BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0066.0039.p (440 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769981.1| ABC transporter substrate-binding protein [Brad... 646 0.0 ref|YP_001524931.1| ABC transporter substrate-binding protein [A... 596 e-168 ref|YP_001205061.1| putative ABC transporter periplasmic-binding... 591 e-167 ref|YP_001241025.1| putative ABC transporter periplasmic-binding... 587 e-165 ref|YP_001770727.1| extracellular solute-binding protein [Methyl... 561 e-158 >ref|NP_769981.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC48606.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum USDA 110] Length = 534 Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust. Identities = 317/360 (88%), Positives = 339/360 (94%) Query: 1 MDRRTLLKGLAGAGALAATGGVSMPALSQGAAARTLRFVPQANLANFDPIWGTQYVVRNA 60 MDRRT+LKGLAGA LA TGG+S PA++QGAAARTLRFVPQANLANFDPIWGTQYVVRNA Sbjct: 1 MDRRTVLKGLAGASGLALTGGLSAPAIAQGAAARTLRFVPQANLANFDPIWGTQYVVRNA 60 Query: 61 AALVWDTLYGVDAMLQPQPQMVESEEVTDDGLTWTFRLRSGLKFHDGEPVRSKDVIASIT 120 AALVWDTLYG+D+ LQPQ QMVESEEVTDDG TWTF+LR GLKFHDGEPV SKDV+AS+T Sbjct: 61 AALVWDTLYGIDSSLQPQRQMVESEEVTDDGTTWTFKLRPGLKFHDGEPVLSKDVVASLT 120 Query: 121 RWAARDPMGLMIKALQQELTAVDDRTFKLVLKQPYSKLLYALGKNNTPIAFIMPERIAQT 180 RW+ARDPMGLMIKALQQELTAVDDRTFK VLKQP+ KLLYAL KNN+P AFIMPERIAQT Sbjct: 121 RWSARDPMGLMIKALQQELTAVDDRTFKWVLKQPFPKLLYALAKNNSPCAFIMPERIAQT 180 Query: 181 DPFKQITDYVGSGPMKFAKAEWVPGAKAVFEKFTDYVPRQEKASWLAGGKQMLIDRLEWV 240 DPFKQITDYVGSGPMKFAK EWVPGAKAVFEKF DY PRQEKASWLAGGKQ+++DR+EW+ Sbjct: 181 DPFKQITDYVGSGPMKFAKGEWVPGAKAVFEKFADYAPRQEKASWLAGGKQIMVDRIEWI 240 Query: 241 VIPDPATAAAALQNGEVDWWESPITDLVPVLKSNRNISVDIADPLGNVGSFRMNHLYPPF 300 V+PDPATAAAALQNGEVDWWESPI DLVPVLK N+NISVDI DPLGNVGSFRMN LYPPF Sbjct: 241 VMPDPATAAAALQNGEVDWWESPIADLVPVLKKNKNISVDIGDPLGNVGSFRMNFLYPPF 300 Query: 301 NDVRARRAVLMAMSQEDYMRALVGDDTSLWKPLPGFFTPGTPLYSEAGGEILKGKRDLDA 360 NDVRARRAVLMAMSQEDYMRA+VGDDT+LWKPLPG+FTP TPLYSEAGGEILKGKRDLDA Sbjct: 301 NDVRARRAVLMAMSQEDYMRAIVGDDTALWKPLPGYFTPDTPLYSEAGGEILKGKRDLDA 360 >ref|YP_001524931.1| ABC transporter substrate-binding protein [Azorhizobium caulinodans ORS 571] dbj|BAF88013.1| ABC