BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0066.0028.p (415 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CAZ87867.1| putative ABC-type branched-chain amino acid tran... 355 8e-96 ref|YP_003642644.1| Extracellular ligand-binding receptor [Thiom... 353 3e-95 ref|YP_001235322.1| extracellular ligand-binding receptor [Acidi... 345 8e-93 ref|YP_004720358.1| extracellular ligand-binding receptor [Sulfo... 336 3e-90 ref|YP_003109402.1| extracellular ligand-binding receptor [Acidi... 313 4e-83 >emb|CAZ87867.1| putative ABC-type branched-chain amino acid transport system, periplasmic component [Thiomonas sp. 3As] Length = 415 Score = 355 bits (911), Expect = 8e-96, Method: Compositional matrix adjust. Identities = 196/416 (47%), Positives = 268/416 (64%), Gaps = 12/416 (2%) Query: 1 MLRIIGAALAASLAFATQAMAADAPSEIKIGTLYASSGRYASISMPVYSSLKLWVEQKNA 60 +LR + A LA S A A AA APS+IKIGTLYASSG +A S Y LK W + N Sbjct: 9 ILRHLAAGLALSAT-AVAAHAAAAPSQIKIGTLYASSGPFAVASQGQYEGLKYWADAINK 67 Query: 61 EGGVFVKAFDKNIPIKLVSYDDQSNTATASTLYNQLVTQDKVDLLVADSGSVLTAPAVAI 120 EGGVFVKAF+K IP+KLV+YDDQS+T+TA+TLYNQL+TQDKVD+LVAD GSVLT+ AV + Sbjct: 68 EGGVFVKAFNKKIPVKLVAYDDQSSTSTATTLYNQLITQDKVDVLVADFGSVLTSVAVPL 127 Query: 121 ARDHKMFLFDQTGTGASFFSKDNPYIALMADPVSTVWPKPVADFISHDGPGLGIKKVAIL 180 A +H M L D TG+GA+FF+K Y+A ++ P STVWP P+A+++ IK+VAI+ Sbjct: 128 AAEHHMLLIDPTGSGANFFTKPTNYLADVSIPSSTVWPVPLANYLVQQ----KIKRVAIV 183 Query: 181 YSTNEFTGTQANAFRKFVKESGAPIEIVYDQGVPTETTNYNVIINNISNANPDAVIHFGY 240 YS N+F +QA + + ++G I+ VYD GVPT +NY ++++ I+ P+AV+ FGY Sbjct: 184 YSANDFDASQAATLKDVLAKAG--IKPVYDHGVPTSESNYTILLHTIAATQPEAVLEFGY 241 Query: 241 APNDIAFLRNVQDVGTKFKMLFAIYAGLETELLEKNVGAKGLEHIWTYVPPSELDY-PVN 299 APNDIAFL+ + G F M F I+ G LL KNVG K L + +TY P + Y V+ Sbjct: 242 APNDIAFLKALHQSGLHFPMTFTIFPGQLLSLLTKNVGEKALAYTYTYPTPPLVKYDKVS 301 Query: 300 FGMNMKDFRAAWTKKYNDGKMEFGFNAVAGYTTALVIEKTLSVATSLDQMELRRAVFSLS 359 +GMN + F A+ K E F +GY T L+++ L +A DQ+ +AV +S Sbjct: 302 YGMNTQQFVDAFKAAM---KKEPNFLDCSGYNTGLIVQHMLDMAPKFDQLAFHQAVMDMS 358 Query: 360 GQLKTLDGTFALDETGGQIGELTPLGQLTVDEHDHIKFVSIYPHETATGKPIYPAP 415 G+ TL G F ++ G Q+G+ P+ QL + + V +YP + ATGK +YPAP Sbjct: 359 GKTTTLLGPFDVNANGAQLGQPFPVAQLQPKD-GKLDVVVVYPQDKATGKAVYPAP 413 >ref|YP_003642644.1| Extracellular ligand-binding receptor [Thiomonas intermedia K12] gb|ADG30314.1| Extracellular ligand-binding