BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0066.0078.p (467 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002979089.1| multi-sensor signal transduction multi-kinas... 559 e-157 ref|YP_001896048.1| PAS sensor protein [Burkholderia phytofirman... 542 e-152 ref|YP_003608105.1| multi-sensor signal transduction multi-kinas... 535 e-150 ref|YP_004687756.1| nodulation protein NodV [Cupriavidus necator... 526 e-147 ref|YP_001632544.1| serine/threonine kinase protein [Bordetella ... 522 e-146 >ref|YP_002979089.1| multi-sensor signal transduction multi-kinase [Rhizobium leguminosarum bv. trifolii WSM1325] gb|ACS60538.1| multi-sensor signal transduction multi-kinase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 1845 Score = 559 bits (1440), Expect = e-157, Method: Compositional matrix adjust. Identities = 274/415 (66%), Positives = 332/415 (80%), Gaps = 4/415 (0%) Query: 14 LQQAWEDGERIFYRGWHEGIDGR-RAVLVVVPTGNPPTAGSLKRLAHEFELKHELADACW 72 ++ WEDG+R+F+R W G DG+ VLVV+ PT SL L HE+ LK EL D W Sbjct: 1 MEVLWEDGDRVFHREWRRGTDGKLNPVLVVLSALEYPTPSSLGHLDHEYGLKDEL-DGAW 59 Query: 73 AARPLEMLRERGRTMLVLSDPGGEPLHHSIGAPMEVQSFLRIAISLSSAIGRLHDCGIVH 132 AARPLE++RE GRTMLVL D G EPL +G ME + FLR+AI +++A+G++H G+VH Sbjct: 60 AARPLELVREGGRTMLVLEDAGSEPLARLLGKAMETELFLRLAIGIAAALGKVHQRGLVH 119 Query: 133 KDVKPANXDIAAG--QAWLAGFGSATRLTRERRMLEPPETIAGTLAYMAPEQTGRMNRSI 190 KD+KPAN +A + L GFG A+RL+RER+ LEPPE +AGTLAYMAPEQTGRMNRSI Sbjct: 120 KDIKPANILVAGTGVEVRLTGFGIASRLSRERQALEPPEVVAGTLAYMAPEQTGRMNRSI 179 Query: 191 DSRSDLYALGVTLYQLITGVLPFTATDPLEWVHCHIARRPMPPAERVRGVPGAISAIIMK 250 DSRSDLYALGVTLY+++TG LPF+A+DP+EWVHCH+AR+P PP ERV V A+SAI+MK Sbjct: 180 DSRSDLYALGVTLYEMLTGSLPFSASDPMEWVHCHVARQPTPPNERVVNVSPAVSAIVMK 239 Query: 251 LLAKTAEERYQTAAGLESDLRRCLAAWKSERRIEDFPLGERDAPDRLLIPEKLYGREREI 310 LLAKTAEERYQTA G+E DL RCL+ W+ + + FPLGERD PDRLLIPEKLYGR+ E+ Sbjct: 240 LLAKTAEERYQTAGGVEHDLSRCLSQWEMQCPTDAFPLGERDIPDRLLIPEKLYGRDDEV 299 Query: 311 EALLGSFDRVVRSGAPELVLISGYSGVGKSAVVHELHKALVPNRGLFASGKFDQYRRDVP 370 E LL +F+RVV SGAPELVL+SGYSG+GKSAVV+ELHK LVP GLFASGKFDQY+RD+P Sbjct: 300 ETLLTAFERVVSSGAPELVLVSGYSGIGKSAVVNELHKVLVPPHGLFASGKFDQYKRDIP 359 Query: 371 YAALAEAFQSLIRQLLAKSDADLAPWRDALRAALDPLGQLIVDLVPELRMVIGDH 425 YA LA+AFQSLIR LLAKSDADLAPWR+ L L P G+L+VDLVPEL+++IGD Sbjct: 360 YATLAQAFQSLIRGLLAKSDADLAPWRETLIETLGPNGRLMVDLVPELKLIIGDQ 414 >ref|YP_001896048.1| PAS sensor protein [Burkholderia phytofirmans PsJN] gb|ACD16824.1| PAS sensor protein [Burkholderia phytofirmans PsJN] Length = 1837 Score = 542 bits (1397), Expect = e-152, Method: Compositional matrix adjust. Identities = 267/415 (64%), Positives = 325/415 (78%), Gaps = 3/415 (0%) Query: 12 GNLQQAWEDGERIFYRGWHEGIDGRRAVLVVVPTGNPPTAGSLKRLAHEFELKHELADAC 71 +LQ W DG+R R G G R VL+ P S+ +LAHEF LK EL D+ Sbjct: 5 NSLQIVWNDGQRAVSRERRAGEAGERDVLLARAAAEQPRPDSVDQLAHEFGLKDEL-DSA 63 Query: 72 WAARPLEMLRERGRTMLVLSDPGGEPLHHSIGAPMEVQSFLRIAISLSSAIGRLHDCGIV 131 WA RPLE++RE RT+LVL DPGG PL H +GAP+E++ LR+A+ +++A+GRLH G+V Sbjct: 64 WAVRPLELMREGSRTLLVLEDPGGGPLAHLLGAPLEIEDSLRLAVGIAAALGRLHQRGLV 123 Query: 132 HKDVKPAN--XDIAAGQAWLAGFGSATRLTRERRMLEPPETIAGTLAYMAPEQTGRMNRS 189 HKD+KP + + A G+ L GFG A+RL RER+ EPPETIAGTLAYMAPEQTGRMNRS Sbjct: 124 HKDLKPTHIMVNCADGRVRLTGFGLASRLPRERQAPEPPETIAGTLAYMAPEQTGRMNRS 183 Query: 190 IDSRSDLYALGVTLYQLITGVLPFTATDPLEWVHCHIARRPMPPAERVRGVPGAISAIIM 249 IDSRSDLYALGVTLYQ++TG LPF A DP EWVHCHIAR+P+ P+ R+ VP AIS I+M Sbjct: 184 IDSRSDLYALGVTLYQMLTGALPFMAADPTEWVHCHIARKPVAPSARLATVPAAISHIVM 243 Query: 250 KLLAKTAEERYQTAAGLESDLRRCLAAWKSERRIEDFPLGERDAPDRLLIPEKLYGRERE 309 KLLAKTAEERYQTAAG+E DLR CLA W+ +RRI+DFPLGE D+PDRLLIPEKLYGRE E Sbjct: 244 KLLAKTAEERYQTAAGVERDLRLCLADWRRQRRIDDFPLGEHDSPDRLLIPEKLYGREHE 303 Query: 310 IEALLGSFDRVVRSGAPELVLISGYSGVGKSAVVHELHKALVPNRGLFASGKFDQYRRDV 369 +E L+ +FDR+V SG PELVL++GYSG+GKS+VV+ELHK LV RGLFA+GKFDQY+RD+ Sbjct: 304 VEILVAAFDRIVGSGVPELVLVTGYSGIGKSSVVNELHKVLVQPRGLFAAGKFDQYKRDI 363 Query: 370 PYAALAEAFQSLIRQLLAKSDADLAPWRDALRAALDPLGQLIVDLVPELRMVIGD 424 PYA L +AFQSL+R LL K DADLA WRDAL AALD L+ DL+PEL+++IG+ Sbjct: 364 PYATLVQAFQSLVRPLLGKRDADLASWRDALLAALDVNAGLMTDLIPELKLIIGE 418 >ref|YP_003608105.1| multi-sensor signal transduction multi-kinase [Burkholderia sp. CCGE1002] gb|ADG18594.1| multi-sensor signal transduction multi-kinase [Burkholderia sp. CCGE1002] Length = 1832 Score = 535 bits (1378), Expect = e-150, Method: Compositional matrix adjust. Identities = 266/409 (65%), Positives = 318/409 (77%), Gaps = 4/409 (0%) Query: 18 WEDGERIFYRGWHEGIDGRRAVLVVVPTGNPPTAGSLKRLAHEFELKHELADACWAARPL 77 W+DGER+F R G+ +L + P A SL RLAHEF LK EL D+ WA RPL Sbjct: 9 WDDGERVFSREQSSAPAGQNVLLARLAREQPMPA-SLDRLAHEFALKDEL-DSAWAVRPL 66 Query: 78 EMLRERGRTMLVLSDPGGEPLHHSIGAPMEVQSFLRIAISLSSAIGRLHDCGIVHKDVKP 