BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0066.0009.p (381 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_531573.1| extracellular ligand-binding receptor [Rhodopse... 647 0.0 ref|ZP_08629164.1| branched-chain amino acid ABC transporter, am... 632 e-179 ref|YP_002501659.1| extracellular ligand-binding receptor [Methy... 573 e-161 ref|YP_001773181.1| extracellular ligand-binding receptor [Methy... 568 e-160 ref|YP_001766750.1| extracellular ligand-binding receptor [Methy... 560 e-157 >ref|YP_531573.1| extracellular ligand-binding receptor [Rhodopseudomonas palustris BisB18] gb|ABD87254.1| Extracellular ligand-binding receptor [Rhodopseudomonas palustris BisB18] Length = 381 Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust. Identities = 309/381 (81%), Positives = 345/381 (90%) Query: 1 MKLTRREFSAGLAAGLAAPALMRSAWAQGATIKIGMCVPVTGPAAEQGLWAQNGAKLALA 60 M LTRRE +AGLA GL AP L+ A AQGATIKIGMC PVTGPAAE G +A GAKLAL Sbjct: 1 MTLTRREVAAGLAVGLTAPYLIGRARAQGATIKIGMCAPVTGPAAESGGYAVKGAKLALE 60 Query: 61 AVNKAGGVLGKQVELVIEDDQTTNPGIVLAFSKLAAQSDIVAFLGSIRSTQVQAMAPDVI 120 AVNKAGGVLGKQ+EL++EDDQTTNPGIVLAFSKLAAQ DIV FLGSIRSTQV AMAPDV+ Sbjct: 61 AVNKAGGVLGKQLELIVEDDQTTNPGIVLAFSKLAAQPDIVGFLGSIRSTQVHAMAPDVM 120 Query: 121 KVGKPVMIGGTNPDLTHSGNPWLFRFRPNDNYSGRVIADFGVNTLGKKKWAIVHSTDAFG 180 K+GKPVM GGT+P+LT GNPWLFRFRPND+YSGRVIAD+GVNTLGKKKWA++HSTDAFG Sbjct: 121 KLGKPVMFGGTDPNLTKLGNPWLFRFRPNDSYSGRVIADYGVNTLGKKKWAVLHSTDAFG 180 Query: 181 TAGGKALTEALTKLGAPPVLDQGYANQSQDFTPVVLAVKQSGADVLGTYFTFENDLGIFA 240 TAGGKAL+EAL KLGAPPVLDQGYANQSQDFTPVVLA+K SGAD+LG+YFTFENDLGIFA Sbjct: 181 TAGGKALSEALNKLGAPPVLDQGYANQSQDFTPVVLAIKSSGADILGSYFTFENDLGIFA 240 Query: 241 RQLRQLGVNIPWVGSPSVVAVSSTKLAGPALFNTYGVADFAEDSSDAAKAFGKAYRDAYK 300 RQLRQLGV IPWVGSPS+V +++ KLAGPAL+ TYGVAD+AE+SS+AAKAFGK YRDA K Sbjct: 241 RQLRQLGVTIPWVGSPSIVNITALKLAGPALYGTYGVADYAEESSEAAKAFGKLYRDAVK 300 Query: 301 TAPDNQSAWPYDAITILSAAINKAGSTDPNKIRDAILATQKFAGAEGEYNFDKNGDGLHG 360 APDNQS+WP+DA+T+L+AAINKAGSTDP KIR+AIL +KF GAEGEYNFD GDGLHG Sbjct: 301 VAPDNQSSWPFDAVTVLAAAINKAGSTDPQKIREAILGIKKFPGAEGEYNFDDKGDGLHG 360 Query: 361 YNVVKNDKGKIVYDKHIDFND 381 YN+VKNDKGKIV+DKHI+F D Sbjct: 361 YNIVKNDKGKIVFDKHIEFTD 381 >ref|ZP_08629164.1| branched-chain amino acid ABC transporter, amino acid-binding protein [Bradyrhizobiaceae bacterium SG-6C] gb|EGP07657.1| branched-chain amino acid ABC transporter, amino acid-binding protein [Bradyrhizobiaceae bacterium SG-6C] Length = 381 Score = 632 bits (1629), Expect = e-179, Method: Compositional matrix adjust. Identities = 302/378 (79%), Positives = 343/378 (90%) Query: 1 MKLTRREFSAGLAAGLAAPALMRSAWAQGATIKIGMCVPVTGPAAEQGLWAQNGAKLALA 60 MKL+RR+FS G+AA LAAPAL++SA AQGATIKIGM +PVTG AAEQG +A NGAKLAL Sbjct: 1 MKLSRRDFSVGMAATLAAPALIKSAGAQGATIKIGMVLPVTGSAAEQGKFALNGAKLALE 60 Query: 61 AVNKAGGVLGKQVELVIEDDQTTNPGIVLAFSKLAAQSDIVAFLGSIRSTQVQAMAPDVI 120 AVNKAGGVLGKQ+EL+ EDDQTTNPG+VLAFSKLA+QSDIVAFLGSIRSTQV AMAPDV+ Sbjct: 61 AVNKAGGVLGKQLELITEDDQTTNPGVVLAFSKLASQSDIVAFLGSIRSTQVHAMAPDVL 120 Query: 121 KVGKPVMIGGTNPDLTHSGNPWLFRFRPNDNYSGRVIADFGVNTLGKKKWAIVHSTDAFG 180 K+GKPV IGGT+P+LTH GN WLFRFRPND+YSG VIAD+G NTLGKKKWA++HSTDAFG Sbjct: 121 KLGKPVAIGGTDPNLTHMGNKWLFRFRPNDSYSGSVIADYGTNTLGKKKWAVLHSTDAFG 180 Query: 181 TAGGKALTEALTKLGAPPVLDQGYANQSQDFTPVVLAVKQSGADVLGTYFTFENDLGIFA 240 TAGGKALTE L+KLG PVLDQGYANQSQDFTPVVLA+KQSGADVLG+YFTFENDLGIFA Sbjct: 181 TAGGKALTEGLSKLGITPVLDQGYANQSQDFTPVVLAIKQSGADVLGSYFTFENDLGIFA 240 Query: 241 RQLRQLGVNIPWVGSPSVVAVSSTKLAGPALFNTYGVADFAEDSSDAAKAFGKAYRDAYK 300 RQLRQLGVNIPWVGSPS+V VSST+LAG +L+ TYGVAD+AE+SS AKA+GKAYRDAYK Sbjct: 241 RQLRQLGVNIPWVGSPSIVGVSSTRLAGASLYGTYGVADYAEESSPTAKAYGKAYRDAYK 300 Query: 301 TAPDNQSAWPYDAITILSAAINKAGSTDPNKIRDAILATQKFAGAEGEYNFDKNGDGLHG 360 APDNQSAW YDAI +L+ A+N A ST+P KIR AILA + + GAEG+YNFD+NGDGLHG Sbjct: 301 LAPDNQSAWTYDAINVLAKAMNTAKSTEPEKIRAAILAIKGYEGAEGQYNFDENGDGLHG 360 Query: 361 YNVVKNDKGKIVYDKHID 378 YN+VKN+KG IV+DKHI+ Sbjct: 361 YNIVKNEKGTIVFDKHIE 378 >ref|YP_002501659.1| extracellular ligand-binding receptor [Methylobacterium nodulans ORS 2060] gb|ACL61356.1| Extracellular ligand-binding receptor [Methylobacterium nodulans ORS 2060] Length = 388 Score = 573 bits (1477), Expect = e-161, Method: Compositional matrix adjust. Identities = 276/385 (71%), Positives = 322/385 (83%), Gaps = 6/385 (1%) Query: 1 MKLTRREFSAGLAAG----LAAPALMRSAWAQGA--TIKIGMCVPVTGPAAEQGLWAQNG 54 M+ TRR F G A+ +A P L+RSA AQGA T++IGM +PVTGP A+ G +A NG Sbjct: 1 MRTTRRVFLGGAASAVIGSMAGPGLIRSACAQGAGSTVRIGMVLPVTGPGADAGRFALNG 60 Query: 55 AKLALAAVNKAGGVLGKQVELVIEDDQTTNPGIVLAFSKLAAQSDIVAFLGSIRSTQVQA 