BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0066.0085.p (270 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003450606.1| branched-chain amino acid transport system p... 217 2e-54 ref|ZP_00053653.2| COG0559: Branched-chain amino acid ABC-type t... 213 2e-53 ref|YP_421823.1| branched chain amino acid ABC transporter perme... 204 1e-50 ref|ZP_00053198.2| COG0559: Branched-chain amino acid ABC-type t... 181 1e-43 ref|YP_001416609.1| inner-membrane translocator [Xanthobacter au... 175 8e-42 >ref|YP_003450606.1| branched-chain amino acid transport system permease protein [Azospirillum sp. B510] dbj|BAI74062.1| branched-chain amino acid transport system permease protein [Azospirillum sp. B510] Length = 289 Score = 217 bits (552), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 133/272 (48%), Positives = 186/272 (68%), Gaps = 3/272 (1%) Query: 1 LVYGLIALGLTIIFGVIRVVNFAHGAMVVFGLYIGYCTGLWWGMPTILAALLAGILMFAV 60 LVYGL ALGL++IFGV+RVVNFAHG M+V G+Y G W G+ +L+A + L+FA Sbjct: 18 LVYGLAALGLSVIFGVVRVVNFAHGEMMVAGMYGAVLLGGWIGLDPLLSAPIMAALLFAC 77 Query: 61 GYCLESVVVTRFVTRPHHVQFILFIGISLLFTGIQLLWFGPDPRPSVSQLSFETISLGGI 120 G+ L+ +V +FV RP H+QFIL +G++ + L+ FGPD R SF+T+ +G + Sbjct: 78 GWLLQRGLVNKFVERPEHMQFILLLGVATVLVNAMLMLFGPDARNVQVPYSFDTVEIGPM 137 Query: 121 RIDLARLQAACATTVLILALAAFLKYSLFG---RYXADNRLGGLIVGIPIPKIYAITFGI 177 +D RL+A A V+ AL AF ++S G R ADN LG +VG+ I +YA+TFGI Sbjct: 138 LLDAVRLRAGAAAIVVAAALFAFFRFSRTGKAIRACADNPLGARVVGLNIDGLYALTFGI 197 Query: 178 GTACAGFAGALISPLFDAQPYLAVDFTLLAFVTVIVGGLGSFVGALIGGLTIGVTEAVAA 237 G A G AGAL++ L DA+P LA ++TLL+F+ VIVGGLGS GAL+GG+ IG++EA+A Sbjct: 198 GAAVVGVAGALMTLLVDARPQLAPEYTLLSFIIVIVGGLGSLPGALLGGVLIGMSEALAG 257 Query: 238 LIVAPSMKTALSYALLIVVLILRPRGFFGAKE 269 ++ PS+K+ SY +LIVVL+LRP+G G + Sbjct: 258 FLLTPSLKSLFSYGVLIVVLLLRPQGLLGKRS 289 >ref|ZP_00053653.2| COG0559: Branched-chain amino acid ABC-type transport system, permease components [Magnetospirillum magnetotacticum MS-1] Length = 288 Score = 213 bits (543), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 116/272 (42%), Positives = 176/272 (64%), Gaps = 3/272 (1%) Query: 1 LVYGLIALGLTIIFGVIRVVNFAHGAMVVFGLYIGYCTGLWWGMPTILAALLAGILMFAV 60 LVY L+ALGL++IFGV+RVVNFAHG M +Y + W + ++ L +L+FA+ Sbjct: 17 LVYSLMALGLSVIFGVVRVVNFAHGEMTALAMYAAWALFSWLELDPLIGLPLIALLLFAL 