receptor [Thiomonas intermedia K12] Length = 415 Score = 353 bits (907), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 196/416 (47%), Positives = 266/416 (63%), Gaps = 12/416 (2%) Query: 1 MLRIIGAALAASLAFATQAMAADAPSEIKIGTLYASSGRYASISMPVYSSLKLWVEQKNA 60 +LR A LA S A A AA APS+IKIGTLYASSG +A S Y LK W + N Sbjct: 9 ILRHFAAGLALSAT-AVAAHAAAAPSQIKIGTLYASSGPFAVASQGQYEGLKYWADAINK 67 Query: 61 EGGVFVKAFDKNIPIKLVSYDDQSNTATASTLYNQLVTQDKVDLLVADSGSVLTAPAVAI 120 EGGVFVKAF+K IP+KLV+YDDQS+T+TA+TLYNQL+TQDKVD+LVAD GSVLT+ AV + Sbjct: 68 EGGVFVKAFNKKIPVKLVAYDDQSSTSTATTLYNQLITQDKVDVLVADFGSVLTSVAVPL 127 Query: 121 ARDHKMFLFDQTGTGASFFSKDNPYIALMADPVSTVWPKPVADFISHDGPGLGIKKVAIL 180 A +H M L D TG+GA+FF+K Y+A ++ P STVWP P+A+++ IK+VAI+ Sbjct: 128 AAEHHMLLIDPTGSGANFFTKPTNYLADVSIPSSTVWPVPLANYLVQQ----KIKRVAIV 183 Query: 181 YSTNEFTGTQANAFRKFVKESGAPIEIVYDQGVPTETTNYNVIINNISNANPDAVIHFGY 240 YS N+F +QA + + ++G I+ VYD GVPT +NY ++++ I+ P+AV+ FGY Sbjct: 184 YSANDFDASQAATLKDVLAKAG--IKPVYDHGVPTSESNYTILLHTIAATQPEAVLEFGY 241 Query: 241 APNDIAFLRNVQDVGTKFKMLFAIYAGLETELLEKNVGAKGLEHIWTYVPPSELDY-PVN 299 APNDIAFL+ + G F M F I+ G LL KNVG K L + +TY P + Y V+ Sbjct: 242 APNDIAFLKALHQSGLHFPMTFTIFPGQLLSLLTKNVGEKALAYTYTYPTPPLVKYDKVS 301 Query: 300 FGMNMKDFRAAWTKKYNDGKMEFGFNAVAGYTTALVIEKTLSVATSLDQMELRRAVFSLS 359 +GMN + F A+ K E F +GY T L+++ L A DQ+ +AV +S Sbjct: 302 YGMNTQQFVDAFKAAM---KKEPNFLDCSGYNTGLIVQHMLDTAPKFDQLAFHQAVMDMS 358 Query: 360 GQLKTLDGTFALDETGGQIGELTPLGQLTVDEHDHIKFVSIYPHETATGKPIYPAP 415 G+ TL G F ++ G Q+G+ P+ QL + + V +YP + ATGK +YPAP Sbjct: 359 GKTTTLLGPFDVNANGAQLGQPFPVAQLQPKD-GKLDVVVVYPQDKATGKAVYPAP 413 >ref|YP_001235322.1| extracellular ligand-binding receptor [Acidiphilium cryptum JF-5] ref|YP_004284680.1| putative ABC transporter substrate-binding protein [Acidiphilium multivorum AIU301] ref|ZP_08632341.1| Extracellular ligand-binding receptor [Acidiphilium sp. PM] gb|ABQ31403.1| amino acid/amide ABC transporter substrate-binding protein, HAAT family [Acidiphilium cryptum JF-5] dbj|BAJ81798.1| putative ABC transporter substrate-binding protein [Acidiphilium multivorum AIU301] gb|EGO95875.1| Extracellular ligand-binding receptor [Acidiphilium sp. PM] Length = 418 Score = 345 bits (885), Expect = 8e-93, Method: Compositional matrix adjust. Identities = 190/411 (46%), Positives = 256/411 (62%), Gaps = 15/411 (3%) Query: 