114 AKLAL AVNKAGGVLGK +E+V EDDQTTNPG VLAFSKLA+QSD+V FLGSIRSTQ A Sbjct: 61 AKLALEAVNKAGGVLGKPLEIVTEDDQTTNPGAVLAFSKLASQSDLVGFLGSIRSTQNHA 120 Query: 115 MAPDVIKVGKPVMIGGTNPDLTHSGNPWLFRFRPNDNYSGRVIADFGVNTLGKKKWAIVH 174 MAPD++K GKPV GGT+P LT GNPWLFRFRPND+YS RVIADFG+NTL KKKWA++H Sbjct: 121 MAPDILKTGKPVCFGGTDPVLTQMGNPWLFRFRPNDSYSARVIADFGINTLAKKKWAVIH 180 Query: 175 STDAFGTAGGKALTEALTKLGAPPVLDQGYANQSQDFTPVVLAVKQSGADVLGTYFTFEN 234 STDAFGT+G KALTEAL K A LDQGY+NQSQDFTPVVLA++QSGA+++G+YFTFEN Sbjct: 181 STDAFGTSGAKALTEALGKASASVALDQGYSNQSQDFTPVVLAIRQSGAEIIGSYFTFEN 240 Query: 235 DLGIFARQLRQLGVNIPWVGSPSVVAVSSTKLAGPALFNTYGVADFAEDSSDAAKAFGKA 294 DLGIFARQLRQLGV +PWVGSPS+ V++ KLAGP+L+ TYGVAD+AEDSS+AA+AFGKA Sbjct: 241 DLGIFARQLRQLGVTVPWVGSPSITNVTALKLAGPSLYGTYGVADYAEDSSEAARAFGKA 300 Query: 295 YRDAYKTAPDNQSAWPYDAITILSAAINKAGSTDPNKIRDAILATQKFAGAEGEYNFDKN 354 YR A K APDNQS+W YDA+T+L+ AINKAG TDP IR+A+L+ + GAEG YNFDKN Sbjct: 301 YRAATKIAPDNQSSWTYDAVTVLALAINKAGKTDPQAIREALLSVRGHEGAEGTYNFDKN 360 Query: 355 GDGLHGYNVVKNDKGKIVYDKHIDF 379 GDGLHGYNVVKNDKG I +DK IDF Sbjct: 361 GDGLHGYNVVKNDKGTITFDKRIDF 385 >ref|YP_001773181.1| extracellular ligand-binding receptor [Methylobacterium sp. 4-46] gb|ACA20747.1| Extracellular ligand-binding receptor [Methylobacterium sp. 4-46] Length = 387 Score = 568 bits (1465), Expect = e-160, Method: Compositional matrix adjust. Identities = 280/385 (72%), Positives = 324/385 (84%), Gaps = 5/385 (1%) Query: 1 MKLTRREF---SAGLAAGLAAPALMRSAWAQGA--TIKIGMCVPVTGPAAEQGLWAQNGA 55 M+ TRR F +A A G A P ++RSA AQGA T +IGM +PVTGP A+ G +A NGA Sbjct: 1 MRTTRRVFLGGAASAAVGAAFPGVIRSACAQGAGATTRIGMVLPVTGPGADAGRFALNGA 60 Query: 56 KLALAAVNKAGGVLGKQVELVIEDDQTTNPGIVLAFSKLAAQSDIVAFLGSIRSTQVQAM 115 K+AL AVNKAGGVLGK +E+V EDDQTTNPG VLAFSKLA+QSD+V FLGSIRSTQ AM Sbjct: 61 KIALEAVNKAGGVLGKPLEIVTEDDQTTNPGAVLAFSKLASQSDLVGFLGSIRSTQNHAM 120 Query: 116 APDVIKVGKPVMIGGTNPDLTHSGNPWLFRFRPNDNYSGRVIADFGVNTLGKKKWAIVHS 175 APD++K GKPV GGT+P LT GNPWLFRFRPND+YS RVIADFGVNTL KKKWA++HS Sbjct: 121 APDILKTGKPVCFGGTDPVLTQMGNPWLFRFRPNDSYSARVIADFGVNTLSKKKWAVIHS 180 Query: 176 TDAFGTAGGKALTEALTKLGAPPVLDQGYANQSQDFTPVVLAVKQSGADVLGTYFTFEND 235 TDAFGT+G KALTEAL K GA LDQGY+NQSQDFTPVVLA++QSGA+V+G+YFTFEND Sbjct: 181 TDAFGTSGAKALTEALAKAGATVALDQGYSNQSQDFTPVVLAIRQSGAEVIGSYFTFEND 