BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0066.0008.p (291 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_531574.1| inner-membrane translocator [Rhodopseudomonas p... 500 e-139 ref|ZP_08629165.1| high-affinity branched-chain amino acid trans... 491 e-137 ref|YP_002501658.1| inner-membrane translocator [Methylobacteriu... 481 e-134 ref|YP_001773182.1| inner-membrane translocator [Methylobacteriu... 479 e-133 ref|YP_001766751.1| inner-membrane translocator [Methylobacteriu... 451 e-125 >ref|YP_531574.1| inner-membrane translocator [Rhodopseudomonas palustris BisB18] gb|ABD87255.1| inner-membrane translocator [Rhodopseudomonas palustris BisB18] Length = 291 Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust. Identities = 265/291 (91%), Positives = 278/291 (95%) Query: 1 MDLVLQLLFTGIGIGAVYALVALGFVLIFRATNVVNFAQGEFSMVAAYLMVVFSVDLGWP 60 MDL LQLLFTGIGIGAVYALVALGFVLIFRATNVVNFAQGEFSMVAAYLMVVF+VDLGWP Sbjct: 1 MDLALQLLFTGIGIGAVYALVALGFVLIFRATNVVNFAQGEFSMVAAYLMVVFAVDLGWP 60 Query: 61 YWLSFLIALAGMALFGVIFNLGVYYPLRNRTYLPVIIATIGASILLSNSVLAIYGPQPQV 120 YWLSFL ALAGMAL G IFNLGVYYPLR+RT+LPVIIATIGASIL++NSVLAIYGPQPQV Sbjct: 61 YWLSFLCALAGMALLGAIFNLGVYYPLRHRTFLPVIIATIGASILMANSVLAIYGPQPQV 120 Query: 121 LQGWFDTPGIQLGPVYLDSQYLLIIGVTILLVLFNFWFFEKTLLGKKLQATSQDKEMASL 180 L+GWF+TPGIQLGPVYLDSQYLLII VT LV FN+WFFE T+LGKKLQATSQDKEMASL Sbjct: 121 LEGWFETPGIQLGPVYLDSQYLLIIAVTCALVAFNYWFFEHTMLGKKLQATSQDKEMASL 180 Query: 181 LGISVSTMIMITFIYSAVLGGLAGILVAPVLFVSIQMGSTIALKAFAATIIGGFGDVAGA 240 LGISVS MIMITFIYSAVLGGLAGILVAPVLFVSIQMGSTIALKAFAATIIGGFGDV GA Sbjct: 181 LGISVSGMIMITFIYSAVLGGLAGILVAPVLFVSIQMGSTIALKAFAATIIGGFGDVTGA 240 Query: 241 IVGGLALGVIETFGAAYISVPYKDGFAFLVLIAFLVFRPQGIFGERVAEKA 291 I+GGL+LG+IETFGAAYISVPYKD FAFLVL+ FLVFRPQGIFGERVAEKA Sbjct: 241 IIGGLSLGIIETFGAAYISVPYKDAFAFLVLVLFLVFRPQGIFGERVAEKA 291 >ref|ZP_08629165.1| high-affinity branched-chain amino acid transport system permease protein [Bradyrhizobiaceae bacterium SG-6C] gb|EGP07658.1| high-affinity branched-chain amino acid transport system permease protein [Bradyrhizobiaceae bacterium SG-6C] Length = 291 Score = 491 bits (1264), Expect = e-137, Method: Compositional matrix adjust. Identities = 257/291 (88%), Positives = 280/291 (96%) Query: 1 MDLVLQLLFTGIGIGAVYALVALGFVLIFRATNVVNFAQGEFSMVAAYLMVVFSVDLGWP 60 MD +LQLLFTG+GIG+VYALVALGFVLIFRATNVVNFAQGEFSMVAA+LMVVF+VDL WP Sbjct: 1 MDQILQLLFTGVGIGSVYALVALGFVLIFRATNVVNFAQGEFSMVAAFLMVVFAVDLQWP 