BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0066.0079.p (363 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_486707.1| hypothetical protein RPB_3098 [Rhodopseudomonas... 350 1e-94 ref|YP_003319754.1| NMT1/THI5 like domain-containing protein [Sp... 240 3e-61 ref|NP_879599.1| hypothetical protein BP0782 [Bordetella pertuss... 179 7e-43 ref|NP_886896.1| hypothetical protein BB0347 [Bordetella bronchi... 179 8e-43 ref|NP_882699.1| hypothetical protein BPP0344 [Bordetella parape... 179 9e-43 >ref|YP_486707.1| hypothetical protein RPB_3098 [Rhodopseudomonas palustris HaA2] gb|ABD07796.1| putative exported protein [Rhodopseudomonas palustris HaA2] Length = 364 Score = 350 bits (899), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 172/338 (50%), Positives = 237/338 (70%), Gaps = 3/338 (0%) Query: 25 AADKVQALIGVRNMDEAQAPFIVAKYLGYFSREGLDVDLLTVGGSNEIAIQVASGNANLG 84 A +KV+ LI VRN+DEA +PF+VAK GYF+ EGLDV L+ VGGSNE AIQV++GN ++G Sbjct: 29 ALEKVRVLIPVRNIDEAFSPFVVAKEKGYFAEEGLDVTLIAVGGSNESAIQVSAGNGDVG 88 Query: 85 AASPSQAVIGMQENSAAPLDVRYFYDYSYRNIWSMSVPADSSIRSIADLRGKKIGIPSLG 144 AASP +A++G+Q A LDVRYFY Y+NIW ++V DS I++IADL+GKK+G+ SLG Sbjct: 89 AASPGEALVGIQ---AGKLDVRYFYSLYYQNIWHVAVLPDSPIKAIADLKGKKLGVQSLG 145 Query: 145 SGGVTYGKAYVRSAGLDPDKDVTFIPIGVGSQAVSAVRQKIVDAIAFWDVANVRFGLSGL 204 S G T+GKA+V+ AGLDP DV F+P+GVG+QAV++VRQK VDA+ +WD A +F SGL Sbjct: 146 SAGTTFGKAFVQQAGLDPQTDVAFLPVGVGAQAVTSVRQKFVDAVVYWDAALAKFKFSGL 205 Query: 205 PLRNLDIGENLDALPDLSLLAKNDVIKNNPQMLIGFARAVSKAIDFTNANPVAAVMITWK 264 LR + E + +LPD+ LLA +D I P+MLIG +R V+K D++ ANP AAV+ITWK Sbjct: 206 DLREVPAPEGIRSLPDVGLLATSDTIAKKPKMLIGVSRGVAKGYDYSMANPRAAVLITWK 265 Query: 265 VYPESRPGELDAQQALAQGLKILEVRSPGWRSAKTNGKNGLFVEEDWKKLSSFLLAGGQI 324 YPE++ D AL +G+ + + R W S KT ++G +E DW++L F +A + Sbjct: 266 AYPEAKSKNPDPAAALEEGITVNQARLRIWNSPKTEDQHGRLIEADWQRLVDFFVAQKVL 325 Query: 325 TRPVPTSRMYTNDLIDEINNYDRDAVIRQAKEFDLGSV 362 VP R+ TN + + N+YDR AVI AK+ D+ + Sbjct: 326 PGAVPVDRVITNQFVKDANSYDRQAVIADAKKTDVSKL 363 >ref|YP_003319754.1| NMT1/THI5 like domain-containing protein [Sphaerobacter thermophilus DSM 20745] gb|ACZ38932.1| NMT1/THI5 like domain protein [Sphaerobacter thermophilus DSM 20745] Length = 365 Score = 240 bits (612), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 137/356 (38%), Positives = 207/356 (58%), Gaps = 9/356 (2%) Query: 7 FLFAWMVSFGGHCGQPV-----LAADKVQALIGVRNMDEAQAPFIVAKYLGYFSREGLDV 61 FL + + F CG +VQ L+ + + + AP++VA+ +GYF EG++ Sbjct: 12 FLLSLALVFAVACGGAAGSEGGTEKRRVQILLAAQAWNVSFAPWVVAEEMGYFEEEGIEP 71 Query: 62 DLLTVGGSNEIAIQVASGNANLGAASPSQAVIGMQENSAAPLDVRYFYDYSYRNIWSMSV 