding protein [Azospirillum sp. B510] Length = 420 Score = 300 bits (769), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 164/402 (40%), Positives = 241/402 (59%), Gaps = 6/402 (1%) Query: 6 GKDLTRRTVLGSGM--GLAAGLMPWHASAASRTVKVGSIMPSSGVLAFPGQACVRGINLG 63 G L+RRT+ + + G+ AG A A T+KVG ++P SG+LA GQAC RG ++ Sbjct: 12 GLALSRRTLGQAAIAGGVLAGFGRAPAFAQDTTLKVGVLLPRSGLLAQAGQACQRGADIA 71 Query: 64 AKFAKERFGVEMEIVHADTQSKPENGRIAADNLIRQGCTVLIGAWDSGATISALQAAEAA 123 + G ++E++ ADT+S + R + LI G V++GA+DSG T +A Q E Sbjct: 72 PAVLSD-LGYKVEVLSADTESNADVARSRTEKLINDGAHVIVGAFDSGQTAAAAQVCEQR 130 Query: 124 KVPMVVHIASATQVTSQGFTQVFRFYPTSLTIVRQSLLELKAILSSVENPPKSAAVLHLN 183 VP+V++IA+A ++T QG+ VFR +PTS +V + +K + ++ PK+A LH N Sbjct: 131 GVPLVMNIAAADKLTEQGYKTVFRNFPTSTMLVSNGMSLMKELFAATGATPKTAVFLHAN 190 Query: 184 NTMGQSTAASIDQAWKEVDVPLKIAEYIPYDEKARDLSVEVAKAKASGADALVSVTRVND 243 +T G + A+ID + ++D+P +I E I YD KA+DL+VEVAKAK +GA+ + TR ND Sbjct: 191 DTFGMANKAAIDALFPKLDMPFQIVESISYDPKAQDLAVEVAKAKGTGAELAIVTTRAND 250 Query: 244 AIMITRECIKQGWNPKLIFSPNSNGVQDKAYYNALGKYGDGAILSTVWYNPKAPDTATII 303 AIM+ RE +KQ W PK I SP S G+ D+ +Y LGKY D AI + WY+PKA T + Sbjct: 251 AIMLVREMVKQRWEPKGIVSPGSPGLYDEQFYKVLGKYADYAITNLPWYDPKAAMTKRVE 310 Query: 304 KSFEASYPNEWLDA---NSGCAFEAVQIVADAVIRANSSVSSEIHAALRKTDLNPVLMYS 360 +F +PN+ + N FEA+ I ADA RA ++ +S + AALR+T+L+ LM Sbjct: 311 AAFRKQFPNDRFEGYAFNVAFTFEAILIAADAFKRAGTAEASAMLAALRQTNLSDKLMVG 370 Query: 361 GKIKFDENGQNINSAVTMLQGQGGMPKVISPRAIADASLQYP 402 I FD+ GQN N +Q P V+ P+A A+A +P Sbjct: 371 PAITFDDKGQNTNLISACIQNHKLRPTVVLPKASAEADPVFP 412 >ref|YP_421393.1| ABC-type branched-chain amino acid transport systems [Magnetospirillum magneticum AMB-1] dbj|BAE50834.1| ABC-type branched-chain amino acid transport systems [Magnetospirillum magneticum AMB-1] Length = 417 Score = 292 bits (747), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 164/406 (40%), Positives = 245/406 (60%), Gaps = 4/406 (0%) Query: 7 KDLTRR---TVLGSGMGLAAGLMPWHASAASRTVKVGSIMPSSGVLAFPGQACVRGINLG 63 + +TRR T +G + +P ++ A+ +K+G ++P SG LA GQAC RG +G Sbjct: 12 RTITRRQFTTAAAAGALVTTTGLPLRSARAATPLKLGVLLPRSGHLALIGQACQRGAEIG 71 Query: 64 AKFAKERFGVEMEIVHADTQSKPENGRIAADNLIRQGCTVLIGAWDSGATISALQAAEAA 