BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0066.0011.p (177 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769611.1| transcriptional regulator [Bradyrhizobium japon... 244 3e-63 ref|YP_001204652.1| homoprotocatechuate degradative operon repre... 218 4e-55 ref|NP_949094.1| MarR family transcriptional regulator [Rhodopse... 215 2e-54 ref|YP_570712.1| homoprotocatechuate degradation transcriptional... 215 3e-54 ref|YP_001993249.1| MarR family transcriptional regulator [Rhodo... 214 4e-54 >ref|NP_769611.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC48236.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 172 Score = 244 bits (624), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 124/164 (75%), Positives = 138/164 (84%) Query: 11 PGQGDDAAARRTPMREFSRSLPMSLLRAREAVMRQFRPSLRNHGLTEQQWRILRALTAVD 70 P AAR+ PMR+FSRSLPMSLLRAREAVMRQFRPSLR HGLTEQQWRILRAL A+D Sbjct: 8 PANASAPAARQVPMRDFSRSLPMSLLRAREAVMRQFRPSLREHGLTEQQWRILRALAAID 67 Query: 71 EIEVTELAHMAFLLGPSLSRILRDLEGRALIERKAAENDARRAVVSISAKGLKLIEAVAP 130 EVTELA AFLLGPSLSRILRDLE R LIERK A+ D RR++VSIS +G+KL+ +VAP Sbjct: 68 AAEVTELARTAFLLGPSLSRILRDLEARNLIERKTAKADQRRSMVSISKEGVKLMASVAP 127 Query: 131 TSEAIYAEITRRFGARKLAELQEMLGALEASLAGMGSADDAEVE 174 TSEAIYAEIT RFGARKLAELQEMLG LE SLAG+G+ ++A E Sbjct: 128 TSEAIYAEITSRFGARKLAELQEMLGELEQSLAGLGAGNEASAE 171 >ref|YP_001204652.1| homoprotocatechuate degradative operon repressor [Bradyrhizobium sp. ORS 278] emb|CAL76415.1| putative homoprotocatechuate degradative operon repressor, transcriptional regulatory protein MarR family, HpcR-like [Bradyrhizobium sp. ORS 278] Length = 168 Score = 218 bits (554), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 114/160 (71%), Positives = 127/160 (79%), Gaps = 3/160 (1%) Query: 7 SDIRPGQGDDAAARRTPMREFSRSLPMSLLRAREAVMRQFRPSLRNHGLTEQQWRILRAL 66 SD + G D AR+ PMR+FS+SLPM+LLRAREAVMRQFRP+LR HGLTEQQWRILRAL Sbjct: 4 SDSKKGFKD---ARKVPMRDFSQSLPMALLRAREAVMRQFRPNLRAHGLTEQQWRILRAL 60 Query: 67 TAVDEIEVTELAHMAFLLGPSLSRILRDLEGRALIERKAAENDARRAVVSISAKGLKLIE 126 AVD IEVTELA +AFLLGPSLSRILRDLE R LI+R+ D RR V+SIS KGLKLI Sbjct: 61 AAVDAIEVTELARVAFLLGPSLSRILRDLEARGLIQREVDARDMRRGVLSISTKGLKLIA 120 Query: 127 AVAPTSEAIYAEITRRFGARKLAELQEMLGALEASLAGMG 166 VAP SEAIYA I RR+GARKLA L +ML LE S+ G G Sbjct: 121 QVAPNSEAIYASIARRYGARKLAALHKMLDELEQSIGGDG 160 >ref|NP_949094.1| MarR family transcriptional regulator [Rhodopseudomonas palustris CGA009] emb|CAE29198.1| transcriptional regulator, MarR family [Rhodopseudomonas