121 D + V GS ++ QVASG+ +GA SP +IG Q + + +RYFY RNI+S++V Sbjct: 72 DWVMVAGSTDVTKQVASGSGMIGAPSPEPVIIGHQASQG--MQIRYFYTLYRRNIYSIAV 129 Query: 122 PADSSIRSIADLRGKKIGIPSLGSGGVTYGKAYVRSAGLDPDKDVTFIPIGVGSQAVSAV 181 PADS I++ ADL+GK++G+ S+GS GV KA ++ AGLDP+ D T + IG QA +AV Sbjct: 130 PADSPIQTAADLKGKRVGVTSMGSAGVINIKAVLKEAGLDPE-DATVVAIGESGQAAAAV 188 Query: 182 RQKIVDAIAFWDVANVRFGLSGLPLRNLDIGENLDALPDLSLLAKNDVIKNNPQMLIGFA 241 ++ VDA++ WD G+ LR LD +L LP SLLA+++ ++ +P + A Sbjct: 189 QKGEVDALSLWDAQYAILENQGIALRYLDT-PSLTKLPSNSLLARDEDLEKDPDLFARVA 247 Query: 242 RAVSKAIDFTNANPVAAVMITWKVYPESRPGELDAQQALAQGLKILEVRSPGWRSAKTNG 301 RAV+K FT NP AAV I WK +P+++P + ++A AQ ILE RS + Sbjct: 248 RAVAKGTIFTLENPDAAVRIVWKRHPDTKPAGMPEEEAFAQAKHILEARSERLWLEEGVT 307 Query: 302 KNGLFVEEDWKKLSSFLLAGGQITRPVPTSRMYTNDLIDEINNYDRDAVIRQAKEF 357 + G E + F+ G IT PV + +YTN+L+D IN++D DAV QA+ + Sbjct: 308 QWGYSDPEVYHAFVDFMAEQGLITEPVNSEDLYTNELLDTINDFDADAVREQARNW 363 >ref|NP_879599.1| hypothetical protein BP0782 [Bordetella pertussis Tohama I] emb|CAE41088.1| putative exported protein [Bordetella pertussis Tohama I] gb|AEE66219.1| hypothetical protein BPTD_0783 [Bordetella pertussis CS] Length = 365 Score = 179 bits (454), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 106/332 (31%), Positives = 174/332 (52%), Gaps = 3/332 (0%) Query: 27 DKVQALIGVRNMDEAQAPFIVAKYLGYFSREGLDVDLLTVGGSNEIAIQVASGNANLGAA 86 +KV G+ N+ + AP ++A +GYF GLDV G+ + QV + G Sbjct: 35 EKVTFAYGI-NISLSNAPTLMAIGMGYFKEAGLDVQATFFQGAAVMLPQVTQKHITFGWI 93 Query: 87 SPSQAVIGMQENSAAPLDVRYFYDYSYRNIWSMSVPADSSIRSIADLRGKKIGIPSLGSG 146 +P VI Q A L V+ FY+ Y + + + V S RS+ADL+GKKIG+ ++ G Sbjct: 94 TPDPLVISRQPGRDA-LPVKMFYNGIYLSPFEVVVTKSSPARSLADLKGKKIGVGAMSWG 152 Query: 147 GVTYGKAYVRSAGLDPDKDVTFIPIGVGSQAVSAVRQKIVDAIAFWDVANVRFGLSGLPL 206 + KA ++ GL+ +D F+P+GVG+ A A+ V A+ +D +V+ G L Sbjct: 153 NLAVTKAMMKKLGLELQRDYEFVPVGVGATAFRALADDKVQALNLFDTFHVQMEQMGADL 212 Query: 207 RNLDIGENLDALPDLSLLAKNDVIKNNPQMLIGFARAVSKAIDFTNANPVAAVMITWKVY 266 R L + ++ L +A D ++ P++++ FARA +K + NANP A V WK+Y Sbjct: 213 RRLPMDQSYRELFSSGWIAHQDTLRERPELVVAFARAAAKGVVACNANPQACVQNFWKLY 272 Query: 267 PESRPGELDAQQALAQGLKILEVRSPGWRSAKTNGKNGLFVEEDWKKLSSFLLAGGQI-T 325 P ++P + ++ LA ++IL+VR + + G + E+ W L GGQ+ T Sbjct: 273 PATKPADGTEEKKLADAVQILKVRLATMLPEQGPQQMGYYTEQSWHDYVDVLHEGGQLST 332 Query: 326 RPVPTSRMYTNDLIDEINNYDRDAVIRQAKEF 357 + V +YTN + +IN++D AV+ AK+ Sbjct: 333 KDVDVKPLYTNQFVKDINDFDAAAVVSAAKQL 364 >ref|NP_886896.1| hypothetical protein BB0347 [Bordetella bronchiseptica RB50] emb|CAE30845.1| putative exported protein [Bordetella bronchiseptica RB50] Length = 365 Score = 179 