9 LAASLAFAT--QAMAADAPSEIKIGTLYASSGRYASISMPVYSSLKLWVEQKNAEGGVFV 66 LA+ LA A QA AA APS +KIGTLYASSG +A S Y L+ W + N GGVFV Sbjct: 17 LASGLALAGIGQASAATAPSVLKIGTLYASSGSFAVASEGQYHGLEYWAKTVNKSGGVFV 76 Query: 67 KAFDKNIPIKLVSYDDQSNTATASTLYNQLVTQDKVDLLVADSGSVLTAPAVAIARDHKM 126 KAFDK IP+K+V+YDDQS+TATA+TLYNQL+TQD V+LLVAD GSVLT+ A+ +A +H M Sbjct: 77 KAFDKKIPVKIVAYDDQSSTATATTLYNQLITQDHVNLLVADFGSVLTSVAIPLAAEHHM 136 Query: 127 FLFDQTGTGASFFSKDNPYIALMADPVSTVWPKPVADF-ISHDGPGLGIKKVAILYSTNE 185 L D TG+GA+FF+K Y+A ++ P STVWP P+ F + H IK+VA++Y +N+ Sbjct: 137 LLIDPTGSGANFFTKKTDYLADVSIPASTVWPLPLGHFLLDHK-----IKRVAVIYDSND 191 Query: 186 FTGTQANAFRKFVKESGAPIEIVYDQGVPTETTNYNVIINNISNANPDAVIHFGYAPNDI 245 F +QA + +K+ G + VY GVPT +NY V+++ I+ PDAVI FGY PNDI Sbjct: 192 FDASQAETLKATLKKGG--VTPVYYHGVPTSESNYTVLLHTIAAHRPDAVIEFGYPPNDI 249 Query: 246 AFLRNVQDVGTKFKMLFAIYAGLETELLEKNVGAKGLEHIWTYVPPSELDYP-VNFGMNM 304 AFL + G FKM F I+ G L+ KNVGAK L + +TY P + + +G N Sbjct: 250 AFLHTLAGSGLHFKMTFTIFPGQLLALMTKNVGAKTLAYTYTYPTPPLVSFAKTTYGPNT 309 Query: 305 KDFRAAWTKKYNDGKMEFGFNAVAGYTTALVIEKTLSVATSLDQMELRRAVFSLSGQLKT 364 F +T ++ F AGY T L+++ L A Q+ +A+ +SG+ T Sbjct: 310 ATFVKEFTAATHNAP---NFLDAAGYNTGLIMQDMLGTAPKFTQLAFHQALMDMSGKTTT 366 Query: 365 LDGTFALDETGGQIGELTPLGQLTVDEHDHIKFVSIYPHETATGKPIYPAP 415 + G F ++ G Q+GEL P+ QL V K V +YP + ATGKP+YPAP Sbjct: 367 VLGQFKINANGAQLGELLPVAQL-VPAGKTNKIVVVYPQDKATGKPVYPAP 416 >ref|YP_004720358.1| extracellular ligand-binding receptor [Sulfobacillus acidophilus TPY] gb|AEJ40615.1| Extracellular ligand-binding receptor [Sulfobacillus acidophilus TPY] Length = 369 Score = 336 bits (862), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 178/375 (47%), Positives = 246/375 (65%), Gaps = 11/375 (2%) Query: 30 IGTLYASSGRYASISMPVYSSLKLWVEQKNAEGGVFVKAFDKNIPIKLVSYDDQSNTATA 89 +GTLYA SG YA+ S+P Y+ LK W+ Q N++GGV+V A+ K I ++LVSY+DQS+ TA Sbjct: 1 MGTLYAGSGSYATSSLPEYAGLKFWINQVNSQGGVYVNAYHKRIKVQLVSYNDQSSPTTA 60 Query: 90 STLYNQLVTQDKVDLLVADSGSVLTAPAVAIARDHKMFLFDQTGTGASFFSKDNPYIALM 149 + LYNQL+T + V++LVAD GSVLT+ AV +A ++KM LFDQTGTGASFFS +NPYI L Sbjct: 61 TNLYNQLITVNHVNILVADFGSVLTSVAVPLAEENKMLLFDQTGTGASFFSPNNPYIVLT 120 Query: 150 ADPVSTVWPKPVADFISHDGPGLGIKKVAILYSTNEFTGTQANAFRKFVKESGAPIEIVY 209 + P S +WP +A ++ G K VAI+Y TN+F +Q +K +G I VY Sbjct: 121 SLPTSGLWPDSLAQYLIQSGK----KHVAIVYDTNDFDQSQDTTLVTKLKAAG--INPVY 174 Query: 