palustris CGA009] Length = 179 Score = 215 bits (548), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 115/157 (73%), Positives = 128/157 (81%), Gaps = 5/157 (3%) Query: 24 MREFSRSLPMSLLRAREAVMRQFRPSLRNHGLTEQQWRILRALTAVDEIEVTELAHMAFL 83 MREFSRSLPM LLR REAVMR FRP LR HGL+EQQWRILRALTAVD IEVTELAH AFL Sbjct: 1 MREFSRSLPMLLLRGREAVMRHFRPLLRAHGLSEQQWRILRALTAVDAIEVTELAHSAFL 60 Query: 84 LGPSLSRILRDLEGRALIERKAAENDARRAVVSISAKGLKLIEAVAPTSEAIYAEITRRF 143 LGPSLSR+LRDLE R L+ RK A++D RR++VSI+ KGLKLIE VAP SEAIYAEITRR Sbjct: 61 LGPSLSRMLRDLEARKLVARKLAKDDQRRSMVSITPKGLKLIETVAPFSEAIYAEITRRT 120 Query: 144 GARKLAELQEMLGALEASLAGM-----GSADDAEVEA 175 G +LAELQE+L ALEASL M GS D++ E+ Sbjct: 121 GGARLAELQELLRALEASLMAMPVRHAGSVVDSDQES 157 >ref|YP_570712.1| homoprotocatechuate degradation transcriptional regulator HpaR [Rhodopseudomonas palustris BisB5] gb|ABE40811.1| transcriptional regulator, MarR family [Rhodopseudomonas palustris BisB5] Length = 164 Score = 215 bits (547), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 109/142 (76%), Positives = 122/142 (85%) Query: 24 MREFSRSLPMSLLRAREAVMRQFRPSLRNHGLTEQQWRILRALTAVDEIEVTELAHMAFL 83 MR+FSRSLPM LLR+REAVMRQFRP LR HGL+EQQWRILRALTAVD EVTELAH A+L Sbjct: 1 MRDFSRSLPMQLLRSREAVMRQFRPLLRAHGLSEQQWRILRALTAVDTTEVTELAHSAYL 60 Query: 84 LGPSLSRILRDLEGRALIERKAAENDARRAVVSISAKGLKLIEAVAPTSEAIYAEITRRF 143 LGPSLSRILRDLE R LI RK +++D RR++VSI+ KGL LI AVAP SEAIYAEI RR+ Sbjct: 61 LGPSLSRILRDLEARKLIARKPSKDDQRRSMVSITRKGLTLIAAVAPFSEAIYAEIARRY 120 Query: 144 GARKLAELQEMLGALEASLAGM 165 GA KLAELQEML LEASL+ + Sbjct: 121 GAAKLAELQEMLRVLEASLSAL 142 >ref|YP_001993249.1| MarR family transcriptional regulator [Rhodopseudomonas palustris TIE-1] gb|ACF02774.1| transcriptional regulator, MarR family [Rhodopseudomonas palustris TIE-1] Length = 179 Score = 214 bits (545), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 114/157 (72%), Positives = 128/157 (81%), Gaps = 5/157 (3%) Query: 24 MREFSRSLPMSLLRAREAVMRQFRPSLRNHGLTEQQWRILRALTAVDEIEVTELAHMAFL 83 MREFSRSLPM LLR REAVMR FRP LR HGL+EQQWRILRALTAVD +EVTELAH AFL Sbjct: 1 MREFSRSLPMLLLRGREAVMRHFRPLLRAHGLSEQQWRILRALTAVDALEVTELAHSAFL 60 Query: 84 LGPSLSRILRDLEGRALIERKAAENDARRAVVSISAKGLKLIEAVAPTSEAIYAEITRRF 143 LGPSLSR+LRDLE R L+ RK A++D RR++VSI+ KGLKLIE VAP SEAIYAEITRR Sbjct: 61 LGPSLSRMLRDLEARKLVARKLAKDDQRRSMVSITPKGLKLIETVAPFSEAIYAEITRRT 120 Query: 144 GARKLAELQEMLGALEASLAGM-----GSADDAEVEA 175 G +LAELQE+L ALEASL M GS D++ E+ Sbjct: 121 GGARLAELQELLRALEASLMAMPVRHAGSVVDSDQES 157