BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0066.0007.p (590 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_531575.1| ABC transporter-like protein [Rhodopseudomonas ... 958 0.0 ref|ZP_08629166.1| branched-chain amino acid transport ATP-bindi... 917 0.0 ref|YP_001773183.1| ABC transporter-like protein [Methylobacteri... 754 0.0 ref|YP_002501657.1| inner-membrane translocator [Methylobacteriu... 737 0.0 ref|YP_001766752.1| ABC transporter related [Methylobacterium ra... 720 0.0 >ref|YP_531575.1| ABC transporter-like protein [Rhodopseudomonas palustris BisB18] gb|ABD87256.1| ABC transporter related [Rhodopseudomonas palustris BisB18] Length = 593 Score = 958 bits (2477), Expect = 0.0, Method: Compositional matrix adjust. Identities = 496/593 (83%), Positives = 535/593 (90%), Gaps = 3/593 (0%) Query: 1 MSA-TDNM-IPAPAVRSKPLIIRHLPYFIGAAVLVALAAGMRFDGYILNILLQATTFSIA 58 MSA +DNM + A+R KPL++RHLPYF+GAA++VALAA + FDGYILNIL+QATTF+IA Sbjct: 1 MSAGSDNMPLAVAALRGKPLLLRHLPYFLGAAIVVALAATVSFDGYILNILMQATTFAIA 60 Query: 59 VFGLSVVLGLCGQINLAQAAFFGFGAYAVGLGTADLHLNFWLCLVGACAITLIAGAFLGM 118 VFGLSVVLGLCGQINLAQAAFFGFGAYAVG+GT D L++WLCL C I L+AGA LG Sbjct: 61 VFGLSVVLGLCGQINLAQAAFFGFGAYAVGIGTTDFQLSYWLCLAAGCGIALLAGAVLGA 120 Query: 119 STLRLGGHYLAMVTISFQQIVTLVMINAIGVTHGPDGVANIRRPELFQSSQSYLAFCVAM 178 STLRLGGHYLAMVTISFQQIVTLVMINAI +THGPDGV I RP LFQSSQ+YLAFCVAM Sbjct: 121 STLRLGGHYLAMVTISFQQIVTLVMINAIWLTHGPDGVGRIGRPALFQSSQAYLAFCVAM 180 Query: 179 LAIVGYLVWHLPDTKLGRAMRAVRDNELAAGVNGIDVFRTKIYAFGLCALLGGLAGGLFA 238 LA+VGY VWHLPDT+LGRAMRAVRDNELAAGV GIDVFRTK+YAF L A+LGGLAGGLFA Sbjct: 181 LALVGYFVWHLPDTRLGRAMRAVRDNELAAGVAGIDVFRTKVYAFALSAVLGGLAGGLFA 240 Query: 239 GGFAYVSPDQFSFAESIVFLTMSLLGGVASPIGSVIGTGLLILIPEWLRFLKSVPGLYLA 298 GGF+Y+SPDQFSFAESIVFLTMSLLGG ASPIGS IGT LLILIPEWLRFLKSVPGLYLA Sbjct: 241 GGFSYISPDQFSFAESIVFLTMSLLGGGASPIGSAIGTALLILIPEWLRFLKSVPGLYLA 300 Query: 299 IYGLFVILIIRFMPDGIWGFVSDAFTRWRAHTKAPPAAAALQLKPATSGGDIVLEVTGLS 358 IYGL VILIIRFMPDGIWGFV+ A RWRA K A LQL PA GGDIVL+VTGL+ Sbjct: 301 