BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0065.0005.p         (135 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001965506.1| hypothetical protein [Sinorhizobium meliloti...    56   2e-06
ref|ZP_05067546.1| hypothetical protein OA238_4735 [Octadecabact...    52   4e-05
ref|ZP_03508151.1| hypothetical protein RetlB5_24059 [Rhizobium ...    45   0.004
gb|AAC64513.1| thymidine kinase [Macropodid herpesvirus 1]             37   1.0  
ref|XP_813358.1| electron-transfer-flavoprotein, alpha polypepti...    36   1.8  

>ref|YP_001965506.1| hypothetical protein [Sinorhizobium meliloti]
 gb|ABN47013.1| hypothetical protein [Sinorhizobium meliloti SM11]
          Length = 177

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 71/137 (51%), Gaps = 9/137 (6%)

Query: 3   SKLDEHMELVAKVVAKFISTGLLKHNIDSRGADTFLGEPVDND-----TFAAVLSWMLSE 57
           S ++ H E + ++++  ++ GL + + +   A   +   + ++      FA VL WM  E
Sbjct: 40  STIEYHYETMGRILSHLVNAGLSRVDFEPSDAMDIMTHRIGDEEDVVNAFADVLHWMKDE 99

Query: 58  GLIHAGNVSRTINGVVFVSQAQLSAKGLAIVR-QPLGG--GETIEKRIEKADAGDKKDWS 114
           GLI   +V     G  F +  QL++KG+A ++ +P     GE+IEK++ +    D   ++
Sbjct: 100 GLIRVASVQEFDGGYAF-NGVQLTSKGIAAIQAKPTDPELGESIEKKVGEKGELDISVYT 158

Query: 115 SIGDLIGGFAGGIMKSL 131
            IG  +GG  GG  ++L
Sbjct: 159 KIGSFVGGLIGGATQAL 175


>ref|ZP_05067546.1| hypothetical protein OA238_4735 [Octadecabacter antarcticus 238]
 gb|EDY92785.1| hypothetical protein OA238_4735 [Octadecabacter antarcticus 238]
          Length = 130

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 6/92 (6%)

Query: 47  FAAVLSWMLSEGLIHAGNVSRTINGVV--FVSQAQLSAKGLAIVRQPL---GGGETIEKR 101
           F   L W+ SEGLI     +RTI G      +Q  L++ G+ ++ Q +   G  E + + 
Sbjct: 40  FYPCLEWLESEGLIRVKAYNRTIGGHAGGSANQPVLTSYGMTVLGQKIIANGDTEQLSEG 99

Query: 102 IEKADAGDKKDWSSIGDLIGGFAGGIMKSLGS 133
           ++K  +G+   W  +GD IGG  GG+ KSLGS
Sbjct: 100 VKKVSSGESSLWQ-VGDAIGGILGGLTKSLGS 130


>ref|ZP_03508151.1| hypothetical protein RetlB5_24059 [Rhizobium etli Brasil 5]
          Length = 103

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 6/92 (6%)

Query: 3  SKLDEHMELVAKVVAKFISTGLLKHNIDSRGADTFLGEPVDND-----TFAAVLSWMLSE 57
          S ++ H + + ++++  I+ GL + + D   A   +   + ++     TFA VL WM  E
Sbjct: 2  STMEYHYQTIGRILSHLINAGLSRVDFDESDAMDVMTHRIGDEEAVLRTFADVLHWMNDE 61

Query: 58 GLIHAGNVSRTINGVVFVSQAQLSAKGLAIVR 89
          GLI   ++     G  F +  QL+AKG+++V+
Sbjct: 62 GLIRVRSIQEYEGGYAF-NGVQLTAKGVSVVQ 92


>gb|AAC64513.1| thymidine kinase [Macropodid herpesvirus 1]
          Length = 327

 Score = 37.0 bits (84), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 3/76 (3%)

Query: 42  VDNDTFAAVLSWMLSEGLIHAGNVSRTINGVVFVSQAQLSAKGLAIVRQPLGGGETIEKR 101
           VD    A+++ + L+  L+ + N+   +  + F+ +      G  +V   L GGET ++ 
Sbjct: 117 VDRHPIASLVCYPLARYLMGSFNIQTAMTFLSFIPKI---PPGTNLVLGKLPGGETAQRL 173

Query: 102 IEKADAGDKKDWSSIG 117
            E++  G+  DW  IG
Sbjct: 174 YERSRPGEVMDWHMIG 189


>ref|XP_813358.1| electron-transfer-flavoprotein, alpha polypeptide [Trypanosoma
           cruzi strain CL Brener]
 gb|EAN91507.1| electron-transfer-flavoprotein, alpha polypeptide, putative
           [Trypanosoma cruzi]
          Length = 321

 Score = 36.2 bits (82), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 9/113 (7%)

Query: 6   DEHMELVAKVVAK-----FISTGLLKHNIDSRGADTFLGEPVDNDTFAAVLSWMLSEGLI 60
           +E+  L+A VV       F  T     N+  R A      P+ + T     S  +   L+
Sbjct: 80  EEYAPLIASVVKDGYTHVFAGTSAFGKNVIPRAAAKADAMPISDVTEVKDDSTFVR--LM 137

Query: 61  HAGNVSRTINGVVFVSQAQLSAKGLAIVRQPLGGGETIEKRIEKADAGDKKDW 113
           +AGNV  T+  +  V  A +  +G +  R PL GG    K +E   A  K  W
Sbjct: 138 YAGNVVSTVRSLDPVKYATI--RGTSFERAPLDGGSAQTKEVEATKAEGKSKW 188