210 DQGVPTETTNYNVIINNISNANPDAVIHFGYAPNDIAFLRNVQDVGTKFKMLFAIYAGLE 269 + GV T T+NY VI+++I+ NPDAVI GY NDIAFL+ ++ F M+F I+ G Sbjct: 175 NNGVATSTSNYTVILHDIAATNPDAVIELGYPNNDIAFLQALKSSSDHFPMVFTIFPGQL 234 Query: 270 TELLEKNV-GAKGLEHIWTYVPPSELDYP-VNFGMNMKDFRAAWTKKYNDGKMEFGFNAV 327 +L E N GA GL ++TY P L+ P VN+G+++ F A+ K F +V Sbjct: 235 PQLFESNFGGAAGLAGLYTYPAPPLLNRPQVNYGLSLAQFETAYQKSTGQSA---NFLSV 291 Query: 328 AGYTTALVIEKTLSVATSLDQMELRRAVFSLSGQLKTLDGTFALDETGGQIGELTPLGQL 387 AGY T LVI+KTL ATSL Q+ LR+AV S SG++ TLDGTF ++ G QIGE P+GQ Sbjct: 292 AGYNTGLVIQKTLGTATSLSQLGLRQAVSSFSGKISTLDGTFQINNEGAQIGETLPVGQF 351 Query: 388 TVDEHDHIKFVSIYP 402 +V + +++ + P Sbjct: 352 SVGSNGNLEVNLVTP 366 >ref|YP_003109402.1| extracellular ligand-binding receptor [Acidimicrobium ferrooxidans DSM 10331] gb|ACU53729.1| extracellular ligand-binding receptor [Acidimicrobium ferrooxidans DSM 10331] Length = 429 Score = 313 bits (801), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 170/390 (43%), Positives = 232/390 (59%), Gaps = 10/390 (2%) Query: 27 EIKIGTLYASSGRYASISMPVYSSLKLWVEQKNAEGGVFVKAFDKNIPIKLVSYDDQSNT 86 +I +GT YASSG YA+ S+P LKLWV +NA+GGV+V A+ K IP+KL++ +DQSN Sbjct: 49 QITVGTTYASSGEYATSSIPELDGLKLWVSLENAKGGVYVGAYHKRIPVKLIALNDQSNP 108 Query: 87 ATASTLYNQLVTQDKVDLLVADSGSVLTAPAVAIARDHKMFLFDQTGTGASFFSKDNPYI 146 +TA L NQL+TQDKV++LVAD GSVLTAPAV+IA+ H LFDQ+GTG FF+ NPYI Sbjct: 109 STAGVLTNQLITQDKVNILVADFGSVLTAPAVSIAQAHHYLLFDQSGTGIPFFTPGNPYI 168 Query: 147 ALMADPVSTVWPKPVADFISHDGPGLGIKKVAILYSTNEFTGTQANAFRKFVKESGAPIE 206 L PVS++WP P+A+FI I VAI+Y N+F G+QA + K + A + Sbjct: 169 VLCDLPVSSIWPDPLANFIISK----HINNVAIVYGGNDFDGSQAETLK--AKLTAAHVS 222 Query: 207 IVYDQGVPTETTNYNVIINNISNANPDAVIHFGYAPNDIAFLRNVQDVGTKFKMLFAIYA 266 + + VPT TT+Y+ II++++ P AV+ GY PND AFL+ ++ G F M+F ++ Sbjct: 223 LAAYEEVPTSTTSYSTIISSLAAKKPGAVLELGYQPNDTAFLQQLESSGDHFPMVFTVFP 282 Query: 267 GLETELLEKNVGAKGLEHIWTYVPPSELDY-PVNFGMNMKDFRAAWTKKYNDGKMEFGFN 325 G L E +G GL++ +TY Y V G+ F A Y G Sbjct: 283 GQLLSLFESQLGKTGLQYTYTYGTNFYNTYNSVTEGLTTSAFMAKLQSTYPSAVNTLG-- 340 Query: 326 AVAGYTTALVIEKTLSVATSLDQMELRRAVFSLSGQLKTLDGTFALDETGGQIGELTPLG 385 + GY T LV+E L ATSL Q+ LR A+ S+SG L T+DGTF ++ G Q GEL PL Sbjct: 341 -LLGYNTGLVVEAALRHATSLSQLALRNALTSVSGNLTTVDGTFQINSEGAQTGELLPLA 399 Query: 386 QLTVDEHDHIKFVSIYPHETATGKPIYPAP 415 QL + + + +YPAP Sbjct: 400 QLFPGSGNTVALKPVTSPAPNPVSAVYPAP 429