IYGLSVILIIRFMPDGIWGFVNAATQRWRAKAKLHAAGPPLQLSPAHVGGDIVLQVTGLA 360 Query: 359 KHFGGLKAVDGVDIAVKRGSVHALIGPNGSGKTTTLNVLSGLYKATAGKIVLDGTDITNM 418 K+FGGLKAVD VDIAVKRG VHALIGPNGSGKTTTLNVLSGLY+ATAG+++LDGTD+T M Sbjct: 361 KYFGGLKAVDNVDIAVKRGGVHALIGPNGSGKTTTLNVLSGLYRATAGEVLLDGTDVTTM 420 Query: 419 APHQRTAAGLGRTFQNIRLFRSMTALENVEIGAERPGNTMIGKGED-ALTERAMEALTFV 477 PH R AAGLGRTFQNIRLFRSMTALENV IGAERPGNT+IG G D AL +RAM AL FV Sbjct: 421 PPHLRAAAGLGRTFQNIRLFRSMTALENVVIGAERPGNTLIGNGGDAALHQRAMSALAFV 480 Query: 478 GLGSRANEMISSFSYGHQRLIEIARALASNPTLLLLDEPAAGLNSTEKLDLHELLKRIAA 537 GLG+RANE+ISSFSYGHQRLIEIARALA+NPTLLLLDEPAAGLNS+EKL+LHELLKRIAA Sbjct: 481 GLGARANELISSFSYGHQRLIEIARALAANPTLLLLDEPAAGLNSSEKLELHELLKRIAA 540 Query: 538 QGLTILIIDHDMTLVSEAAQHITVLNFGRRIADGESMAVLRHPDVVSAYLGSE 590 QGLTILIIDHDMTLVSEAAQHITVLNFGRRIADGESMAVLRHPDVVSAYLGSE Sbjct: 541 QGLTILIIDHDMTLVSEAAQHITVLNFGRRIADGESMAVLRHPDVVSAYLGSE 593 >ref|ZP_08629166.1| branched-chain amino acid transport ATP-binding protein [Bradyrhizobiaceae bacterium SG-6C] gb|EGP07659.1| branched-chain amino acid transport ATP-binding protein [Bradyrhizobiaceae bacterium SG-6C] Length = 592 Score = 917 bits (2369), Expect = 0.0, Method: Compositional matrix adjust. Identities = 477/588 (81%), Positives = 529/588 (89%), Gaps = 1/588 (0%) Query: 4 TDNMIPAPAVRSKPLIIRHLPYFIGAAVLVALAAGMRFDGYILNILLQATTFSIAVFGLS 63 ++NM A RS P ++RHLPYF+ AA+ VA AA M FDGY LNIL+QATTFSIAVFGLS Sbjct: 5 SENMPAAVPARSTPQMLRHLPYFVAAAIAVAAAATMHFDGYALNILMQATTFSIAVFGLS 64 Query: 64 VVLGLCGQINLAQAAFFGFGAYAVGLGTADLHLNFWLCLVGACAITLIAGAFLGMSTLRL 123 VVLGLCGQINLAQAAFFG GAY VGLGTAD +NFW+CLVG + L AGA LGMSTL+L Sbjct: 65 VVLGLCGQINLAQAAFFGLGAYVVGLGTADYQVNFWICLVGGALLALAAGALLGMSTLKL 124 Query: 124 GGHYLAMVTISFQQIVTLVMINAIGVTHGPDGVANIRRPELFQSSQSYLAFCVAMLAIVG 183 GGHYLAMVTISFQQIVTLVMINAI +T GPDG++ I RP LFQS QS+LAFCVA LA++G Sbjct: 125 GGHYLAMVTISFQQIVTLVMINAIWLTRGPDGISKIGRPALFQSQQSFLAFCVAALAVIG 184 Query: 184 YLVWHLPDTKLGRAMRAVRDNELAAGVNGIDVFRTKIYAFGLCALLGGLAGGLFAGGFAY 243 Y+VW LPDT++GRAMRAVRDNELAAGV GID+FRTK+ AF LCALLGG+ GGLFAGGF+Y Sbjct: 185 