123 ++ G +E+++ADT+S P+ GR A+ LIR+G +L+G +DS T++ AE Sbjct: 72 LPMLRD-MGYSVELMNADTESNPDVGRTQAEKLIREGANMLMGCFDSATTLAVAGVAEQK 130 Query: 124 KVPMVVHIASATQVTSQGFTQVFRFYPTSLTIVRQSLLELKAILSSVENPPKSAAVLHLN 183 VP VV+IAS ++T QGF VFR +P++ + + LL K I ++ PK+A +LH+N Sbjct: 131 GVPFVVNIASEPKLTEQGFKYVFRNFPSAGMLGKGGLLLYKDIFAATGVTPKTAVLLHIN 190 Query: 184 NTMGQSTAASIDQAWKEVDVPLKIAEYIPYDEKARDLSVEVAKAKASGADALVSVTRVND 243 ++ G + I+ ++D+P +I E I YD KARDLS+EVAKAKA+ AD +++VTR+ND Sbjct: 191 DSFGMAMLGGINALMPKLDMPFQIVETIAYDPKARDLSIEVAKAKAAKADFVMTVTRLND 250 Query: 244 AIMITRECIKQGWNPKLIFSPNSNGVQDKAYYNALGKYGDGAILSTVWYNPKAPDTATII 303 AI++ RE +KQ I SP + G+ DK ++ ALGKY + + W++PK T+ Sbjct: 251 AILLVREMVKQQVETMGIISPGAPGMYDKQFFKALGKYAEYCTTNVPWFDPKQEMAKTLE 310 Query: 304 KSFEASYPNEWLDANSGCAFEAVQIVADAVIRANSSVSSEIHAALRKTDLNPVLMYSGKI 363 K+FE ++P E D N G FEAV I ADA RA S+ + ALR T+L+ M G I Sbjct: 311 KTFEKAFPEESCDLNVGFTFEAVLIAADAHKRAGSNDPQALTEALRATNLSKRAMLGGAI 370 Query: 364 KFDENGQNINSAVTMLQGQGGMPKVISPRAIADASLQYPLKPFEVR 409 KF+ NGQN+N +Q GG P V P A A+A +P+ PF+ R Sbjct: 371 KFEANGQNMNLISAAVQNLGGKPTVTLPAASAEAKPVFPMPPFKGR 416 >ref|ZP_00053652.1| COG0683: ABC-type branched-chain amino acid transport systems, periplasmic component [Magnetospirillum magnetotacticum MS-1] Length = 406 Score = 252 bits (644), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 139/370 (37%), Positives = 216/370 (58%), Gaps = 1/370 (0%) Query: 33 ASRTVKVGSIMPSSGVLAFPGQACVRGINLGAKFAKERFGVEMEIVHADTQSKPENGRIA 92 A++ +K+G ++P SG LA GQ+C RG ++ + G+ ++++ ADT++ + R Sbjct: 30 AAQPLKIGLLLPLSGGLAREGQSCKRGADVTPGLLAD-MGMPVQLMIADTETNIDTARTR 88 Query: 93 ADNLIRQGCTVLIGAWDSGATISALQAAEAAKVPMVVHIASATQVTSQGFTQVFRFYPTS 152 A+ LI G VLIGA+DS T++ Q E +P+VV+IA+A +T QGF +FR +PT+ Sbjct: 89 AEKLIADGAEVLIGAFDSAHTLAVAQVCEQRGIPLVVNIAAAPNITEQGFKTLFRNFPTA 148 Query: 153 LTIVRQSLLELKAILSSVENPPKSAAVLHLNNTMGQSTAASIDQAWKEVDVPLKIAEYIP 212 +V + L +K + P A LH N+T G + A ++++ + +D+P + E I Sbjct: 149 PKLVTEGLALMKDVFKISGTTPTKAVFLHNNDTFGTAMAGAVNKLFPTLDMPFPLVETIA 208 Query: 213 YDEKARDLSVEVAKAKASGADALVSVTRVNDAIMITRECIKQGWNPKLIFSPNSNGVQDK 272 YD ARDL+VEV KAKA+GAD ++ V +D I + RE +KQ + PK + SP S G+ + Sbjct: 209 