BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0066.0076.p (205 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004674957.1| transcriptional regulatory protein fixJ [Hyp... 243 9e-63 ref|YP_003695646.1| LuxR family transcriptional regulator [Stark... 238 5e-61 ref|YP_001525197.1| nodulation protein W [Azorhizobium caulinoda... 236 2e-60 ref|NP_766898.1| two-component response regulator [Bradyrhizobiu... 235 3e-60 ref|NP_768354.1| two component regulator [Bradyrhizobium japonic... 231 4e-59 >ref|YP_004674957.1| transcriptional regulatory protein fixJ [Hyphomicrobium sp. MC1] emb|CCB64383.1| Transcriptional regulatory protein fixJ [Hyphomicrobium sp. MC1] Length = 216 Score = 243 bits (621), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 120/196 (61%), Positives = 151/196 (77%) Query: 1 VLVVDDDLRTRGALSSLFRSVGLGVQAFESAADMLKYPIPSAPSCLVLDIILPQLDGFEL 60 V VVDDD R ALSSLFRSVGL V+ F SAA+ L+ +P PSCLVLDI LP + G + Sbjct: 16 VYVVDDDPALRDALSSLFRSVGLQVEVFGSAAEFLEKKLPEIPSCLVLDIRLPGVSGLDF 75 Query: 61 QVELGRLGNRIPIIFMTGYGDISMSVKAMKAGAIDFLTKPFRDHEMLEAVTRALDRDQKR 120 Q +L + G R+P+IFMTG+GDI MSV+AMKAGAIDFLTKPFRD +ML+AV AL+ D+K+ Sbjct: 76 QAQLAKAGIRMPVIFMTGHGDIPMSVRAMKAGAIDFLTKPFRDQDMLDAVFSALETDRKQ 135 Query: 121 RAEERRTEEIRARFDTLTARERQVMSLVTAGLMNKQVASEIGISERTVKIHRGHVMRKMG 180 ++ ++ A +++LTARE++VM+ VT GLMNKQ+A E+G+SE TVKIHRGHVMRKM Sbjct: 136 LESDQSIADLSAHYESLTAREKEVMAYVTKGLMNKQIAGEMGLSEITVKIHRGHVMRKMA 195 Query: 181 TESLADLVLIAESLGV 196 SLADLV AE LG+ Sbjct: 196 VRSLADLVRAAEKLGL 211 >ref|YP_003695646.1| LuxR family transcriptional regulator [Starkeya novella DSM 506] gb|ADH91027.1| two component transcriptional regulator, LuxR family [Starkeya novella DSM 506] Length = 218 Score = 238 bits (606), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 119/201 (59%), Positives = 152/201 (75%) Query: 1 VLVVDDDLRTRGALSSLFRSVGLGVQAFESAADMLKYPIPSAPSCLVLDIILPQLDGFEL 60 V+VVDDD R ALSSLFRSVGL V+ F SAA++L +P CLVLDI LP + G + Sbjct: 18 VIVVDDDPALREALSSLFRSVGLQVELFASAAELLAAKLPEVARCLVLDIRLPGVSGLDF 77 Query: 61 QVELGRLGNRIPIIFMTGYGDISMSVKAMKAGAIDFLTKPFRDHEMLEAVTRALDRDQKR 120 Q +L R +P IFMTG+GDI M+V+AMKAGA+DFLTKPFRD +ML+AV A+ D++R Sbjct: 78 QAQLARSEIEMPTIFMTGHGDIPMTVRAMKAGAVDFLTKPFRDQDMLDAVASAIRLDRER 137 Query: 121 RAEERRTEEIRARFDTLTARERQVMSLVTAGLMNKQVASEIGISERTVKIHRGHVMRKMG 180 R + ++ ++TLT RE+QVM LVT+GLMNKQVA+E+G+SE TVKIHRGHVMRKMG Sbjct: 138 REARKAVSGVQNLYETLTPREKQVMELVTSGLMNKQVAAEVGLSEITVKIHRGHVMRKMG 197 Query: 181 TESLADLVLIAESLGVRSRRR 201 SLA+LV +AE+LG+ S +R Sbjct: 198 AHSLAELVRMAETLGLSSAKR 218 >ref|YP_001525197.1| nodulation protein W [Azorhizobium caulinodans ORS 571] dbj|BAF88279.1| nodulation protein W [Azorhizobium caulinodans ORS 571] Length = 218 Score = 236 bits (601), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 118/196 (60%), Positives = 150/196 (76%) Query: 1 