YIVWRLPDTRMGRAMRAVRDNELAAGVAGIDIFRTKVAAFALCALLGGIGGGLFAGGFSY 244 Query: 244 VSPDQFSFAESIVFLTMSLLGGVASPIGSVIGTGLLILIPEWLRFLKSVPGLYLAIYGLF 303 VSPDQFSFAESIVFLTM+LLGGVASPIG+ IGTGLLILIPEWLRFLKS+PGLYLAIYGLF Sbjct: 245 VSPDQFSFAESIVFLTMALLGGVASPIGAAIGTGLLILIPEWLRFLKSIPGLYLAIYGLF 304 Query: 304 VILIIRFMPDGIWGFVSDAFTRWRAHTKAPPAAAALQLKPATSGGDIVLEVTGLSKHFGG 363 VILI+RFMPDGIWGFV + TRWRA A+ ALQL PA +GGD VLEVTGLSKHFGG Sbjct: 305 VILIVRFMPDGIWGFVQELITRWRAKAAPEIASPALQLVPARTGGDTVLEVTGLSKHFGG 364 Query: 364 LKAVDGVDIAVKRGSVHALIGPNGSGKTTTLNVLSGLYKATAGKIVLDGTDITNMAPHQR 423 LKAVD VD+AVKRGSVHALIGPNGSGKTTTLN+LSGLYK TAGKIVLDGTD+T+M HQR Sbjct: 365 LKAVDKVDLAVKRGSVHALIGPNGSGKTTTLNMLSGLYKTTAGKIVLDGTDVTDMPAHQR 424 Query: 424 TAAGLGRTFQNIRLFRSMTALENVEIGAERPGNTMIGK-GEDALTERAMEALTFVGLGSR 482 TA+GLGRTFQNIRLFRSMTALENV IGAERPGNT++G+ G+DALT+RAM ALTFVGLG R Sbjct: 425 TASGLGRTFQNIRLFRSMTALENVVIGAERPGNTLVGEGGQDALTQRAMSALTFVGLGGR 484 Query: 483 ANEMISSFSYGHQRLIEIARALASNPTLLLLDEPAAGLNSTEKLDLHELLKRIAAQGLTI 542 ANE++SSFSYGHQRLIEIARALA NPTLLLLDEPAAGLNS+EK++LH+LLKRIAAQGLTI Sbjct: 485 ANELVSSFSYGHQRLIEIARALAGNPTLLLLDEPAAGLNSSEKVELHDLLKRIAAQGLTI 544 Query: 543 LIIDHDMTLVSEAAQHITVLNFGRRIADGESMAVLRHPDVVSAYLGSE 590 LIIDHDMTLV EAAQHITVLNFG+RIADGES+AVL+HPDV+SAYLG+E Sbjct: 545 LIIDHDMTLVREAAQHITVLNFGKRIADGESLAVLQHPDVISAYLGTE 592 >ref|YP_001773183.1| ABC transporter-like protein [Methylobacterium sp. 4-46] gb|ACA20749.1| ABC transporter related [Methylobacterium sp. 4-46] Length = 608 Score = 754 bits (1946), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/581 (70%), Positives = 464/581 (79%) Query: 10 APAVRSKPLIIRHLPYFIGAAVLVALAAGMRFDGYILNILLQATTFSIAVFGLSVVLGLC 69 APA ++ L + L Y AA +VALA +GY+LNIL+QA T++IAV GL+VVLGLC Sbjct: 12 APAAPARRLPLGSLLYAALAAGIVALAVTNPVNGYLLNILMQAATYAIAVIGLTVVLGLC 71 Query: 70 GQINLAQAAFFGFGAYAVGLGTADLHLNFWLCLVGACAITLIAGAFLGMSTLRLGGHYLA 129 GQINLAQAAFFG GAYAVGLGT DL ++FWLCL L+AGAFLG STLRLGGHYLA Sbjct: 72 GQINLAQAAFFGLGAYAVGLGTVDLGVSFWLCLAAGMLAALVAGAFLGASTLRLGGHYLA 131 Query: 130 MVTISFQQIVTLVMINAIGVTHGPDGVANIRRPELFQSSQSYLAFCVAMLAIVGYLVWHL 