BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0066.0045.p (300 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773848.1| transcriptional regulator [Bradyrhizobium japon... 479 e-133 ref|YP_001238187.1| LysR family transcriptional regulator [Brady... 461 e-128 ref|ZP_06834531.1| LysR family transcriptional regulator [Glucon... 289 4e-76 ref|ZP_06896762.1| transcriptional regulator [Roseomonas cervica... 258 8e-67 ref|ZP_00961271.1| transcriptional regulator, LysR family protei... 258 9e-67 >ref|NP_773848.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC52473.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 308 Score = 479 bits (1233), Expect = e-133, Method: Compositional matrix adjust. Identities = 250/293 (85%), Positives = 271/293 (92%), Gaps = 1/293 (0%) Query: 1 LEILRAVIRHRTTVAAADELALSQPAVSNALKAMEAQAGFSLFERVNNRLFPTSEAMALY 60 LEILRAVIRHRTTVAAADELALSQPAVSNALK MEAQAGF+LFERVNNRLFPT+EAMALY Sbjct: 6 LEILRAVIRHRTTVAAADELALSQPAVSNALKTMEAQAGFALFERVNNRLFPTAEAMALY 65 Query: 61 KESEAIFALHAKLENRVRDLRECRSGLLSIVATPPFAYGIIPPALSDFLRQRRQTRVFFD 120 KESEAIFALHAKLENRVRDLRE RSG L+IVATPP AY IIP ALS FLR+R +TRVFFD Sbjct: 66 KESEAIFALHAKLENRVRDLRENRSGHLAIVATPPLAYSIIPSALSGFLRRRPETRVFFD 125 Query: 121 LRRYEGIIEGVTSRVAELGFVRGLSHHPGIAHEVVHTGEMVCVMPPKHPLAERPVISASD 180 +RRYEGIIEGV SRVAELGF GL+HHPGIAHEVVHTGEMVCV+PP+HPLA+RPVISA+D Sbjct: 126 VRRYEGIIEGVLSRVAELGFALGLTHHPGIAHEVVHTGEMVCVLPPQHPLADRPVISAAD 185 Query: 181 LVGLPFIGLERGTRLGEAIRESFAQAGAPFQPTVEVRYCNTACVLAAAGVGAAVVDPFSP 240 L GLPFIGLERGTRLGEA+R+SFA+AGAPF+PTVEVRYCNTACVLAAAGVGAAVVDPFSP Sbjct: 186 LSGLPFIGLERGTRLGEAVRDSFARAGAPFRPTVEVRYCNTACVLAAAGVGAAVVDPFSP 245 Query: 241 RQGGSHDLVIKPFTPRTPAVAHMLWSEAEPLSRLAEAFLDEVRQASRAL-GPA 292 RQ G + LV++PFTP T AVA+MLWSEAEPLSRLA+AFL EVR+ S L GPA Sbjct: 246 RQNGGNGLVVRPFTPTTHAVAYMLWSEAEPLSRLAKAFLSEVRKQSALLEGPA 298 >ref|YP_001238187.1| LysR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gb|ABQ34281.1| Putative Transcriptional regulatory protein, LysR family [Bradyrhizobium sp. BTAi1] Length = 329 Score = 461 bits (1185), Expect = e-128, Method: Compositional matrix adjust. Identities = 231/300 (77%), Positives = 255/300 (85%), Gaps = 9/300 (3%) Query: 1 LEILRAVIRHRTTVAAADELALSQPAVSNALKAMEAQAGFSLFERVNNRLFPTSEAMALY 60 LEILRAVIRH TTVAAA+ELALSQPA+SNALKAMEAQAGF+LFERVNNRLFPT EAM LY Sbjct: 6 LEILRAVIRHHTTVAAAEELALSQPAISNALKAMEAQAGFTLFERVNNRLFPTPEAMTLY 