60 Query: 61 YWLSFLIALAGMALFGVIFNLGVYYPLRNRTYLPVIIATIGASILLSNSVLAIYGPQPQV 120 YWLSFLI+L GMALFGVIFNLGVYYPLR+R++LPVIIATIGASI L+NSVLAIYGP PQV Sbjct: 61 YWLSFLISLGGMALFGVIFNLGVYYPLRHRSFLPVIIATIGASIFLANSVLAIYGPAPQV 120 Query: 121 LQGWFDTPGIQLGPVYLDSQYLLIIGVTILLVLFNFWFFEKTLLGKKLQATSQDKEMASL 180 L+GWF+TPGIQLGPVYLDSQYLLII VT++LV+ N+WFFE T+LGKKLQATSQDKEMASL Sbjct: 121 LEGWFETPGIQLGPVYLDSQYLLIIAVTLVLVVLNYWFFEHTMLGKKLQATSQDKEMASL 180 Query: 181 LGISVSTMIMITFIYSAVLGGLAGILVAPVLFVSIQMGSTIALKAFAATIIGGFGDVAGA 240 LGISVS MIMITFIYSAVLGGLAGILVAP+LFVSIQMG+TIALKAFAATIIGGFGDV GA Sbjct: 181 LGISVSNMIMITFIYSAVLGGLAGILVAPILFVSIQMGATIALKAFAATIIGGFGDVTGA 240 Query: 241 IVGGLALGVIETFGAAYISVPYKDGFAFLVLIAFLVFRPQGIFGERVAEKA 291 I+GG+ALG+IETFGAAY+SVPYKD FAFLVLIAFLVFRPQGIFGERVAEKA Sbjct: 241 IIGGIALGIIETFGAAYVSVPYKDAFAFLVLIAFLVFRPQGIFGERVAEKA 291 >ref|YP_002501658.1| inner-membrane translocator [Methylobacterium nodulans ORS 2060] gb|ACL61355.1| inner-membrane translocator [Methylobacterium nodulans ORS 2060] Length = 291 Score = 481 bits (1238), Expect = e-134, Method: Compositional matrix adjust. Identities = 242/291 (83%), Positives = 269/291 (92%) Query: 1 MDLVLQLLFTGIGIGAVYALVALGFVLIFRATNVVNFAQGEFSMVAAYLMVVFSVDLGWP 60 MDLVLQLLFTGIGIGAVYALVALGFVLIFRATNVVNFAQGEFSMVAA+LMVVF+VDL WP Sbjct: 1 MDLVLQLLFTGIGIGAVYALVALGFVLIFRATNVVNFAQGEFSMVAAFLMVVFAVDLQWP 60 Query: 61 YWLSFLIALAGMALFGVIFNLGVYYPLRNRTYLPVIIATIGASILLSNSVLAIYGPQPQV 120 YWLSFL+A+ GMA+ G +FNLGVYYPLR+RTYLPVII+TIGASI L+N+ LA+YGPQPQV Sbjct: 61 YWLSFLLAIGGMAVLGALFNLGVYYPLRHRTYLPVIISTIGASIFLANTTLALYGPQPQV 120 Query: 121 LQGWFDTPGIQLGPVYLDSQYLLIIGVTILLVLFNFWFFEKTLLGKKLQATSQDKEMASL 180 L F+T GI LGPV+LDSQYLLII VT LLV F +WFFE TLLGKKLQATSQDKEMA+L Sbjct: 121 LSPVFETQGILLGPVFLDSQYLLIIAVTALLVAFQYWFFEHTLLGKKLQATSQDKEMAAL 180 Query: 181 LGISVSTMIMITFIYSAVLGGLAGILVAPVLFVSIQMGSTIALKAFAATIIGGFGDVAGA 240 LGI V+ MIM+TF+YSAVLGG+AGILVAPVLFVSIQMG+TIALKAFAATIIGGFGDV GA Sbjct: 181 LGIPVAGMIMLTFVYSAVLGGIAGILVAPVLFVSIQMGATIALKAFAATIIGGFGDVTGA 240 Query: 241 IVGGLALGVIETFGAAYISVPYKDGFAFLVLIAFLVFRPQGIFGERVAEKA 291 I+GGLALG+IETFGAAY+SVPYKD FAF+VL+AFL RPQG+FGER+AEKA Sbjct: 241 IIGGLALGIIETFGAAYVSVPYKDAFAFIVLVAFLTLRPQGLFGERIAEKA 291 >ref|YP_001773182.1| inner-membrane translocator [Methylobacterium sp. 4-46] gb|ACA20748.1| inner-membrane translocator [Methylobacterium sp. 4-46] Length = 291 Score = 479 bits (1234), Expect = e-133, Method: Compositional matrix adjust. Identities = 241/291 (82%), Positives = 270/291 (92%) Query: 1 MDLVLQLLFTGIGIGAVYALVALGFVLIFRATNVVNFAQGEFSMVAAYLMVVFSVDLGWP 60 MDLVLQLLFTGIGIGAVYALVALGFVLIFRATNVVNFAQGEFSMVAA+LMVVF+VDL WP Sbjct: 1 MDLVLQLLFTGIGIGAVYALVALGFVLIFRATNVVNFAQGEFSMVAAFLMVVFAVDLEWP 60 Query: 61 YWLSFLIALAGMALFGVIFNLGVYYPLRNRTYLPVIIATIGASILLSNSVLAIYGPQPQV 120 YWLSFL+A+ GMAL G +FNLGVYYPLR+R+YLPVII+TIGASI L+N+ LA+YGPQPQV Sbjct: 61 YWLSFLLAIGGMALLGALFNLGVYYPLRHRSYLPVIISTIGASIFLANTTLALYGPQPQV 120 Query: 121 LQGWFDTPGIQLGPVYLDSQYLLIIGVTILLVLFNFWFFEKTLLGKKLQATSQDKEMASL 180 L F+T GI LGPV+LDSQYLLII VT +LV F +WFFE TL+GKKLQATSQDKEMA+L Sbjct: 121 LPPVFETQGILLGPVFLDSQYLLIIAVTAVLVAFQYWFFEHTLIGKKLQATSQDKEMAAL 180 Query: 181 LGISVSTMIMITFIYSAVLGGLAGILVAPVLFVSIQMGSTIALKAFAATIIGGFGDVAGA 240 LGI V+ MIM+TF+YSAVLGG+AGILVAPVLFVSIQMG+TIALKAFAATIIGGFGDV GA Sbjct: 181 LGIPVAGMIMLTFVYSAVLGGIAGILVAPVLFVSIQMGATIALKAFAATIIGGFGDVTGA 240 Query: 241 IVGGLALGVIETFGAAYISVPYKDGFAFLVLIAFLVFRPQGIFGERVAEKA 291 I+GGLALG+IETFGAAYISVPYKD FAF+VL+AFL+ RPQG+FGER+AEKA Sbjct: 241 IIGGLALGIIETFGAAYISVPYKDAFAFIVLVAFLILRPQGLFGERIAEKA 291 >ref|YP_001766751.1| inner-membrane translocator [Methylobacterium radiotolerans JCM 2831] gb|ACB27949.1| inner-membrane translocator [Methylobacterium radiotolerans JCM 2831] Length = 291 Score = 451 bits (1161), Expect = e-125, Method: Compositional matrix adjust. Identities = 239/291 (82%), Positives = 265/291 (91%) Query: 1 MDLVLQLLFTGIGIGAVYALVALGFVLIFRATNVVNFAQGEFSMVAAYLMVVFSVDLGWP 60 MDL+LQLLFTGIGIG+VYALVALGFVLIFRATNVVNFAQGEFSMVAA+LMVVF+VDL WP Sbjct: 1 MDLILQLLFTGIGIGSVYALVALGFVLIFRATNVVNFAQGEFSMVAAFLMVVFAVDLQWP 60 Query: 61 YWLSFLIALAGMALFGVIFNLGVYYPLRNRTYLPVIIATIGASILLSNSVLAIYGPQPQV 120 YWLS L+ L GMAL G +FNLGVYYPLR+R+YLPVII+TIGASI L+N+ LA+YGPQPQV Sbjct: 61 YWLSLLLTLGGMALLGALFNLGVYYPLRHRSYLPVIISTIGASIFLANTTLALYGPQPQV 120 Query: 121 LQGWFDTPGIQLGPVYLDSQYLLIIGVTILLVLFNFWFFEKTLLGKKLQATSQDKEMASL 180 L F+T G LGPV+LDSQYLLII VT LV F +WFFE TL+GKKLQATSQDKEMA+L Sbjct: 121 LPPVFETQGFLLGPVFLDSQYLLIIAVTAALVAFQYWFFEHTLVGKKLQATSQDKEMAAL 180 Query: 181 LGISVSTMIMITFIYSAVLGGLAGILVAPVLFVSIQMGSTIALKAFAATIIGGFGDVAGA 240 LGI V+ MIM+TF+YSAVLGG+AGILVAPVLFVSIQMG+TIALKAFAATIIGGFGDV GA Sbjct: 181 LGIPVAGMIMLTFVYSAVLGGIAGILVAPVLFVSIQMGATIALKAFAATIIGGFGDVTGA 240 Query: 241 IVGGLALGVIETFGAAYISVPYKDGFAFLVLIAFLVFRPQGIFGERVAEKA 291 I+GGLALG+IETFGAAYISVPYKD FAFLVL+ FLV RPQG+FGERVAEKA Sbjct: 241 IIGGLALGIIETFGAAYISVPYKDAFAFLVLVVFLVVRPQGLFGERVAEKA 291