189 MVTISFQQI+TLV++N I VTHGPDGV I+RP LF Q+YL C+A+LA+V +LVWH+ Sbjct: 132 MVTISFQQILTLVLVNWIPVTHGPDGVPRIQRPALFSDGQAYLGLCLAVLAVVAWLVWHM 191 Query: 190 PDTKLGRAMRAVRDNELAAGVNGIDVFRTKIYAFGLCALLGGLAGGLFAGGFAYVSPDQF 249 P T+LGRAMRAVRDNELAAGV GIDV+RTK+ AF + ALL GL GGLFAG F YVSPDQF Sbjct: 192 PRTRLGRAMRAVRDNELAAGVTGIDVYRTKVMAFAIGALLAGLGGGLFAGSFTYVSPDQF 251 Query: 250 SFAESIVFLTMSLLGGVASPIGSVIGTGLLILIPEWLRFLKSVPGLYLAIYGLFVILIIR 309 SFAESIVFLTM+LLGGV SP G+VIGTGLLILIPEWLRFLK +PGLYLAIYGL VILI+ Sbjct: 252 SFAESIVFLTMALLGGVGSPAGAVIGTGLLILIPEWLRFLKEIPGLYLAIYGLAVILIVV 311 Query: 310 FMPDGIWGFVSDAFTRWRAHTKAPPAAAALQLKPATSGGDIVLEVTGLSKHFGGLKAVDG 369 FMP+GIWGF+ D R R A P A L L +G VLEV GL+KHFGGLKAVD Sbjct: 312 FMPEGIWGFLGDQVKRLRPGRAAAPRAGDLALTQGAAGPAPVLEVEGLAKHFGGLKAVDE 371 Query: 370 VDIAVKRGSVHALIGPNGSGKTTTLNVLSGLYKATAGKIVLDGTDITNMAPHQRTAAGLG 429 V V RG +HALIGPNGSGKTTTLNVLSGLY+ TAG++ LDG DIT+ PH R AAGLG Sbjct: 372 VSFTVTRGGIHALIGPNGSGKTTTLNVLSGLYRPTAGRVRLDGQDITHAPPHARAAAGLG 431 Query: 430 RTFQNIRLFRSMTALENVEIGAERPGNTMIGKGEDALTERAMEALTFVGLGSRANEMISS 489 RTFQNIRLFRSM+ALENV IGAERPGN + G+ L RA AL FVGL +RA+E +S+ Sbjct: 432 RTFQNIRLFRSMSALENVVIGAERPGNPIEGRDRATLEARARAALAFVGLEARADEPVSA 491 Query: 490 FSYGHQRLIEIARALASNPTLLLLDEPAAGLNSTEKLDLHELLKRIAAQGLTILIIDHDM 549 FSYGHQRLIEIARALA NP LLLLDEPAAGLNSTEK L LL+R+AA+G+TILIIDHDM Sbjct: 492 FSYGHQRLIEIARALAGNPVLLLLDEPAAGLNSTEKGALTGLLRRVAAKGVTILIIDHDM 551 Query: 550 TLVSEAAQHITVLNFGRRIADGESMAVLRHPDVVSAYLGSE 590 TLVS+ A HITVLNFGRRIADG + AVLR P V+ AYLG E Sbjct: 552 TLVSDVASHITVLNFGRRIADGVTAAVLREPAVIEAYLGQE 592 >ref|YP_002501657.1| inner-membrane translocator [Methylobacterium nodulans ORS 2060] gb|ACL61354.1| inner-membrane translocator [Methylobacterium nodulans ORS 2060] Length = 611 Score = 737 bits (1903), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/582 (70%), Positives = 459/582 (78%), Gaps = 2/582 (0%) Query: 9 PAPAVRSKPLIIRHLPYFIGAAVLVALAAGMRFDGYILNILLQATTFSIAVFGLSVVLGL 68 P PA R PL L Y + AA LVALA M +GY+LNIL+QA T++IAV GL+VVLGL Sbjct: 15 