65 Query: 61 KESEAIFALHAKLENRVRDLRECRSGLLSIVATPPFAYGIIPPALSDFLRQRRQTRVFFD 120 +ESEAIFALHA+LENRVRDLRE ++G LSIVATPP AY IIPP LS FLR+R QTR+FFD Sbjct: 66 EESEAIFALHARLENRVRDLREQKTGHLSIVATPPLAYSIIPPTLSGFLRRRPQTRMFFD 125 Query: 121 LRRYEGIIEGVTSRVAELGFVRGLSHHPGIAHEVVHTGEMVCVMPPKHPLAERPVISASD 180 +RRYEG++EGV VAELGF GLS HPGIAHEVVHTGEMVCVMPP+H LAER VISA D Sbjct: 126 VRRYEGVVEGVLGSVAELGFALGLSDHPGIAHEVVHTGEMVCVMPPQHSLAERDVISARD 185 Query: 181 LVGLPFIGLERGTRLGEAIRESFAQAGAPFQPTVEVRYCNTACVLAAAGVGAAVVDPFSP 240 L GLP IGLERGTRLGEA+R+SF +A A FQPTVEVRYCNTACVLAA GVG AVVDPFSP Sbjct: 186 LAGLPLIGLERGTRLGEAVRDSFREADAEFQPTVEVRYCNTACVLAATGVGVAVVDPFSP 245 Query: 241 RQGGSHDLVIKPFTPRTPAVAHMLWSEAEPLSRLAEAFLDEVRQASR--------ALGPA 292 RQGG HDLV++PFTP T A++LWSEA PLS LA+ F +EVR A+ A+GPA Sbjct: 246 RQGG-HDLVVRPFTPSTKVSAYVLWSEARPLSNLAKTFRNEVRNAASRTLTGQVDAIGPA 304 >ref|ZP_06834531.1| LysR family transcriptional regulator [Gluconacetobacter hansenii ATCC 23769] gb|EFG84235.1| LysR family transcriptional regulator [Gluconacetobacter hansenii ATCC 23769] Length = 293 Score = 289 bits (739), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 138/282 (48%), Positives = 186/282 (65%), Gaps = 1/282 (0%) Query: 1 LEILRAVIRHRTTVAAADELALSQPAVSNALKAMEAQAGFSLFERVNNRLFPTSEAMALY 60 LEILRA++R+ TTVAA L LSQPA+SNALK ME Q GFSLF+R NNR+FPT E L Sbjct: 6 LEILRAIVRYNTTVAAGRVLGLSQPAISNALKTMEEQVGFSLFQRSNNRIFPTEETKILL 65 Query: 61 KESEAIFALHAKLENRVRDLRECRSGLLSIVATPPFAYGIIPPALSDFLRQRRQTRVFFD 120 E+E IF +H ++E R+ DL+ R G L +VATPP YG++ A+ +++ + FFD Sbjct: 66 NEAETIFEIHKRIEMRIEDLKNNRIGQLRLVATPPLGYGVVAKAIQQIQKKKPNLKAFFD 125 Query: 121 LRRYEGIIEGVTSRVAELGFVRGLSHHPGIAHEVVHTGEMVCVMPPKHPLAERPVISASD 180 + RYE +IE + S +E+GFV G + HPGI +VV+ G MVCVMPP+HPL + V++ D Sbjct: 126 VHRYEDVIEYILSHRSEIGFVMGFAEHPGIVSQVVYKGHMVCVMPPEHPLMKLSVVTPQD 185 Query: 181 LVGLPFIGLERGTRLGEAIRESFAQAGAPFQPTVEVRYCNTACVLAAAGVGAAVVDPFSP 240 LV FI LE GT+LG+A+R +F Q+ VEVRY TAC LA AGVG AVVDP + Sbjct: 186 LVRHRFIALEHGTKLGDALRHAFRQSKQDLHFAVEVRYGLTACALANAGVGVAVVDPLTA 245 Query: 241 RQGGSHDLVIKPFTPRTPAVAHMLWSEAEPLSRLAEAFLDEV 282 + L +PF P +A ++W+E L+R++ F+ EV Sbjct: 246 -DSSQYSLAQRPFVPEISVMASVVWAENRSLTRVSRQFIREV 286 >ref|ZP_06896762.1| transcriptional regulator [Roseomonas cervicalis ATCC 49957] gb|EFH11547.1| transcriptional regulator [Roseomonas cervicalis ATCC 49957] Length = 303 Score = 258 bits (659), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 