VLVVDDDLRTRGALSSLFRSVGLGVQAFESAADMLKYPIPSAPSCLVLDIILPQLDGFEL 60 V+VVDDD R ALSSLFRSVGL V F SA +ML P+P AP CLVLDI LP + G + Sbjct: 18 VIVVDDDAGLREALSSLFRSVGLEVALFASALEMLAAPLPDAPRCLVLDIRLPGVSGLDF 77 Query: 61 QVELGRLGNRIPIIFMTGYGDISMSVKAMKAGAIDFLTKPFRDHEMLEAVTRALDRDQKR 120 Q +L R +PIIFMTG+GDI MSV+AMKAGA+DFLTKPFRD +ML+AV A+ D+ R Sbjct: 78 QQQLTRQDVDMPIIFMTGHGDIPMSVRAMKAGALDFLTKPFRDQDMLDAVLAAIAMDRTR 137 Query: 121 RAEERRTEEIRARFDTLTARERQVMSLVTAGLMNKQVASEIGISERTVKIHRGHVMRKMG 180 R E ++ +R +++LT RE+Q+M LVT+GLMNKQVA+E+G+SE TVKI+RG+VMRKM Sbjct: 138 RDERAASDHVRTLYESLTEREKQIMGLVTSGLMNKQVAAEVGLSEITVKIYRGNVMRKMA 197 Query: 181 TESLADLVLIAESLGV 196 S ADLV +AE++G+ Sbjct: 198 ARSFADLVRMAEAVGL 213 >ref|NP_766898.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC45523.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 223 Score = 235 bits (599), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 126/203 (62%), Positives = 154/203 (75%) Query: 1 VLVVDDDLRTRGALSSLFRSVGLGVQAFESAADMLKYPIPSAPSCLVLDIILPQLDGFEL 60 V++VDDD R +L SLFRSVGL + F S A++L +P P C+VLD+ LP + G +L Sbjct: 18 VIIVDDDAGIRASLDSLFRSVGLETRLFGSPAELLGGSLPGGPGCIVLDVRLPGVSGLDL 77 Query: 61 QVELGRLGNRIPIIFMTGYGDISMSVKAMKAGAIDFLTKPFRDHEMLEAVTRALDRDQKR 120 Q +L R G PIIFMTG+GDI MSV+AMKAGA+DFL+KPFRD +ML+AVT AL+RD + Sbjct: 78 QSQLVRQGISYPIIFMTGHGDIPMSVRAMKAGAVDFLSKPFRDQDMLDAVTAALERDAQH 137 Query: 121 RAEERRTEEIRARFDTLTARERQVMSLVTAGLMNKQVASEIGISERTVKIHRGHVMRKMG 180 RAE E+IRA++ TLTARER+VM VTAGLMNKQVA+ IG+SE TVKIHRG+VMRKMG Sbjct: 138 RAEAATKEDIRAQYGTLTAREREVMGHVTAGLMNKQVAALIGLSEITVKIHRGNVMRKMG 197 Query: 181 TESLADLVLIAESLGVRSRRRNT 203 SLADLV AE+LGV R T Sbjct: 198 VRSLADLVRKAEALGVSQTRGTT 220 >ref|NP_768354.1| two component regulator [Bradyrhizobium japonicum USDA 110] sp|P15940.1|NODW_BRAJA RecName: Full=Nodulation protein W gb|AAG60697.1|AF322012_2 NodW [Bradyrhizobium japonicum] gb|AAA26232.1| nodulation protein (nodW; gtg start) [Bradyrhizobium japonicum] dbj|BAC46979.1| two component regulator [Bradyrhizobium japonicum USDA 110] Length = 227 Score = 231 bits (590), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 112/196 (57%), Positives = 150/196 (76%) Query: 1 VLVVDDDLRTRGALSSLFRSVGLGVQAFESAADMLKYPIPSAPSCLVLDIILPQLDGFEL 60 V VV+DD+ R +L++LFRSVGL V AF SA +ML+ +P SCLVLD+ LP L G + Sbjct: 22 VFVVEDDISMRRSLTNLFRSVGLEVVAFGSAREMLQSTMPDVTSCLVLDVRLPGLSGLDY 81 Query: 61 QVELGRLGNRIPIIFMTGYGDISMSVKAMKAGAIDFLTKPFRDHEMLEAVTRALDRDQKR 120 Q EL RL IPIIF+TG+GDI M+V+AMK GA+DFL+KPFRD E+L+AV A +RD+KR Sbjct: 82 QTELARLNIHIPIIFITGHGDIPMTVRAMKGGAVDFLSKPFRDQELLDAVVAATERDRKR 141 Query: 121 RAEERRTEEIRARFDTLTARERQVMSLVTAGLMNKQVASEIGISERTVKIHRGHVMRKMG 180 R +R +++ F+TL+ RE+ VM LV GLMNKQVA+E+G++E TVKI+RGHVM+KM Sbjct: 142 REAQRTVANLKSLFETLSPREQAVMKLVATGLMNKQVAAELGLAEITVKIYRGHVMKKMR 201 Query: 181 TESLADLVLIAESLGV 196 SLADL+ ++E+LG+ Sbjct: 202 ARSLADLIRMSETLGI 217