YDGAARDLAVEVGKAKATGADLVLLVPHGDDCIRMIREMVKQRFEPKAVVSPGSPGMYEV 268 Query: 273 AYYNALGKYGDGAILSTVWYNPKAPDTATIIKSFEASYPNEWLDANSGCAFEAVQIVADA 332 +Y LGKY D + + W NPK+ + ++K+F +YP+ + N G FEA+ I ADA Sbjct: 269 QFYKTLGKYADYCMTNLPWINPKSAMSQALLKAFNKAYPDALFEMNIGFTFEAILIAADA 328 Query: 333 VIRANSSVSSEIHAALRKTDLNPVLMYSGKIKFDENGQNINSAVTMLQGQGGMPKVISPR 392 RA S+ I AAL T++ +M G I FD GQN N+ +Q GG P V+ P Sbjct: 329 AKRAGSNDPKAILAALPATNITEHVMIGGPIAFDAKGQNTNTRSATIQNFGGKPLVVLPS 388 Query: 393 AIADASLQYP 402 +A+A +P Sbjct: 389 DVAEAKPVFP 398 >ref|YP_421824.1| ABC-type branched-chain amino acid transport systems, periplasmic component [Magnetospirillum magneticum AMB-1] dbj|BAE51265.1| ABC-type branched-chain amino acid transport systems, periplasmic component [Magnetospirillum magneticum AMB-1] Length = 429 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 141/370 (38%), Positives = 214/370 (57%), Gaps = 1/370 (0%) Query: 33 ASRTVKVGSIMPSSGVLAFPGQACVRGINLGAKFAKERFGVEMEIVHADTQSKPENGRIA 92 A++ +KVG ++P SG LA GQ+C RG + + G+ ++++ ADT++ + R Sbjct: 53 AAQPLKVGLLLPLSGGLAREGQSCKRGAEVTPGLLAD-MGMPVQLMIADTETNIDTARTR 111 Query: 93 ADNLIRQGCTVLIGAWDSGATISALQAAEAAKVPMVVHIASATQVTSQGFTQVFRFYPTS 152 A+ LI G VLIGA+DS T++ Q E VP+VV+IA+A +T QGF +FR +PT+ Sbjct: 112 AEKLIADGAQVLIGAFDSAHTLAVAQVCEQRGVPLVVNIAAAPNITEQGFKTLFRNFPTA 171 Query: 153 LTIVRQSLLELKAILSSVENPPKSAAVLHLNNTMGQSTAASIDQAWKEVDVPLKIAEYIP 212 +V + L +K + P A LH N+T G + A ++++ + +D+P + E I Sbjct: 172 PKLVTEGLALMKDVFKVTGTTPTKAVFLHNNDTFGTAMAGAVNKLFPTLDMPFPLVETIS 231 Query: 213 YDEKARDLSVEVAKAKASGADALVSVTRVNDAIMITRECIKQGWNPKLIFSPNSNGVQDK 272 YD ARDL+VEV KAKA+GAD ++ V +D I RE +KQ + PK + SP S G+ + Sbjct: 232 YDGNARDLAVEVGKAKATGADLVLLVPHGDDCIRAIREMVKQRFEPKAVVSPGSPGMYET 291 Query: 273 AYYNALGKYGDGAILSTVWYNPKAPDTATIIKSFEASYPNEWLDANSGCAFEAVQIVADA 332 +Y LGKY D + + W NPK+ + ++K+F S+P+ + N G FEA+ I ADA Sbjct: 292 QFYKTLGKYSDYCMTNLPWINPKSAMSQALLKAFSKSHPDALFEMNIGFTFEAILIAADA 351 Query: 333 VIRANSSVSSEIHAALRKTDLNPVLMYSGKIKFDENGQNINSAVTMLQGQGGMPKVISPR 392 RA S+ I AAL T++ +M G I FD GQN N+ +Q GG P V+ P Sbjct: 352 AKRAGSNDPKAILAALPTTNIAEHVMIGGPIAFDAKGQNTNTRSATIQNFGGKPLVVLPS 411 Query: 393 AIADASLQYP 402 +A+A +P Sbjct: 412 DVAEAKPVFP 421