BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0066.0070.p         (98 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001603002.1| RNA polymerase sigma-70 factor [Gluconacetob...   108   2e-22
ref|YP_002276078.1| ECF subfamily RNA polymerase sigma-24 subuni...   107   8e-22
ref|ZP_01040443.1| RNA polymerase sigma-70 factor, ECF subfamily...    92   3e-17
ref|ZP_01863860.1| hypothetical protein ED21_21004 [Erythrobacte...    91   5e-17
ref|YP_458959.1| hypothetical protein ELI_10350 [Erythrobacter l...    89   3e-16

>ref|YP_001603002.1| RNA polymerase sigma-70 factor [Gluconacetobacter diazotrophicus
           PAl 5]
 emb|CAP56708.1| putative RNA polymerase sigma-70 factor [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 176

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 57/96 (59%), Positives = 71/96 (73%), Gaps = 1/96 (1%)

Query: 2   AIARYKWVDRIRDASRFAALSLEDEIAIEDHGEAAISAAARNXDLLGRLKPAQARVIRLV 61
           AIARYKW+DR+R ASR     L+D++ ++DH E   +A A    LLG+LKPAQA  IRLV
Sbjct: 75  AIARYKWIDRLRAASRANDAPLDDDLPVQDHEEQVTTAYALER-LLGQLKPAQAEAIRLV 133

Query: 62  KLGGLSIARASGVTGQSAALVKINIHRGLKKLSALV 97
           KL GLSI  A+  TGQSA LVK+NIHRGL +++ALV
Sbjct: 134 KLRGLSIEEAARRTGQSATLVKVNIHRGLNRMNALV 169


>ref|YP_002276078.1| ECF subfamily RNA polymerase sigma-24 subunit [Gluconacetobacter
           diazotrophicus PAl 5]
 gb|ACI51463.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 167

 Score =  107 bits (266), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 56/96 (58%), Positives = 70/96 (72%), Gaps = 1/96 (1%)

Query: 2   AIARYKWVDRIRDASRFAALSLEDEIAIEDHGEAAISAAARNXDLLGRLKPAQARVIRLV 61
           AIARYKW+DR+R ASR     L+D++ ++DH E   +A A    LLG+LKPAQA  IRLV
Sbjct: 66  AIARYKWIDRLRAASRANDAPLDDDLPVQDHEEQVTTAYALER-LLGQLKPAQAEAIRLV 124

Query: 62  KLGGLSIARASGVTGQSAALVKINIHRGLKKLSALV 97
           KL GLSI  A+  TGQS  LVK+NIHRGL +++ALV
Sbjct: 125 KLRGLSIEEAARRTGQSVTLVKVNIHRGLTRMNALV 160


>ref|ZP_01040443.1| RNA polymerase sigma-70 factor, ECF subfamily protein
           [Erythrobacter sp. NAP1]
 gb|EAQ28092.1| RNA polymerase sigma-70 factor, ECF subfamily protein
           [Erythrobacter sp. NAP1]
          Length = 176

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 49/97 (50%), Positives = 64/97 (65%)

Query: 2   AIARYKWVDRIRDASRFAALSLEDEIAIEDHGEAAISAAARNXDLLGRLKPAQARVIRLV 61
           AIARY+WVD +R   +  A  L ++ A+ED  E  + A      L G+L   QA  I+LV
Sbjct: 77  AIARYRWVDHLRKVYKHDAKELFEDDAVEDSEEEVVLARVSLDRLFGQLPDKQAEAIQLV 136

Query: 62  KLGGLSIARASGVTGQSAALVKINIHRGLKKLSALVS 98
           K+GGLSI  A+  TGQS +LVK+NIHRGLKKL+A+V 
Sbjct: 137 KIGGLSIREAAEKTGQSESLVKVNIHRGLKKLAAMVE 173


>ref|ZP_01863860.1| hypothetical protein ED21_21004 [Erythrobacter sp. SD-21]
 gb|EDL49199.1| hypothetical protein ED21_21004 [Erythrobacter sp. SD-21]
          Length = 176

 Score = 91.3 bits (225), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 53/97 (54%), Positives = 60/97 (61%)

Query: 2   AIARYKWVDRIRDASRFAALSLEDEIAIEDHGEAAISAAARNXDLLGRLKPAQARVIRLV 61
           AIARY+WVD +R   R A   L D    ED  E A+ A      L   L   QA+ I LV
Sbjct: 77  AIARYRWVDHLRKVYRSAEDELGDHDVAEDSEEEAVMARMSLERLFVHLPDKQAKAIELV 136

Query: 62  KLGGLSIARASGVTGQSAALVKINIHRGLKKLSALVS 98
           K+ GLSIA AS  TGQS +LVK+NIHRGLKKLSALV 
Sbjct: 137 KIEGLSIAEASQRTGQSESLVKVNIHRGLKKLSALVE 173


>ref|YP_458959.1| hypothetical protein ELI_10350 [Erythrobacter litoralis HTCC2594]
 gb|ABC64162.1| hypothetical protein ELI_10350 [Erythrobacter litoralis HTCC2594]
          Length = 176

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/97 (50%), Positives = 60/97 (61%)

Query: 2   AIARYKWVDRIRDASRFAALSLEDEIAIEDHGEAAISAAARNXDLLGRLKPAQARVIRLV 61
           AIARY+WVD +R   R  A  LED  A E+  E A+ A      L  +L   QA VI +V
Sbjct: 77  AIARYRWVDHLRKVYRTEADQLEDWDAPEESSEEAVLARLSLERLFVKLPEKQAEVIEMV 136

Query: 62  KLGGLSIARASGVTGQSAALVKINIHRGLKKLSALVS 98
           K+ GLSI  AS  +GQS +LVK+NIHRGLKKL  L+ 
Sbjct: 137 KIEGLSIKEASAKSGQSESLVKVNIHRGLKKLGTLIE 173