240 Query: 236 LGIFARQLRQLGVNIPWVGSPSVVAVSSTKLAGPALFNTYGVADFAEDSSDAAKAFGKAY 295 LGIFARQLRQLGV +PWVGSPS+V V++ KLAGP+LF TYGVAD+AE+SS+AA+AFGKAY Sbjct: 241 LGIFARQLRQLGVTVPWVGSPSIVNVTALKLAGPSLFGTYGVADYAEESSEAARAFGKAY 300 Query: 296 RDAYKTAPDNQSAWPYDAITILSAAINKAGSTDPNKIRDAILATQKFAGAEGEYNFDKNG 355 R K APDNQS+W YDA+T+L+ AINKAG TDP IR+A+L+ + GAEG YNFDKNG Sbjct: 301 RAVTKIAPDNQSSWTYDAVTVLAMAINKAGKTDPQAIREALLSIRGHEGAEGTYNFDKNG 360 Query: 356 DGLHGYNVVKNDKGKIVYDKHIDFN 380 DGLHGYNVVKNDKG IV+DK IDFN Sbjct: 361 DGLHGYNVVKNDKGSIVFDKRIDFN 385 >ref|YP_001766750.1| extracellular ligand-binding receptor [Methylobacterium radiotolerans JCM 2831] gb|ACB27948.1| Extracellular ligand-binding receptor [Methylobacterium radiotolerans JCM 2831] Length = 387 Score = 560 bits (1444), Expect = e-157, Method: Compositional matrix adjust. Identities = 271/384 (70%), Positives = 319/384 (83%), Gaps = 5/384 (1%) Query: 1 MKLTRREFSAGLAAGLA---APALMRSAWAQGA--TIKIGMCVPVTGPAAEQGLWAQNGA 55 M+ TRR F G A+ +A AP ++RSA AQGA T++IGM +PVTGP A+ G +A GA Sbjct: 1 MRTTRRVFLTGAASAVASGLAPGVIRSACAQGAGSTVRIGMVLPVTGPGADAGRYALAGA 60 Query: 56 KLALAAVNKAGGVLGKQVELVIEDDQTTNPGIVLAFSKLAAQSDIVAFLGSIRSTQVQAM 115 K+AL AVNKAGGVLGK +E+V EDDQTTNPG V AFSKLA+QSD+V FLGSIRSTQ AM Sbjct: 61 KIALEAVNKAGGVLGKPLEIVTEDDQTTNPGAVFAFSKLASQSDLVGFLGSIRSTQNHAM 120 Query: 116 APDVIKVGKPVMIGGTNPDLTHSGNPWLFRFRPNDNYSGRVIADFGVNTLGKKKWAIVHS 175 APD++K GKPV GGT+P LT GNPWLFRFRPND++S RVIA+ GVN LGKKKWAI+HS Sbjct: 121 APDILKTGKPVCFGGTDPVLTQLGNPWLFRFRPNDSFSARVIAEHGVNGLGKKKWAIIHS 180 Query: 176 TDAFGTAGGKALTEALTKLGAPPVLDQGYANQSQDFTPVVLAVKQSGADVLGTYFTFEND 235 TDAFGT+G KALTE+L K GA LDQGY NQSQDFTPVVLA++QSGADV+G+YFTFEND Sbjct: 181 TDAFGTSGAKALTESLAKGGATVALDQGYTNQSQDFTPVVLAIRQSGADVIGSYFTFEND 240 Query: 236 LGIFARQLRQLGVNIPWVGSPSVVAVSSTKLAGPALFNTYGVADFAEDSSDAAKAFGKAY 295 +GIFARQLRQLGV PWVGSPS+ V++ KLAGP+L+ TYGVAD+AE+SSDAA+AFGKAY Sbjct: 241 IGIFARQLRQLGVTAPWVGSPSITNVTALKLAGPSLYGTYGVADYAEESSDAARAFGKAY 300 Query: 296 RDAYKTAPDNQSAWPYDAITILSAAINKAGSTDPNKIRDAILATQKFAGAEGEYNFDKNG 355 R A K APDNQS+W +DA+T+L+ AIN AG TDP +R+AILA + GAEG YNFDKNG Sbjct: 301 RAAMKVAPDNQSSWTFDAVTVLAKAINTAGKTDPQAVREAILAVRGHEGAEGSYNFDKNG 360 Query: 356 DGLHGYNVVKNDKGKIVYDKHIDF 379 DGLHGYNVV+NDKG IV+D+ IDF Sbjct: 361 DGLHGYNVVRNDKGNIVFDRRIDF 384