PTPAARRLPL--GSLVYALVAAGLVALAVTMPVNGYLLNILMQAATYAIAVIGLTVVLGL 72 Query: 69 CGQINLAQAAFFGFGAYAVGLGTADLHLNFWLCLVGACAITLIAGAFLGMSTLRLGGHYL 128 CGQINLAQAAFFG GAYAVGLGT DL ++FW+CL A L+AGAFLG STLRLGGHYL Sbjct: 73 CGQINLAQAAFFGLGAYAVGLGTVDLGVSFWICLAAGLAAALVAGAFLGASTLRLGGHYL 132 Query: 129 AMVTISFQQIVTLVMINAIGVTHGPDGVANIRRPELFQSSQSYLAFCVAMLAIVGYLVWH 188 AMVTISFQQI+TLV++N I VTHGPDGV I+RP LF Q+YL C+A+LA+V ++VWH Sbjct: 133 AMVTISFQQILTLVLVNWIPVTHGPDGVPRIQRPALFTDGQAYLGLCLAVLAVVAWIVWH 192 Query: 189 LPDTKLGRAMRAVRDNELAAGVNGIDVFRTKIYAFGLCALLGGLAGGLFAGGFAYVSPDQ 248 +P T+LGRAMRAVRDNELAAGV GIDV+RTK+ AF + ALL GL GGLFAGGF YVSPDQ Sbjct: 193 MPRTRLGRAMRAVRDNELAAGVTGIDVYRTKVMAFAIGALLAGLGGGLFAGGFTYVSPDQ 252 Query: 249 FSFAESIVFLTMSLLGGVASPIGSVIGTGLLILIPEWLRFLKSVPGLYLAIYGLFVILII 308 FSFAESIVFLTM+LLGGV SP G+VIGTGLLILIPEWLRFLK +PGLYLAIYGL VILI+ Sbjct: 253 FSFAESIVFLTMALLGGVGSPAGAVIGTGLLILIPEWLRFLKEIPGLYLAIYGLAVILIV 312 Query: 309 RFMPDGIWGFVSDAFTRWRAHTKAPPAAAALQLKPATSGGDIVLEVTGLSKHFGGLKAVD 368 FMP+GIWGF+ D R R A L L + +LEV GLSKHFGGLKAVD Sbjct: 313 VFMPEGIWGFLGDQVRRLRPRRAPAGRADDLVLTQGPASPAPILEVEGLSKHFGGLKAVD 372 Query: 369 GVDIAVKRGSVHALIGPNGSGKTTTLNVLSGLYKATAGKIVLDGTDITNMAPHQRTAAGL 428 V V RG +HALIGPNGSGKTTTLNVLSGLY+ AG++ LDG DIT+ PH R AGL Sbjct: 373 EVSFTVTRGGIHALIGPNGSGKTTTLNVLSGLYRPNAGRVRLDGQDITHAPPHARAGAGL 432 Query: 429 GRTFQNIRLFRSMTALENVEIGAERPGNTMIGKGEDALTERAMEALTFVGLGSRANEMIS 488 GRTFQNIRLFRSM+ALENVEIGAERP N + G A RA AL FVGL +RA+E +S Sbjct: 433 GRTFQNIRLFRSMSALENVEIGAERPDNPLAGHDRAAREARARSALAFVGLEARADEPVS 492 Query: 489 SFSYGHQRLIEIARALASNPTLLLLDEPAAGLNSTEKLDLHELLKRIAAQGLTILIIDHD 548 +FSYGHQRLIEIARALA NP LLLLDEPAAGLNSTEK L LL+R+AA+G+TILIIDHD Sbjct: 493 AFSYGHQRLIEIARALAGNPVLLLLDEPAAGLNSTEKGALTGLLRRVAAKGVTILIIDHD 552 Query: 549 MTLVSEAAQHITVLNFGRRIADGESMAVLRHPDVVSAYLGSE 590 MTLVS+ A HITVLNFGR IADG + VLR P VV AYLG E Sbjct: 553 MTLVSDVASHITVLNFGRHIADGVAATVLREPAVVEAYLGQE 594 >ref|YP_001766752.1| ABC transporter related [Methylobacterium radiotolerans JCM 2831] gb|ACB27950.1| ABC transporter related [Methylobacterium radiotolerans JCM 2831] Length = 