BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0066.0047.p         (187 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_07026258.1| integrase family protein [Afipia sp. 1NLS2] >...   264   4e-69
ref|YP_002277118.1| integrase family protein [Gluconacetobacter ...   264   6e-69
ref|YP_002287248.1| phage integrase [Oligotropha carboxidovorans...   259   1e-67
ref|YP_003545486.1| putative integrase [Sphingobium japonicum UT...   259   2e-67
ref|ZP_08666312.1| integrase [Paracoccus sp. TRP]                     258   3e-67

>ref|ZP_07026258.1| integrase family protein [Afipia sp. 1NLS2]
 gb|EFI53400.1| integrase family protein [Afipia sp. 1NLS2]
          Length = 451

 Score =  264 bits (675), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 131/171 (76%), Positives = 148/171 (86%), Gaps = 1/171 (0%)

Query: 1   MVKITKRVVEAAEAQEKDYVIWDDELSGFGVRVFSSGKRSYVIQYRIGGRSRRYTIGLHG 60
           M K+TKR+V+AAE++EKDYVIWDDEL GFG+RVF+SGKRSYV+QYR  GRSRRYTIGLHG
Sbjct: 1   MAKLTKRLVDAAESREKDYVIWDDELPGFGLRVFASGKRSYVLQYRALGRSRRYTIGLHG 60

Query: 61  AWTLETARREAKVQLGRVAGGDDPAEDRRLDHKAITVKELCGRYFADLQAGLILGKGGRP 120
            WT E+AR+EAKVQLGRVA GD+PAE+R+LDHKAITVKELC  Y  DL AGLILGKGGRP
Sbjct: 61  VWTAESARQEAKVQLGRVAQGDNPAEERQLDHKAITVKELCTLYVNDLNAGLILGKGGRP 120

Query: 121 KKASTIVTDTGRIHRHIIPLIGTRRVKDLTKSDINKXRNPSPAAFTTRVTV 171
           KK +TIVTDTGRI RHIIPL+GTRRVKDLTK+DINK      A   TRV+V
Sbjct: 121 KKPTTIVTDTGRIERHIIPLLGTRRVKDLTKADINKVLKDIMAG-KTRVSV 170


>ref|YP_002277118.1| integrase family protein [Gluconacetobacter diazotrophicus PAl 5]
 gb|ACI52503.1| integrase family protein [Gluconacetobacter diazotrophicus PAl 5]
          Length = 452

 Score =  264 bits (674), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 126/156 (80%), Positives = 141/156 (90%)

Query: 1   MVKITKRVVEAAEAQEKDYVIWDDELSGFGVRVFSSGKRSYVIQYRIGGRSRRYTIGLHG 60
           M K+TKRVV+AAE++EKDYVIWDDEL GFG+RVF+SGKRSYV+QYR  GRSRRYTIGLHG
Sbjct: 1   MAKLTKRVVDAAESREKDYVIWDDELPGFGLRVFASGKRSYVLQYRALGRSRRYTIGLHG 60

Query: 61  AWTLETARREAKVQLGRVAGGDDPAEDRRLDHKAITVKELCGRYFADLQAGLILGKGGRP 120
            WT E+AR+EAKVQLGRVA GD+PAE+R+LDHKAITVKELC  Y  DL AGLILGKGGRP
Sbjct: 61  VWTAESARQEAKVQLGRVAQGDNPAEERQLDHKAITVKELCALYLKDLNAGLILGKGGRP 120

Query: 121 KKASTIVTDTGRIHRHIIPLIGTRRVKDLTKSDINK 156
           KK  TIVTD GRI+RHIIPL+GTRRVKDLTK+DINK
Sbjct: 121 KKPHTIVTDIGRINRHIIPLLGTRRVKDLTKADINK 156


>ref|YP_002287248.1| phage integrase [Oligotropha carboxidovorans OM5]
 ref|YP_004631252.1| integrase [Oligotropha carboxidovorans OM5]
 gb|ACI91383.1| phage integrase [Oligotropha carboxidovorans OM5]
 gb|AEI01436.1| integrase [Oligotropha carboxidovorans OM4]
 gb|AEI05011.1| integrase [Oligotropha carboxidovorans OM5]
          Length = 451

 Score =  259 bits (662), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 121/156 (77%), Positives = 140/156 (89%)