transporter substrate binding protein [Azorhizobium caulinodans ORS 571] Length = 533 Score = 596 bits (1536), Expect = e-168, Method: Compositional matrix adjust. Identities = 280/360 (77%), Positives = 323/360 (89%), Gaps = 1/360 (0%) Query: 1 MDRRTLLKGLAGAGALAATGGVSMPALSQGAAARTLRFVPQANLANFDPIWGTQYVVRNA 60 MDRRT LKG AGAG+LA +GG +MPAL+QGAA +TLRFVPQANLANFDPIWGTQYVVRNA Sbjct: 1 MDRRTFLKGAAGAGSLAMSGGFAMPALAQGAA-KTLRFVPQANLANFDPIWGTQYVVRNA 59 Query: 61 AALVWDTLYGVDAMLQPQPQMVESEEVTDDGLTWTFRLRSGLKFHDGEPVRSKDVIASIT 120 + LVWDTLYG+DA +PQ QMVESEEV+ DGLTWTF+LR GLKFHDGE V +KDV+AS+T Sbjct: 60 SVLVWDTLYGLDANQKPQRQMVESEEVSADGLTWTFKLRPGLKFHDGEKVLAKDVVASLT 119 Query: 121 RWAARDPMGLMIKALQQELTAVDDRTFKLVLKQPYSKLLYALGKNNTPIAFIMPERIAQT 180 RW+ARDPMG+M+K +Q+EL AVDD TF+ VL +PY K+L ALGK N PIAFIMPERIAQT Sbjct: 120 RWSARDPMGIMLKNIQKELVAVDDNTFRWVLSKPYPKMLLALGKTNAPIAFIMPERIAQT 179 Query: 181 DPFKQITDYVGSGPMKFAKAEWVPGAKAVFEKFTDYVPRQEKASWLAGGKQMLIDRLEWV 240 DPFKQIT+YVGSGP KF K EWVPGAKAVFE+F DYVPR E ASW++GGK+ML+DR+EWV Sbjct: 180 DPFKQITEYVGSGPTKFLKNEWVPGAKAVFERFADYVPRNEPASWISGGKKMLVDRIEWV 239 Query: 241 VIPDPATAAAALQNGEVDWWESPITDLVPVLKSNRNISVDIADPLGNVGSFRMNHLYPPF 300 V+PDPATAAAALQNGEVDWWE P++DLVP+LK N+N++VDI DPLGNVGSFRMNH+ PPF Sbjct: 240 VMPDPATAAAALQNGEVDWWEQPLSDLVPLLKKNKNLNVDIGDPLGNVGSFRMNHIQPPF 299 Query: 301 NDVRARRAVLMAMSQEDYMRALVGDDTSLWKPLPGFFTPGTPLYSEAGGEILKGKRDLDA 360 ++ + RRAVLMA+SQEDYMRA+VGDD +LWK LPGFFTPGTPLY+E GGEILKGKRDLDA Sbjct: 300 DNPKVRRAVLMALSQEDYMRAVVGDDEALWKTLPGFFTPGTPLYTEEGGEILKGKRDLDA 359 >ref|YP_001205061.1| putative ABC transporter periplasmic-binding protein oligopeptide/dipeptide ABC transporter [Bradyrhizobium sp. ORS 278] emb|CAL76824.1| putative ABC transporter periplasmic-binding protein; putative oligopeptide/dipeptide ABC transporter [Bradyrhizobium sp. ORS 278] Length = 533 Score = 591 bits (1524), Expect = e-167, Method: Compositional matrix adjust. Identities = 287/360 (79%), Positives = 325/360 (90%), Gaps = 1/360 (0%) Query: 1 MDRRTLLKGLAGAGALAATGGVSMPALSQGAAARTLRFVPQANLANFDPIWGTQYVVRNA 60 MDRRT+LKGLAGAG LA TG + PA++QGA ARTLRFVPQANLANFDPIWGTQYVVRNA Sbjct: 1 MDRRTVLKGLAGAGGLALTG-FAAPAIAQGANARTLRFVPQANLANFDPIWGTQYVVRNA 