137 ++RE +T+L L DPGGEPL +GAPME+ FL +AI +++A+G+LH G+VHKD+KP Sbjct: 67 RLVREGSQTVLALEDPGGEPLARLLGAPMEIGYFLELAIGIAAALGKLHQRGLVHKDLKP 126 Query: 138 ANXDI--AAGQAWLAGFGSATRLTRERRMLEPPETIAGTLAYMAPEQTGRMNRSIDSRSD 195 A+ + A QA L GFG A+RL RER+ EPPETIAGTLAYMAPEQTGRMNRSIDSRSD Sbjct: 127 AHVLVHCADEQARLTGFGLASRLPRERQAPEPPETIAGTLAYMAPEQTGRMNRSIDSRSD 186 Query: 196 LYALGVTLYQLITGVLPFTATDPLEWVHCHIARRPMPPAERVRGVPGAISAIIMKLLAKT 255 LYALGVT YQ++TGVLPF ATD +EWVHCHIAR P+PP RV VP IS I+MKLLAKT Sbjct: 187 LYALGVTFYQMLTGVLPFAATDAMEWVHCHIARTPLPPNTRVEAVPAVISRIVMKLLAKT 246 Query: 256 AEERYQTAAGLESDLRRCLAAWKSERRIEDFPLGERDAPDRLLIPEKLYGREREIEALLG 315 AEERYQTAAG+E DLRRCLA W+ RRI+DF L E PDRL+IPEKLYGRERE+E L+ Sbjct: 247 AEERYQTAAGVEHDLRRCLADWQRRRRIDDFTLDEHGTPDRLMIPEKLYGREREVETLVA 306 Query: 316 SFDRVVRSGAPELVLISGYSGVGKSAVVHELHKALVPNRGLFASGKFDQYRRDVPYAALA 375 +FDR++ SG PELVL+SGYSG+GKS+VV+ELHK LVP+RGLFASGKFDQY+RD+PYA L Sbjct: 307 TFDRILDSGVPELVLVSGYSGIGKSSVVNELHKILVPSRGLFASGKFDQYKRDIPYATLI 366 Query: 376 EAFQSLIRQLLAKSDADLAPWRDALRAALDPLGQLIVDLVPELRMVIGD 424 +AFQSL+R LL KSD +LA WR AL AL P LI DL+PEL ++IG+ Sbjct: 367 QAFQSLVRMLLGKSDTELAGWRAALLDALAPNAALISDLIPELELIIGE 415 >ref|YP_004687756.1| nodulation protein NodV [Cupriavidus necator N-1] gb|AEI81718.1| nodulation protein NodV [Cupriavidus necator N-1] Length = 1861 Score = 526 bits (1356), Expect = e-147, Method: Compositional matrix adjust. Identities = 262/414 (63%), Positives = 322/414 (77%), Gaps = 4/414 (0%) Query: 13 NLQQAWEDGERIFYRGWHEGIDGRR-AVLVVVPTGNPPTAGSLKRLAHEFELKHELADAC 71 + Q W+DGER+ RGW DG+R AVL + P +L RLAHEF LK L D Sbjct: 40 SFQVLWKDGERVLGRGWRLAADGQREAVLALWLATEHPMPANLGRLAHEFSLKEAL-DPA 98 Query: 72 WAARPLEMLRERGRTMLVLSDPGGEPLHHSIGAPMEVQSFLRIAISLSSAIGRLHDCGIV 131 WAARPLE++RE GRT+L+L DPGGEPL +G PME FLR+AI++S A+G+ H G + Sbjct: 99 WAARPLELVREHGRTVLLLEDPGGEPLDRLMGTPMEAGRFLRLAIAMSGALGQFHQRGFI 158 Query: 132 HKDVKPAN--XDIAAGQAWLAGFGSATRLTRERRMLEPPETIAGTLAYMAPEQTGRMNRS 189 HKD+KPA+ + A G L GFG A+RL RE + P+ IAGTLAYMAPEQTGRMNRS Sbjct: 159 HKDLKPAHILVNQADGAVRLTGFGLASRLLRETQAPTQPDEIAGTLAYMAPEQTGRMNRS 218 Query: 190 IDSRSDLYALGVTLYQLITGVLPFTATDPLEWVHCHIARRPMPPAERVRGVPGAISAIIM 249 +D+RSDLYALGVTLYQ++TG LPF+A +P++WVHCH+AR+PM PAERV P +SA++M Sbjct: 219 VDARSDLYALGVTLYQMLTGTLPFSAGNPMDWVHCHLARQPMAPAERVPASPVQLSAVVM 278 Query: 250 KLLAKTAEERYQTAAGLESDLRRCLAAWKSERRIEDFPLGERDAPDRLLIPEKLYGRERE 