bits (453), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 103/322 (31%), Positives = 170/322 (52%), Gaps = 2/322 (0%) Query: 37 NMDEAQAPFIVAKYLGYFSREGLDVDLLTVGGSNEIAIQVASGNANLGAASPSQAVIGMQ 96 N+ + AP ++A +GYF GLDV G+ + QV + G +P VI Q Sbjct: 44 NISLSNAPTLMAIGMGYFKEAGLDVQATFFQGAAVMLPQVTQKHITFGWITPDPLVISSQ 103 Query: 97 ENSAAPLDVRYFYDYSYRNIWSMSVPADSSIRSIADLRGKKIGIPSLGSGGVTYGKAYVR 156 A L V+ FY+ Y + + + V +S RS+ADL+GKKIG+ ++ G + KA ++ Sbjct: 104 PGRDA-LPVKMFYNGIYLSPFEVVVTKNSPARSLADLKGKKIGVGAMSWGNLAVTKAMMK 162 Query: 157 SAGLDPDKDVTFIPIGVGSQAVSAVRQKIVDAIAFWDVANVRFGLSGLPLRNLDIGENLD 216 GL+ +D F+P+GVG+ A A+ V A+ +D +V+ G LR L + ++ Sbjct: 163 KLGLELQRDYEFVPVGVGATAFRALADDKVQALNLFDTFHVQMEQMGADLRRLPMDQSYR 222 Query: 217 ALPDLSLLAKNDVIKNNPQMLIGFARAVSKAIDFTNANPVAAVMITWKVYPESRPGELDA 276 L +A D ++ P++++ FARA +K + NANP A V WK+YP ++P + Sbjct: 223 ELFSSGWIAHQDTLRERPELVVAFARAAAKGVVACNANPQACVQNFWKLYPATKPADGTE 282 Query: 277 QQALAQGLKILEVRSPGWRSAKTNGKNGLFVEEDWKKLSSFLLAGGQI-TRPVPTSRMYT 335 ++ LA ++IL+VR + + G + E+ W L GGQ+ T+ V +YT Sbjct: 283 EKKLADAVQILKVRLATMLPEQGPQQMGYYTEQSWHDYVDVLHEGGQLSTKDVDVKPLYT 342 Query: 336 NDLIDEINNYDRDAVIRQAKEF 357 N + +IN++D AV+ AK+ Sbjct: 343 NQFVKDINDFDAAAVVSAAKQL 364 >ref|NP_882699.1| hypothetical protein BPP0344 [Bordetella parapertussis 12822] emb|CAE35928.1| putative exported protein [Bordetella parapertussis] Length = 365 Score = 179 bits (453), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 103/322 (31%), Positives = 170/322 (52%), Gaps = 2/322 (0%) Query: 37 NMDEAQAPFIVAKYLGYFSREGLDVDLLTVGGSNEIAIQVASGNANLGAASPSQAVIGMQ 96 N+ + AP ++A +GYF GLDV G+ + QV + G +P VI Q Sbjct: 44 NISLSNAPTLMAIGMGYFKEAGLDVQATFFQGAAVMLPQVTQKHITFGWITPDPLVISSQ 103 Query: 97 ENSAAPLDVRYFYDYSYRNIWSMSVPADSSIRSIADLRGKKIGIPSLGSGGVTYGKAYVR 156 A L V+ FY+ Y + + + V +S RS+ADL+GKKIG+ ++ G + KA ++ Sbjct: 104 PGRDA-LPVKMFYNGIYLSPFEVVVTKNSPARSLADLKGKKIGVGAMSWGNLAVTKAMMK 162 Query: 157 SAGLDPDKDVTFIPIGVGSQAVSAVRQKIVDAIAFWDVANVRFGLSGLPLRNLDIGENLD 216 GL+ +D F+P+GVG+ A A+ V A+ +D +V+ G LR L + ++ Sbjct: 163 KLGLELQRDYEFVPVGVGATAFRALADDKVQALNLFDTFHVQMEQMGADLRRLPMDQSYR 222 Query: 217 ALPDLSLLAKNDVIKNNPQMLIGFARAVSKAIDFTNANPVAAVMITWKVYPESRPGELDA 276 L +A D ++ P++++ FARA +K + NANP A V WK+YP ++P + Sbjct: 223 ELFSSGWIAHQDTLRERPKLVVAFARAAAKGVVACNANPQACVQNFWKLYPATKPADGTE 282 Query: 277 QQALAQGLKILEVRSPGWRSAKTNGKNGLFVEEDWKKLSSFLLAGGQI-TRPVPTSRMYT 335 ++ LA ++IL+VR + + G + E+ W L GGQ+ T+ V +YT Sbjct: 283 EKKLADAVQILKVRLATMLPEQGPQQMGYYTEQSWHDYVDVLHEGGQLSTKDVDVKPLYT 342 Query: 336 NDLIDEINNYDRDAVIRQAKEF 357 N + +IN++D AV+ AK+ Sbjct: 343 NQFVKDINDFDAAAVVSAAKQL 364