Query: 1   MVKITKRVVEAAEAQEKDYVIWDDELSGFGVRVFSSGKRSYVIQYRIGGRSRRYTIGLHG 60
           M K+TKRVV+AA A+EKDY IWDDEL GFG+R+F+SGKRSY+IQYR  GR+RR+TIGLHG
Sbjct: 1   MAKLTKRVVDAAVAREKDYFIWDDELPGFGLRIFASGKRSYLIQYRAAGRTRRFTIGLHG 60

Query: 61  AWTLETARREAKVQLGRVAGGDDPAEDRRLDHKAITVKELCGRYFADLQAGLILGKGGRP 120
            WT ETAR+EAKVQLGRVA GD+P+E+R LDH+AITVKELC  Y  DL+AGLILGKGGRP
Sbjct: 61  VWTAETARQEAKVQLGRVAQGDNPSEERLLDHQAITVKELCAMYLKDLEAGLILGKGGRP 120

Query: 121 KKASTIVTDTGRIHRHIIPLIGTRRVKDLTKSDINK 156
           KKA+TIV+DTGRIHRHIIPLIGTRRVKDL K+D+ K
Sbjct: 121 KKATTIVSDTGRIHRHIIPLIGTRRVKDLVKADMTK 156


>ref|YP_003545486.1| putative integrase [Sphingobium japonicum UT26S]
 dbj|BAI96874.1| putative integrase [Sphingobium japonicum UT26S]
          Length = 451

 Score =  259 bits (661), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 119/156 (76%), Positives = 140/156 (89%)

Query: 1   MVKITKRVVEAAEAQEKDYVIWDDELSGFGVRVFSSGKRSYVIQYRIGGRSRRYTIGLHG 60
           MVK+TKR V+AA+  +KDY IWDD+L GFG+RVF+SGKRSY++QYR GGRSRRYTIGLHG
Sbjct: 1   MVKLTKRTVDAAKVSDKDYFIWDDDLPGFGLRVFASGKRSYLVQYRAGGRSRRYTIGLHG 60

Query: 61  AWTLETARREAKVQLGRVAGGDDPAEDRRLDHKAITVKELCGRYFADLQAGLILGKGGRP 120
            WT ETAR+EAKVQLGR+A GD+PAE+R+LDHKA+T+KELC  Y ADL AGLILGKGGRP
Sbjct: 61  VWTAETARQEAKVQLGRIAHGDNPAEERQLDHKALTIKELCALYVADLNAGLILGKGGRP 120

Query: 121 KKASTIVTDTGRIHRHIIPLIGTRRVKDLTKSDINK 156
           KK +TIVTD+GRI RHIIPL+G RRVKDLTK+D+NK
Sbjct: 121 KKQTTIVTDSGRIERHIIPLLGARRVKDLTKADVNK 156


>ref|ZP_08666312.1| integrase [Paracoccus sp. TRP]
          Length = 448

 Score =  258 bits (659), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 126/171 (73%), Positives = 145/171 (84%), Gaps = 1/171 (0%)

Query: 1   MVKITKRVVEAAEAQEKDYVIWDDELSGFGVRVFSSGKRSYVIQYRIGGRSRRYTIGLHG 60
           M K+TKR+V+AA+ +EKDY IWDDEL GFG+RVF+SGKRSY+IQYR  GR+RR+TIGLHG
Sbjct: 1   MAKLTKRIVDAADVREKDYFIWDDELPGFGLRVFTSGKRSYLIQYRAAGRTRRFTIGLHG 60

Query: 61  AWTLETARREAKVQLGRVAGGDDPAEDRRLDHKAITVKELCGRYFADLQAGLILGKGGRP 120
            WT ETAR+EAKVQLGRVA G++P+E+R+LDH+AITVKELC  Y ADL AGLILGKGGRP
Sbjct: 61  IWTAETARQEAKVQLGRVAKGENPSEERQLDHQAITVKELCALYVADLNAGLILGKGGRP 120

Query: 121 KKASTIVTDTGRIHRHIIPLIGTRRVKDLTKSDINKXRNPSPAAFTTRVTV 171
           KK STIVTD GRI RHIIPLIGTRRVKDL K+DINK      A   TRV+V
Sbjct: 121 KKPSTIVTDAGRIERHIIPLIGTRRVKDLVKADINKVLKDIMAG-KTRVSV 170