76 Query: 61 GYCLESVVVTRFVTRPHHVQFILFIGISLLFTGIQLLWFGPDPRPSVSQLSFETISLGGI 120 GY ++ ++ FV++P H+QFIL + ++++ LL FGPD F+T +G + Sbjct: 77 GYVMQRGLIDAFVSKPEHMQFILLVAVAIVMVNGSLLVFGPDAHGIQVPYGFDTYEVGPL 136 Query: 121 RIDLARLQAACATTVLILALAAFLKYSLFG---RYXADNRLGGLIVGIPIPKIYAITFGI 177 +D RL AA A + L F ++++ G R ADN +G ++G+ + ++YA+TFGI Sbjct: 137 LVDKVRLLAAVAALAISGLLMLFFRHTMTGKAIRACADNLVGAKVIGLNVKQLYAVTFGI 196 Query: 178 GTACAGFAGALISPLFDAQPYLAVDFTLLAFVTVIVGGLGSFVGALIGGLTIGVTEAVAA 237 G+AC G AGAL++ L D P + T+LAF+ VIVGGLGS GAL+GG+ IG++E +A Sbjct: 197 GSACVGAAGALLAMLIDVMPSSGPELTMLAFIIVIVGGLGSMGGALLGGILIGISEVLAG 256 Query: 238 LIVAPSMKTALSYALLIVVLILRPRGFFGAKE 269 + PSMK+ S+A+LI+VLILRP+G GA++ Sbjct: 257 YFLMPSMKSMFSFAILILVLILRPQGLMGARK 288 >ref|YP_421823.1| branched chain amino acid ABC transporter permease [Magnetospirillum magneticum AMB-1] dbj|BAE51264.1| Branched-chain amino acid ABC-type transport system, permease components [Magnetospirillum magneticum AMB-1] Length = 290 Score = 204 bits (518), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 116/272 (42%), Positives = 175/272 (64%), Gaps = 3/272 (1%) Query: 1 LVYGLIALGLTIIFGVIRVVNFAHGAMVVFGLYIGYCTGLWWGMPTILAALLAGILMFAV 60 LVY L+ALGL++IFGV+RVVNFAHG M +Y + W + ++ L +L+FA+ Sbjct: 19 LVYSLMALGLSVIFGVVRVVNFAHGEMTALAMYAAWALFNWLELDPLVGLPLIALLLFAL 78 Query: 61 GYCLESVVVTRFVTRPHHVQFILFIGISLLFTGIQLLWFGPDPRPSVSQLSFETISLGGI 120 GY ++ ++ FV++P H+QFIL + ++++ LL FGPD F+T +G + Sbjct: 79 GYLMQRGLIDAFVSKPEHMQFILLVAVAIIMVNGSLLVFGPDAHGIQVPYGFDTYEVGPL 138 Query: 121 RIDLARLQAACATTVLILALAAFLKYSLFG---RYXADNRLGGLIVGIPIPKIYAITFGI 177 ID RL AA A + L F ++++ G R ADN +G ++G+ + ++YA+TFGI Sbjct: 139 LIDKVRLLAAVAALGISGLLMLFFRHTMTGKAIRACADNLVGARVIGLNVKQLYAVTFGI 198 Query: 178 GTACAGFAGALISPLFDAQPYLAVDFTLLAFVTVIVGGLGSFVGALIGGLTIGVTEAVAA 237 G+AC G AGAL++ L D P + T+LAF+ VIVGGLGS GAL+GG+ IGV+E +A Sbjct: 199 GSACVGAAGALLALLIDVMPSSGPELTMLAFIIVIVGGLGSMGGALLGGILIGVSEVLAG 258 Query: 238 LIVAPSMKTALSYALLIVVLILRPRGFFGAKE 269 + PSMK S+A+LI++L+LRP+G GA++ Sbjct: 259 YFLMPSMKAMFSFAILILILVLRPQGLMGARK 290 >ref|ZP_00053198.2| COG0559: Branched-chain amino acid ABC-type transport system, permease components [Magnetospirillum magnetotacticum MS-1] Length = 289 Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 