59 Query: 61 AALVWDTLYGVDAMLQPQPQMVESEEVTDDGLTWTFRLRSGLKFHDGEPVRSKDVIASIT 120 AA+VWDTLYG+D PQ QMVESEEV+ DGLTWTF+LR GLKFHDGEPV +KDV+AS+T Sbjct: 60 AAMVWDTLYGIDDKFVPQRQMVESEEVSSDGLTWTFKLRPGLKFHDGEPVLAKDVVASLT 119 Query: 121 RWAARDPMGLMIKALQQELTAVDDRTFKLVLKQPYSKLLYALGKNNTPIAFIMPERIAQT 180 RW+ARDPMGLM+KA+Q ELT VDD+TFK VLKQPY K+L+ALGK N P AF+MPERIAQT Sbjct: 120 RWSARDPMGLMLKAIQNELTPVDDKTFKWVLKQPYPKMLFALGKGNAPCAFVMPERIAQT 179 Query: 181 DPFKQITDYVGSGPMKFAKAEWVPGAKAVFEKFTDYVPRQEKASWLAGGKQMLIDRLEWV 240 DPFKQ+++YVGSGP KFAK EWVPGAKAVFEKF DYVPR EK WLAGGK++L+DR+EWV Sbjct: 180 DPFKQMSEYVGSGPFKFAKGEWVPGAKAVFEKFADYVPRDEKPVWLAGGKKVLVDRVEWV 239 Query: 241 VIPDPATAAAALQNGEVDWWESPITDLVPVLKSNRNISVDIADPLGNVGSFRMNHLYPPF 300 ++PDPATAAAALQNGEVDWWE+PITDLVPVLK N+NI VDI DPLGNVGSFRMNHL+ PF Sbjct: 240 IMPDPATAAAALQNGEVDWWENPITDLVPVLKGNKNIGVDIGDPLGNVGSFRMNHLHAPF 299 Query: 301 NDVRARRAVLMAMSQEDYMRALVGDDTSLWKPLPGFFTPGTPLYSEAGGEILKGKRDLDA 360 N+V+AR+A+LMA+SQEDYMRALVGD+ +LWKPLPGFFTP TPLY+EAGGEILKGKRD A Sbjct: 300 NNVKARQAILMALSQEDYMRALVGDENALWKPLPGFFTPDTPLYTEAGGEILKGKRDFAA 359 >ref|YP_001241025.1| putative ABC transporter periplasmic-binding protein [Bradyrhizobium sp. BTAi1] gb|ABQ37119.1| putative ABC transporter periplasmic-binding protein [Bradyrhizobium sp. BTAi1] Length = 534 Score = 587 bits (1513), Expect = e-165, Method: Compositional matrix adjust. Identities = 297/360 (82%), Positives = 330/360 (91%) Query: 1 MDRRTLLKGLAGAGALAATGGVSMPALSQGAAARTLRFVPQANLANFDPIWGTQYVVRNA 60 MDRRT+LKGLAGAG LA TGG + PA++QGAAARTLRFVPQANLANFDPIWGTQYVVRNA Sbjct: 1 MDRRTVLKGLAGAGGLALTGGFAAPAIAQGAAARTLRFVPQANLANFDPIWGTQYVVRNA 60 Query: 61 AALVWDTLYGVDAMLQPQPQMVESEEVTDDGLTWTFRLRSGLKFHDGEPVRSKDVIASIT 120 AA+VWDTLYG+D PQ QMVESEEV+ DGLTWTF+LR GLKFHDG PV +KDV+AS+T Sbjct: 61 AAMVWDTLYGIDDQFVPQRQMVESEEVSSDGLTWTFKLRPGLKFHDGTPVLAKDVVASLT 120 Query: 121 RWAARDPMGLMIKALQQELTAVDDRTFKLVLKQPYSKLLYALGKNNTPIAFIMPERIAQT 180 RW+ARDPMGLM+KALQ ELTAVDD+TFK VLKQPY K+L+ALGK N P AFIMPERIAQT Sbjct: 121 RWSARDPMGLMLKALQNELTAVDDKTFKWVLKQPYPKMLFALGKGNAPCAFIMPERIAQT 180 Query: 181 DPFKQITDYVGSGPMKFAKAEWVPGAKAVFEKFTDYVPRQEKASWLAGGKQMLIDRLEWV 240 DPFKQ+T+YVGSGP KF K EWVPGAKAVFEKFTDYVPRQEK WLAGGKQ+L+DR+EWV