309 KLLAKTAEERYQTA GLE+DLRRCLAAW+S RI+ F GE D PDRL+IPE+LYGR+RE Sbjct: 279 KLLAKTAEERYQTAGGLEADLRRCLAAWESRGRIDTFAPGEHDLPDRLMIPERLYGRDRE 338 Query: 310 IEALLGSFDRVVRSGAPELVLISGYSGVGKSAVVHELHKALVPNRGLFASGKFDQYRRDV 369 I LLG+FDRVV GAPELVL+SGYSG+GK++VVHELH+ALVP+RGLFASGKFDQY+RD+ Sbjct: 339 IGVLLGAFDRVVSGGAPELVLVSGYSGIGKTSVVHELHRALVPHRGLFASGKFDQYKRDI 398 Query: 370 PYAALAEAFQSLIRQLLAKSDADLAPWRDALRAALDPLGQLIVDLVPELRMVIG 423 PYA LA+A Q L+R LL KS+A+LAPWR AL AL P L+V L+PEL +++G Sbjct: 399 PYATLAQALQGLVRPLLGKSEAELAPWRAALAEALGPNIGLMVPLIPELALILG 452 >ref|YP_001632544.1| serine/threonine kinase protein [Bordetella petrii DSM 12804] emb|CAP44276.1| serine/threonine kinase with two-component sensor domain [Bordetella petrii] Length = 1832 Score = 522 bits (1345), Expect = e-146, Method: Compositional matrix adjust. Identities = 255/414 (61%), Positives = 321/414 (77%), Gaps = 4/414 (0%) Query: 13 NLQQAWEDGERIFYRGWHEGIDGRRAVLVVVPTGNPPTAGSLKRLAHEFELKHELADACW 72 N++ +W+DGERIF+RG + R+ VL P P +L RLAHEF+L++EL D+ W Sbjct: 4 NMKLSWDDGERIFWRGQFDA-PSRQNVLFARPAIEQPLPETLDRLAHEFDLRNEL-DSAW 61 Query: 73 AARPLEMLRERGRTMLVLSDPGGEPLHHSIGAPMEVQSFLRIAISLSSAIGRLHDCGIVH 132 AARPL + RE +T LVL DPGG PL H + P+E+ FL +A+ +++A+ +LH G++H Sbjct: 62 AARPLLLTRENNQTTLVLEDPGGGPLAHLLDGPLEISLFLELALGIATALDKLHQHGLIH 121 Query: 133 KDVKPANXDIAA--GQAWLAGFGSATRLTRERRMLEPPETIAGTLAYMAPEQTGRMNRSI 190 KD+KPA+ + G+A GFG A+RL RER+ PPETIAGTLAYMAPEQTGRMNRS+ Sbjct: 122 KDIKPAHILVHCTDGRARFTGFGLASRLPRERQAPTPPETIAGTLAYMAPEQTGRMNRSV 181 Query: 191 DSRSDLYALGVTLYQLITGVLPFTATDPLEWVHCHIARRPMPPAERVRGVPGAISAIIMK 250 DSRSDLYALGVT YQ++TGVLPF+A D +EWVHCHIAR PMP AERV VP AIS I+MK Sbjct: 182 DSRSDLYALGVTFYQMLTGVLPFSAMDAMEWVHCHIARTPMPAAERVATVPAAISRIVMK 241 Query: 251 LLAKTAEERYQTAAGLESDLRRCLAAWKSERRIEDFPLGERDAPDRLLIPEKLYGREREI 310 LLAKTAE+RYQTAAGLE DLRRCLA W RI++F L E APDRL+IPEKLYGRERE+ Sbjct: 242 LLAKTAEDRYQTAAGLEHDLRRCLADWNRLGRIDEFSLDELGAPDRLIIPEKLYGREREV 301 Query: 311 EALLGSFDRVVRSGAPELVLISGYSGVGKSAVVHELHKALVPNRGLFASGKFDQYRRDVP 370 +AL +F R+V SG PELVL++GYSG+GKS++V ELHK LVP RGLFASGKFDQ++R+VP Sbjct: 302 DALAAAFARIVGSGVPELVLVAGYSGIGKSSIVDELHKILVPRRGLFASGKFDQHKRNVP 361 Query: 371 YAALAEAFQSLIRQLLAKSDADLAPWRDALRAALDPLGQLIVDLVPELRMVIGD 424 YA L +AFQSL+R LL K DA+L WR+AL+ AL P L+ DL+P+L+++IG+ Sbjct: 362 YATLIQAFQSLVRALLGKPDAELESWREALQEALSPNAALMTDLIPDLKLIIGE 415