BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0066.0066.p (417 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001525636.1| cytochrome-c oxidase [Azorhizobium caulinoda... 442 e-122 ref|YP_004143244.1| gluconate 2-dehydrogenase (acceptor) [Mesorh... 437 e-120 ref|YP_004472634.1| gluconate 2-dehydrogenase (acceptor) [Pseudo... 429 e-118 ref|YP_004212838.1| gluconate 2-dehydrogenase (acceptor) [Rahnel... 418 e-115 ref|ZP_06897062.1| gluconate 2-dehydrogenase (acceptor) [Roseomo... 417 e-114 >ref|YP_001525636.1| cytochrome-c oxidase [Azorhizobium caulinodans ORS 571] dbj|BAF88718.1| putative cytochrome-c oxidase protein [Azorhizobium caulinodans ORS 571] Length = 417 Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust. Identities = 217/392 (55%), Positives = 273/392 (69%), Gaps = 5/392 (1%) Query: 30 SDPQEFTEIERGRYLAITSDCASCHTVPGGKPFAGGRPIETPFGNIVAPNITPDLETGIG 89 +D Q+F IERGRYLA DC SCHT PGGKPFAGGR I TPFG I PNITPD +TG+G Sbjct: 26 ADGQDFVTIERGRYLATAGDCISCHTAPGGKPFAGGRGIMTPFGVIYTPNITPDRDTGLG 85 Query: 90 AWSEEAFDGAVRKGVRPNGARLYPAMPYNAYTKMSRDDVDAIRAYLNSLDPVSNVVIANT 149 AWS + F A++ GV NG LYPA+PY YTK+ RDD+ AI+AYL++LDPV N N Sbjct: 86 AWSNDQFVAAMQHGVGQNGELLYPALPYPYYTKVRRDDLVAIKAYLDTLDPVRNEAPPNG 145 Query: 150 LPFPFNIRATMRIWDALYFKAGEFRPDPAKSAEWNRGAFLVDGPAHCGACHTPKTFLGGD 209 LPFP N+R + W+ L+F GEF+PD AKS EWNRGA+LV+G HCGACHTPK LGGD Sbjct: 146 LPFPLNVRTALLGWNMLFFTPGEFKPDAAKSEEWNRGAYLVEGLGHCGACHTPKNQLGGD 205 Query: 210 RTDQYLQGSYLQGWSAPDITNDKRMGLGEWSAEDVASYLKTGHNRISAATGPMAEAVSLS 269 +TD+ L G L W AP++ +D R GLG WS ED+ YLKTG N SAA+GPMAE V S Sbjct: 206 KTDKVLAGGVLDEWYAPNLGSDLRTGLGAWSVEDIVQYLKTGRNAKSAASGPMAEVVYYS 265 Query: 270 TSHMTDEDTRAIAAYLKS--LPGKAGIETPLPANSATMSAGNAIYRDQCSACHGIEGKGV 327 T HMTD D +A+A YLK A PLPA M AG A+Y+D CSACH G G+ Sbjct: 266 TQHMTDADLKAMATYLKDRPSAPAAPAPKPLPAEDPVMKAGLAVYQDNCSACHVSTGAGI 325 Query: 328 AKLFPSVASSSIVRSNDPTTAIRMVLRGARSVGTRGEPTAPGMPSYGWQLDDGQVAAVLN 387 A+LFP++ S++V++++ T +R++ +G R+ T+ PT PGMP++ W+L+D Q AAV+ Sbjct: 326 ARLFPALKDSAVVQADEVQTLVRIIDQGTRATATKTAPTGPGMPAFNWKLNDVQTAAVIT 385 Query: 388 YIRNSWGGAAPAIDARDVSRVR---SDTAARP 416 YIRN+WG AA + A DV R+R +DTAA P Sbjct: 386 YIRNAWGNAAAPVSAEDVKRIRGRLTDTAATP 417 >ref|YP_004143244.1| gluconate 2-dehydrogenase (acceptor) [Mesorhizobium