Sbjct: 181 DPFKQMTEYVGSGPFKFVKGEWVPGAKAVFEKFTDYVPRQEKPVWLAGGKQVLVDRVEWV 240 Query: 241 VIPDPATAAAALQNGEVDWWESPITDLVPVLKSNRNISVDIADPLGNVGSFRMNHLYPPF 300 ++PDPATAAAALQNGEVDWWE+PITDLVPVLK N+NI VDI DPLGNVG+FR+NHL+ PF Sbjct: 241 IMPDPATAAAALQNGEVDWWENPITDLVPVLKGNKNIGVDIGDPLGNVGAFRINHLHAPF 300 Query: 301 NDVRARRAVLMAMSQEDYMRALVGDDTSLWKPLPGFFTPGTPLYSEAGGEILKGKRDLDA 360 N+V+AR+A+LMAMSQEDYMRALVGDD SLWKPLPGFFTPGTPLY+EAGGEILKGKRDL A Sbjct: 301 NNVKARQAILMAMSQEDYMRALVGDDNSLWKPLPGFFTPGTPLYTEAGGEILKGKRDLVA 360 >ref|YP_001770727.1| extracellular solute-binding protein [Methylobacterium sp. 4-46] gb|ACA18293.1| extracellular solute-binding protein family 5 [Methylobacterium sp. 4-46] Length = 533 Score = 561 bits (1446), Expect = e-158, Method: Compositional matrix adjust. Identities = 277/368 (75%), Positives = 321/368 (87%), Gaps = 4/368 (1%) Query: 1 MDRRTLLKGLAGAGALAATGGVSMPALSQGAAARTLRFVPQANLANFDPIWGTQYVVRNA 60 MDRR+LLK +AGAGALAA PAL+QGAA +TLRFVPQANLANFDPIWGTQYVVRNA Sbjct: 1 MDRRSLLKAMAGAGALAAGPSFPAPALAQGAA-KTLRFVPQANLANFDPIWGTQYVVRNA 59 Query: 61 AALVWDTLYGVDAMLQPQPQMVESEEVTDDGLTWTFRLRSGLKFHDGEPVRSKDVIASIT 120 AALVWDTLYGVDA L+PQ QMVESE V+ DGLTWTF LR GLKFHDGEPVR++D +AS+ Sbjct: 60 AALVWDTLYGVDAQLRPQRQMVESETVSSDGLTWTFTLRPGLKFHDGEPVRARDAVASLV 119 Query: 121 RWAARDPMGLMIKALQQELTAVDDRTFKLVLKQPYSKLLYALGKNNTPIAFIMPERIAQT 180 RW+ARDPMGLMI+A+Q EL+AVDDR+F+ VL +PY K+L AL KNN P +F+MPERIAQT Sbjct: 120 RWSARDPMGLMIRAIQAELSAVDDRSFRWVLTKPYPKMLLALAKNNAPCSFVMPERIAQT 179 Query: 181 DPFKQITDYVGSGPMKFAKAEWVPGAKAVFEKFTDYVPRQEKASWLAGGKQMLIDRLEWV 240 DPFKQIT+YVGSGPM+FA+ EWVPGA+AVF +F DYVPRQE ASWLAGGKQ+ DR+EW+ Sbjct: 180 DPFKQITEYVGSGPMRFARDEWVPGARAVFTRFADYVPRQEPASWLAGGKQIAFDRVEWI 239 Query: 241 VIPDPATAAAALQNGEVDWWESPITDLVPVLKSNRNISVDIADPLGNVGSFRMNHLYPPF 300 ++PDPA+A+AALQNGEVDWWE+PI DLVP+LK NRNI VDIADPLGNVGSFRMN L+PPF Sbjct: 240 IMPDPASASAALQNGEVDWWENPIADLVPLLKKNRNIQVDIADPLGNVGSFRMNTLHPPF 299 Query: 301 NDVRARRAVLMAMSQEDYMRALVGDDTSLWKPLPGFFTPGTPLYSEAGGEILKGKRDLDA 360 N+ RRAVLMAM+QEDYMRA+VGDD +LWKPLPG+FTPGTPLY+E GGE++K DL Sbjct: 300 NNQLVRRAVLMAMNQEDYMRAIVGDDDALWKPLPGYFTPGTPLYNEEGGEVVKPGGDL-- 357 Query: 361 XAAGRERL 368 AA R+ L Sbjct: 358 -AAARKLL 364