141/285 (49%), Positives = 187/285 (65%), Gaps = 5/285 (1%) Query: 1 LEILRAVIRHRTTVAAADELALSQPAVSNALKAMEAQAGFSLFERVNNRLFPTSEAMALY 60 LEILRAV+RH+TT+AA L +SQPAVS+A+K +E Q GF LFERVNNRL+PT A ++ Sbjct: 6 LEILRAVLRHQTTMAAGRILGMSQPAVSHAVKQLETQLGFPLFERVNNRLYPTEAARLIH 65 Query: 61 KESEAIFALHAKLENRVRDLRECRSGLLSIVATPPFAYGIIPPALSDFLRQRRQTRVFFD 120 ESE +FA HA LE R+++LR+ ++G L ++ATPP +G+IP AL L ++ R+ FD Sbjct: 66 AESEPLFAQHAALEARLQELRQDKTGRLRLLATPPLGHGVIPEALQRMLARQPGLRITFD 125 Query: 121 LRRYEGIIEGVTSRVAELGFVRGLSHHPGIAHEVVHTGEMVCVMPPKHPLAERPVISASD 180 +RR + ++EGV S AELGF L PG+ + MVCV P HPL PV++ + Sbjct: 126 VRRLDEVVEGVESGAAELGFGVSLEERPGLTLRPLAAARMVCVAAPDHPLLREPVVTPAL 185 Query: 181 LVGLPFIGLERGTRLGEAIRESFAQAGAPFQPTVEVRYCNTACVLAAAGVGAAVVDPFSP 240 L P I LE GTR+G A+R +F +A PF P VEVRY +TA LA AGVG AV+DPFS Sbjct: 186 LRPWPLIALEAGTRMGAALRAAFQEAREPFLPAVEVRYGDTARALAEAGVGVAVIDPFS- 244 Query: 241 RQGGSH--DLVIKPFTPRTPAVAHMLWSEAEPLSRLAEAFLDEVR 283 G+ L ++PF P P+ A ++ PLSR AEA L E+R Sbjct: 245 --AGNRRLPLSVRPFEPAIPSRAVAFFASRLPLSRGAEALLREIR 287 >ref|ZP_00961271.1| transcriptional regulator, LysR family protein [Roseovarius nubinhibens ISM] gb|EAP75511.1| transcriptional regulator, LysR family protein [Roseovarius nubinhibens ISM] Length = 314 Score = 258 bits (658), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 134/286 (46%), Positives = 183/286 (63%), Gaps = 2/286 (0%) Query: 1 LEILRAVIRHRTTVAAADELALSQPAVSNALKAMEAQAGFSLFERVNNRLFPTSEAMALY 60 LE+ A++ H+TTV AA++L +SQPAVS A++ +E Q GF LFER N RL PT EA L+ Sbjct: 14 LEVFGAMMTHQTTVQAAEDLGISQPAVSLAIRQLEEQLGFQLFERRNRRLVPTQEARILF 73 Query: 61 KESEAIFALHAKLENRVRDLRECRSGLLSIVATPPFAYGIIPPALSDFLRQRRQTRVFFD 120 E E IF LE RVRDLRE RSG+L ++ATPP + ++P AL FL+ R+ V FD Sbjct: 74 TEIEPIFLNLRSLETRVRDLREGRSGVLRVLATPPLGHSVMPLALKRFLKTRQGVSVQFD 133 Query: 121 LRRYEGIIEGVTSRVAELGFVRGLSHHPGIAHEVVHTGEMVCVMPPKHPLAERPVISASD 180 +RR E +IE V + + F+ G+ HPGI V+ MV ++ HPLA +P ++A D Sbjct: 134 IRRMENVIEAVEAGTVDFAFLLGMQSHPGIDVTVMKVTPMVALLAKDHPLATKPFVTAGD 193 Query: 181 LV--GLPFIGLERGTRLGEAIRESFAQAGAPFQPTVEVRYCNTACVLAAAGVGAAVVDPF 238 G +GL+RG+RLG +R++F A AP++P VEVRYC++A VLA AG+G A+VD + Sbjct: 194 CAEHGHMGLGLDRGSRLGVLLRQAFEAANAPYRPAVEVRYCHSAAVLANAGLGIAIVDSY 253 Query: 239 SPRQGGSHDLVIKPFTPRTPAVAHMLWSEAEPLSRLAEAFLDEVRQ 284 +P DLV+KPFTP A +L + L RLA F+ EV Q Sbjct: 254 TPAMIAKMDLVVKPFTPSIQMNACLLTRKDTALPRLASDFVKEVSQ 299