ciceri biovar biserrulae WSM1271] gb|ADV13194.1| Gluconate 2-dehydrogenase (acceptor) [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 405 Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust. Identities = 218/410 (53%), Positives = 271/410 (66%), Gaps = 11/410 (2%) Query: 4 NKSVAVLLAGSAALWLVATQRAQAGGS--DPQEFTEIERGRYLAITSDCASCHTVPGGKP 61 NK V L G+AAL GG + +I RG+Y A+ DCA CHT GKP Sbjct: 2 NKLVLTLAIGAAAL---------TGGPAWSADQADQIIRGQYQAVLGDCAGCHTRAEGKP 52 Query: 62 FAGGRPIETPFGNIVAPNITPDLETGIGAWSEEAFDGAVRKGVRPNGARLYPAMPYNAYT 121 AGG P+ETPFG +V PNITPD ETGIG+WSE F ++ G+ NG RLYPAMPY AYT Sbjct: 53 LAGGLPLETPFGALVPPNITPDRETGIGSWSEADFRSMMKSGIGHNGVRLYPAMPYPAYT 112 Query: 122 KMSRDDVDAIRAYLNSLDPVSNVVIANTLPFPFNIRATMRIWDALYFKAGEFRPDPAKSA 181 +M+ D+ + AYL ++ PVSN V AN LPFP NIR M W+AL F F+PDP+K A Sbjct: 113 RMNDRDISDLWAYLTTVQPVSNKVEANQLPFPLNIRLAMLGWNALNFTEASFQPDPSKPA 172 Query: 182 EWNRGAFLVDGPAHCGACHTPKTFLGGDRTDQYLQGSYLQGWSAPDITNDKRMGLGEWSA 241 EWNRGA++V G HCG CH+PK+FLG D+ ++LQG+ LQGW APDITN+ + GLG+WS Sbjct: 173 EWNRGAYIVQGAGHCGTCHSPKSFLGADKDSEFLQGASLQGWFAPDITNNAQSGLGKWSE 232 Query: 242 EDVASYLKTGHNRISAATGPMAEAVSLSTSHMTDEDTRAIAAYLKSLPGKAGIETPLPAN 301 ED+ YLKTG N S A+GPMAEA+ STS MTD D +A+A YLKSL P + Sbjct: 233 EDLVKYLKTGVNAHSIASGPMAEAIENSTSKMTDPDLKAVAVYLKSLGSDVDSAQPAKPD 292 Query: 302 SATMSAGNAIYRDQCSACHGIEGKGVAKLFPSVASSSIVRSNDPTTAIRMVLRGARSVGT 361 + M+AG AIYRD CSACHG +G G LFPS+A +SIV T R+VL G+++V T Sbjct: 293 ATRMTAGEAIYRDNCSACHGGDGAGSGALFPSLAGNSIVAQGSSETLARLVLAGSQAVHT 352 Query: 362 RGEPTAPGMPSYGWQLDDGQVAAVLNYIRNSWGGAAPAIDARDVSRVRSD 411 PT P MPS W+L D +VA VL Y+R SWG AAPA+ + DV+ VR + Sbjct: 353 ADAPTTPAMPSLAWRLKDQEVADVLTYVRASWGNAAPAVSSGDVAAVRKE 402 >ref|YP_004472634.1| gluconate 2-dehydrogenase (acceptor) [Pseudomonas fulva 12-X] gb|AEF20540.1| Gluconate 2-dehydrogenase (acceptor) [Pseudomonas fulva 12-X] Length = 408 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 208/405 (51%), Positives = 268/405 (66%), Gaps = 3/405 (0%) Query: 7 VAVLLAGSAALWLVATQRAQA-GGSDPQEFTEIERGRYLAITSDCASCHTVPGGKPFAGG 65 + LL S AL A+ A A GG D E +E+GRY++ DC +CHTVPG F+GG Sbjct: 1 MKTLLNVSFALLATASAGAHALGGQDSYEL--VEKGRYISTLGDCTACHTVPGKPLFSGG 58 Query: 66 RPIETPFGNIVAPNITPDLETGIGAWSEEAFDGAVRKGVRPNGARLYPAMPYNAYTKMSR 125 I+TPFG ++ NITPD ETGIG WS E F ++ +G R +G +LYPAMPY+AYTK++R Sbjct: 59 VAIDTPFGKLLGANITPDQETGIGRWSFEEFQASMARGHRRDGKQLYPAMPYSAYTKVTR 118 Query: 126 DDVDAIRAYLNSLDPVSNVVIANTLPFPFNIRATMRIWDALYFKAGEFRPDPAKSAEWNR 185 D A+ AYL +++PV N V N LPFPF++R M++W+ + F+ GEF+P+ KSAEWNR Sbjct: 119 ADNQALWAYLRTIEPVHNKVETNQLPFPFSLRMNMKVWNWMNFEQGEFKPEADKSAEWNR 178 Query: 186 GAFLVDGPAHCGACHTPKTFLGGDRTDQYLQGSYLQGWSAPDITNDKRMGLGEWSAEDVA 245 GA+LV G HCG+CHTPK LGGD+ ++LQG LQGW AP+IT +GLG+WS D+ Sbjct: 179 GAYLVQGLGHCGSCHTPKNLLGGDKNAEFLQGGVLQGWMAPNITGAAHVGLGDWSEADIV 238 Query: 246 SYLKTGHNRISAATGPMAEAVSLSTSHMTDEDTRAIAAYLKSLPGKAGIETPLPANSATM 305 YLKTG NR A+GPMAEAV ST H DED A+A YLK L + PL A+ M Sbjct: 239 QYLKTGANRFDIASGPMAEAVEHSTQHWRDEDLMAVAVYLKDLDHEHDKPKPLAADDPVM 298 Query: 306 SAGNAIYRDQCSACHGIEGKGVAKLFPSVASSSIVRSNDPTTAIRMVLRGARSVGTRGEP 365 AG+AIY D+CS CH G G+A LFP +A++ +V + D + IR+VL G R+V T P Sbjct: 299 KAGSAIYADRCSGCHTPNGDGIATLFPKLANAPLVNAQDAASMIRVVLAGNRAVSTDAAP 358 Query: 366 TAPGMPSYGWQLDDGQVAAVLNYIRNSWGGAAPAIDARDVSRVRS 410 T P MP++ W L D VA VL YIRNSWG AA I A +V + R Sbjct: 359 TGPAMPAFAWNLSDENVADVLTYIRNSWGNAAAPISADEVRKQRE 403 >ref|YP_004212838.1| gluconate 2-dehydrogenase (acceptor) [Rahnella sp. Y9602] gb|ADW73711.1| Gluconate 2-dehydrogenase (acceptor) [Rahnella sp. Y9602] Length = 411 Score = 418 bits (1075), Expect = e-115, Method: Compositional matrix adjust. Identities = 205/411 (49%), Positives = 267/411 (64%), Gaps = 8/411 (1%) Query: 5 KSVAVLLAGSAALWLVATQRAQAGGSDPQEFTEIERGRYLAITSDCASCHT--VPGGKPF 62 K + G AL + A GS F ++ERGRYLA DCA+CHT P KPF Sbjct: 2 KKLTSFSLGLLALSISGLAHAAGDGS----FEQVERGRYLATVGDCAACHTASTPDAKPF 57 Query: 63 AGGRPIETPFGNIVAPNITPDLETGIGAWSEEAFDGAVRKGVRPNGARLYPAMPYNAYTK 122 AGG PIETPFG +V NITPD++TGIG W+ + F A+ +G+ G RLY AMP+ AYTK Sbjct: 58 AGGVPIETPFGRLVGANITPDVQTGIGKWTFDDFQRAMSEGIGHGGKRLYGAMPFTAYTK 117 Query: 123 MSRDDVDAIRAYLNSLDPVSNVVIANTLPFPFNIRATMRIWDALYFKAGEFRPDPAKSAE 182 ++R+D AI AYL +L PV + V N LPFPFN+R ++ W+ L F GEF+P KSAE Sbjct: 118 VTREDNAAIWAYLQTLQPVHHEVETNQLPFPFNVRTSLMGWNWLSFTQGEFKPQRDKSAE 177 Query: 183 WNRGAFLVDGPAHCGACHTPKTFLGGDRTDQYLQGSYLQGWSAPDITNDKRMGLGEWSAE 242 WNRGA++V+G HCG CHTPK +GGD+ ++LQG+ ++GW APDIT++K G+G W+ E Sbjct: 178 WNRGAYIVEGLGHCGTCHTPKNMIGGDKDSEFLQGAVVEGWVAPDITSNKHTGVGNWTQE 237 Query: 243 