125/271 (46%), Positives = 180/271 (66%), Gaps = 3/271 (1%) Query: 1 LVYGLIALGLTIIFGVIRVVNFAHGAMVVFGLYIGYCTGLWWGMPTILAALLAGILMFAV 60 LVYGL+ALGL++IFGV+RVVNFAHG M+V +Y + G+ + A L L+F V Sbjct: 18 LVYGLMALGLSVIFGVMRVVNFAHGDMMVVAMYAAFLLYTKMGIEPVPALPLVAGLLFVV 77 Query: 61 GYCLESVVVTRFVTRPHHVQFILFIGISLLFTGIQLLWFGPDPRPSVSQLSFETISLGGI 120 GY L+ ++ F+ H+QF+L + ++++ T I L+ FGPD R SFE+ SLG + Sbjct: 78 GYLLQRFLINHFLGVTEHIQFLLLLSVAMIITNIVLMVFGPDARNIQLDASFESYSLGPL 137 Query: 121 RIDLARLQAACATTVLILALAAFLKYSLFG---RYXADNRLGGLIVGIPIPKIYAITFGI 177 +D R+ AA + L AF KY+ G R ADN +G +VG+ + K+YAITFGI Sbjct: 138 VLDKVRVTAAFTAGGVAALLWAFFKYTTTGTAIRACADNPVGARVVGLNVEKLYAITFGI 197 Query: 178 GTACAGFAGALISPLFDAQPYLAVDFTLLAFVTVIVGGLGSFVGALIGGLTIGVTEAVAA 237 GTAC G AG L+ L D P+L+ D+TLL F+ VI+GGLGS GAL+GG+ +G++EA++ Sbjct: 198 GTACVGAAGCLLLLLVDVHPHLSSDYTLLGFIIVILGGLGSLGGALLGGILVGLSEALSG 257 Query: 238 LIVAPSMKTALSYALLIVVLILRPRGFFGAK 268 +++APS+K+ S+ LLI+VL+LRP+G G K Sbjct: 258 VLIAPSLKSMFSFGLLILVLLLRPQGILGKK 288 >ref|YP_001416609.1| inner-membrane translocator [Xanthobacter autotrophicus Py2] gb|ABS66952.1| inner-membrane translocator [Xanthobacter autotrophicus Py2] Length = 294 Score = 175 bits (443), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 112/276 (40%), Positives = 168/276 (60%), Gaps = 13/276 (4%) Query: 2 VYGLIALGLTIIFGVIRVVNFAHGAMVVFGLYIGYCTGLWWGMPTILAALLAGILMFAVG 61 +YG IALGL++IFGV+RVVNFAHG+ ++ LY+ + GM L+AL+ MFA+G Sbjct: 19 IYGGIALGLSLIFGVLRVVNFAHGSFLMLSLYLSFWCWSLLGMDPYLSALVTVPAMFALG 78 Query: 62 YCLESVVVTRFVTRPHHV------QFILFIGISLLFTGIQLLWFGPDPRPSVSQLSF--E 113 Y ++ V+++ + R + +L GI L+ + L+ FGPD R SV QLS+ Sbjct: 79 YLVQRVIISPLIVRERALVVEPLSALLLTCGIFLVVDNLALMAFGPDVR-SV-QLSYYMP 136 Query: 114 TISLGGIRIDLARLQAACATTVLILALAAFLKYSLFGRY---XADNRLGGLIVGIPIPKI 170 ++ LG I +D RL AA ++ + +A++ +L+YS GR A NR + GI +P++ Sbjct: 137 SVMLGPIPVDTPRLIAAASSIGVAVAVSMWLRYSHLGRAIRATAQNRDAAAMSGIDVPQV 196 Query: 171 YAITFGIGTACAGFAGALISPLFDAQPYLAVDFTLLAFVTVIVGGLGSFVGALIGGLTIG 230 YA+TFG+G A G GALI+P P + V F + +F+ V++GG+GS G++IGGL IG Sbjct: 197 YAVTFGLGCAILGLFGALIAPFIPVNPQIGVAFGIKSFIVVVLGGMGSLPGSIIGGLVIG 256 Query: 231 VTEAVAALIVAPSMKTALSYALLIVVLILRPRGFFG 266 V EAVA+ V + S L I+VL++RP G G Sbjct: 257 VFEAVASQFVTATSAAIFSLGLFILVLLVRPAGIMG 292