BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0066.0059.p         (44 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_766811.1| hypothetical protein blr0171 [Bradyrhizobium ja...    68   4e-10
ref|YP_001243418.1| hypothetical protein BBta_7669 [Bradyrhizobi...    51   6e-05
ref|YP_782563.1| hypothetical protein RPE_3653 [Rhodopseudomonas...    51   7e-05
ref|NP_949340.1| hypothetical protein RPA4003 [Rhodopseudomonas ...    45   0.004
ref|YP_001639664.1| hypothetical protein Mext_2198 [Methylobacte...    42   0.025

>ref|NP_766811.1| hypothetical protein blr0171 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC45436.1| blr0171 [Bradyrhizobium japonicum USDA 110]
          Length = 156

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/44 (90%), Positives = 42/44 (95%)

Query: 1   MAKGQQRGNREAKKPKKEKAKVIAAAPSRKEAAWQPDFGPAKKK 44
           MAKGQQRGNRE KKPKK+K KVIAAAPSRK+AAWQPDFGPAKKK
Sbjct: 113 MAKGQQRGNRETKKPKKDKTKVIAAAPSRKDAAWQPDFGPAKKK 156


>ref|YP_001243418.1| hypothetical protein BBta_7669 [Bradyrhizobium sp. BTAi1]
 gb|ABQ39512.1| hypothetical protein BBta_7669 [Bradyrhizobium sp. BTAi1]
          Length = 113

 Score = 51.2 bits (121), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/44 (77%), Positives = 36/44 (81%)

Query: 1   MAKGQQRGNREAKKPKKEKAKVIAAAPSRKEAAWQPDFGPAKKK 44
           MAKGQQ+GNREAKKPKKEK K IAAAPS+K   WQPDF   KKK
Sbjct: 69  MAKGQQKGNREAKKPKKEKPKSIAAAPSQKAGGWQPDFSSDKKK 112


>ref|YP_782563.1| hypothetical protein RPE_3653 [Rhodopseudomonas palustris BisA53]
 gb|ABJ07583.1| conserved hypothetical protein [Rhodopseudomonas palustris
          BisA53]
          Length = 44

 Score = 50.8 bits (120), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/44 (72%), Positives = 36/44 (81%)

Query: 1  MAKGQQRGNREAKKPKKEKAKVIAAAPSRKEAAWQPDFGPAKKK 44
          MAKG+Q+GNREAKKPKK+K K IAAAPS+K A WQP  G  KKK
Sbjct: 1  MAKGEQKGNREAKKPKKDKVKTIAAAPSQKTAGWQPTIGTGKKK 44


>ref|NP_949340.1| hypothetical protein RPA4003 [Rhodopseudomonas palustris CGA009]
 ref|YP_001993497.1| hypothetical protein Rpal_4527 [Rhodopseudomonas palustris TIE-1]
 emb|CAE29444.1| conserved hypothetical protein [Rhodopseudomonas palustris
          CGA009]
 gb|ACF03022.1| conserved hypothetical protein [Rhodopseudomonas palustris TIE-1]
          Length = 45

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/44 (70%), Positives = 34/44 (77%)

Query: 1  MAKGQQRGNREAKKPKKEKAKVIAAAPSRKEAAWQPDFGPAKKK 44
          MAKG+Q+ NREAKKPKKEK K IAAAPS+K   WQP F   KKK
Sbjct: 1  MAKGEQKSNREAKKPKKEKVKTIAAAPSQKPGGWQPSFDSGKKK 44


>ref|YP_001639664.1| hypothetical protein Mext_2198 [Methylobacterium extorquens PA1]
 ref|YP_002421246.1| hypothetical protein Mchl_2476 [Methylobacterium chloromethanicum
          CM4]
 gb|ABY30593.1| hypothetical protein Mext_2198 [Methylobacterium extorquens PA1]
 gb|ACK83318.1| conserved hypothetical protein [Methylobacterium chloromethanicum
          CM4]
          Length = 42

 Score = 42.4 bits (98), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 22/31 (70%), Positives = 24/31 (77%)

Query: 1  MAKGQQRGNREAKKPKKEKAKVIAAAPSRKE 31
          MA  ++RGNRE KKPKK  AKVIAAAPS K 
Sbjct: 1  MATEKKRGNRETKKPKKSTAKVIAAAPSTKN 31