DVASYLKTGHNRISAATGPMAEAVSLSTSHMTDEDTRAIAAYLKSLPGKAGIETPLP--A 300 D+ YLKTG NR A+GPMAE V+ S+ H TD D +A+A YLK +G + P P A Sbjct: 238 DLMQYLKTGSNRFDIASGPMAEEVTNSSQHWTDADLKAVAVYLKDSGHDSGSKAPAPVKA 297 Query: 301 NSATMSAGNAIYRDQCSACHGIEGKGVAKLFPSVASSSIVRSNDPTTAIRMVLRGARSVG 360 + M AG IY D+CSACH GKG LFP +A S ++ + T+ IR+VL G+R V Sbjct: 298 DDKAMVAGKNIYADRCSACHTPAGKGQEGLFPRLADSPLINQTNATSLIRVVLTGSRPVA 357 Query: 361 TRGEPTAPGMPSYGWQLDDGQVAAVLNYIRNSWGGAAPAIDARDVSRVRSD 411 T +PTAP MPS+ + D VA VL YIRNSWG AA + A DV +R++ Sbjct: 358 TDSQPTAPSMPSFDANMSDADVANVLTYIRNSWGNAAAPVSASDVKELRAE 408 >ref|ZP_06897062.1| gluconate 2-dehydrogenase (acceptor) [Roseomonas cervicalis ATCC 49957] gb|EFH11233.1| gluconate 2-dehydrogenase (acceptor) [Roseomonas cervicalis ATCC 49957] Length = 407 Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust. Identities = 209/387 (54%), Positives = 268/387 (69%), Gaps = 1/387 (0%) Query: 30 SDPQEFTEIERGRYLAITSDCASCHTVPGGKPFAGGRPIETPFGNIVAPNITPDLETGIG 89 +DP FTE+ERGRYLA DC +CH P + AGG +ETPFG I PNITPD ETGIG Sbjct: 21 ADPDNFTEVERGRYLARAGDCIACHLGPDRQSLAGGHRLETPFGAIAVPNITPDAETGIG 80 Query: 90 AWSEEAFDGAVRKGVRPNGARLYPAMPYNAYTKMSRDDVDAIRAYLNSLDPVSNVVIANT 149 +WS + F A+ KGVRP+G+ LYPA PY A+T++SR D DAI AYL +L+PV N V +T Sbjct: 81 SWSADDFHRAMHKGVRPDGSHLYPAFPYTAFTRLSRQDNDAIYAYLRTLEPVRNAVDRDT 140 Query: 150 LPFPFNIRATMRIWDALYFKAGEFRPDPAKSAEWNRGAFLVDGPAHCGACHTPKTFLGGD 209 LPFPFNIRA M +W+ L F GEFRPDP +SA +NRGA+LV+GPAHCG CHTP+ LGGD Sbjct: 141 LPFPFNIRALMGVWNWLNFTPGEFRPDPQRSAAYNRGAYLVEGPAHCGLCHTPRNLLGGD 200 Query: 210 RTDQYLQGSYLQGWSAPDITNDKRMGLGEWSAEDVASYLKTGHNRISAATGPMAEAVSLS 269 + Q+L+G LQ W AP+IT D+R+G+G WS +++ YL+TG N SAA+GPMAE VS S Sbjct: 201 KDGQHLRGGALQDWFAPNITADRRVGIGGWSEDEMVEYLRTGRNTHSAASGPMAEVVSYS 260 Query: 270 TSHMTDEDTRAIAAYLKSL-PGKAGIETPLPANSATMSAGNAIYRDQCSACHGIEGKGVA 328 TS MT+ D RAIA YL+ PL A M AG AIY D C+ACH G GV Sbjct: 261 TSRMTEPDLRAIATYLRERGAAAEAPPAPLAAEEPRMQAGAAIYADSCAACHRGNGMGVD 320 Query: 329 KLFPSVASSSIVRSNDPTTAIRMVLRGARSVGTRGEPTAPGMPSYGWQLDDGQVAAVLNY 388 ++FP +A S++V+ D T+ +RM+L+G ++ T PTAP MP++GW+++D QVA V Y Sbjct: 321 RMFPRLAGSALVQQGDATSILRMILQGGQAAATPLAPTAPAMPAFGWRMNDRQVADVATY 380 Query: 389 IRNSWGGAAPAIDARDVSRVRSDTAAR 415 +RN+WG AAP + V +R A R Sbjct: 381 LRNAWGNAAPPVAPERVGALRESLAGR 407