611 Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/550 (71%), Positives = 439/550 (79%) Query: 41 FDGYILNILLQATTFSIAVFGLSVVLGLCGQINLAQAAFFGFGAYAVGLGTADLHLNFWL 100 GY LNIL+QA T++IAV GL+VVLGLCGQINLAQAAFFG GAYAVGLGT D LNFW+ Sbjct: 46 LSGYALNILMQAATYAIAVIGLTVVLGLCGQINLAQAAFFGIGAYAVGLGTVDGGLNFWI 105 Query: 101 CLVGACAITLIAGAFLGMSTLRLGGHYLAMVTISFQQIVTLVMINAIGVTHGPDGVANIR 160 CL+ + ++ GA LG STLRLGGHYLAMVTISFQQI+TLV+ N I VTHGPDGV NIR Sbjct: 106 CLITGLGLAVVLGAALGASTLRLGGHYLAMVTISFQQILTLVLTNWIPVTHGPDGVPNIR 165 Query: 161 RPELFQSSQSYLAFCVAMLAIVGYLVWHLPDTKLGRAMRAVRDNELAAGVNGIDVFRTKI 220 RP LF QSYLA CV +LA+VG+LVWH+P T+LGRAMRAVRDNELAAGV+GID++RTK+ Sbjct: 166 RPALFADGQSYLALCVLVLAVVGWLVWHMPRTRLGRAMRAVRDNELAAGVSGIDIYRTKV 225 Query: 221 YAFGLCALLGGLAGGLFAGGFAYVSPDQFSFAESIVFLTMSLLGGVASPIGSVIGTGLLI 280 AF L ALL GL GGLFAG F Y+SPDQFSFAESIVFLTM+LLGGV SP+G+VIGT LLI Sbjct: 226 AAFALGALLAGLGGGLFAGSFTYISPDQFSFAESIVFLTMALLGGVGSPVGAVIGTALLI 285 Query: 281 LIPEWLRFLKSVPGLYLAIYGLFVILIIRFMPDGIWGFVSDAFTRWRAHTKAPPAAAALQ 340 LIPEWLRFLK +PGLYLAIYGL VILI+ FMPDGIWGF+ D R R APP AA L Sbjct: 286 LIPEWLRFLKEIPGLYLAIYGLAVILIVVFMPDGIWGFLGDQVRRLRRARPAPPPAAELT 345 Query: 341 LKPATSGGDIVLEVTGLSKHFGGLKAVDGVDIAVKRGSVHALIGPNGSGKTTTLNVLSGL 400 L + +LEV+ LSKHFGGLKAVD V V RG +HALIGPNGSGKTTTLNVLSGL Sbjct: 346 LSQGGASTAPMLEVSDLSKHFGGLKAVDAVSFTVARGGIHALIGPNGSGKTTTLNVLSGL 405 Query: 401 YKATAGKIVLDGTDITNMAPHQRTAAGLGRTFQNIRLFRSMTALENVEIGAERPGNTMIG 460 Y T G + L G D+T ++PH+R AAG+GRTFQNIRLFRSM+ALENV IGAERP N Sbjct: 406 YSPTGGTVRLAGQDVTRLSPHRRAAAGIGRTFQNIRLFRSMSALENVVIGAERPDNPSGA 465 Query: 461 KGEDALTERAMEALTFVGLGSRANEMISSFSYGHQRLIEIARALASNPTLLLLDEPAAGL 520 + L RA AL FVGL RA E IS FSYGHQRLIEIARALA NP LLLLDEPAAGL Sbjct: 466 RDRAGLEARARAALAFVGLEGRALEPISGFSYGHQRLIEIARALAGNPVLLLLDEPAAGL 525 Query: 521 NSTEKLDLHELLKRIAAQGLTILIIDHDMTLVSEAAQHITVLNFGRRIADGESMAVLRHP 580 NS+EK L LL+R+AA+GLTILIIDHDMTLVS+ A HITVLNFGRRIADG + VLR P Sbjct: 526 NSSEKNALTVLLRRMAAKGLTILIIDHDMTLVSDVASHITVLNFGRRIADGVTATVLREP 585 Query: 581 DVVSAYLGSE 590 V+ AYLG + Sbjct: 586 AVIQAYLGED 595