BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0064.0019.p         (125 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003694316.1| hypothetical protein Snov_2402 [Starkeya nov...    95   4e-18
ref|YP_002490216.1| hypothetical protein Mnod_8058 [Methylobacte...    77   6e-13
ref|YP_002289838.1| hypothetical protein OCAR_6864 [Oligotropha ...    56   2e-06
emb|CCC15584.1| permease for cytosine/purines, uracil, thiamine,...    34   6.6  

>ref|YP_003694316.1| hypothetical protein Snov_2402 [Starkeya novella DSM 506]
 gb|ADH89697.1| conserved hypothetical protein [Starkeya novella DSM 506]
          Length = 131

 Score = 94.7 bits (234), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 56/122 (45%), Positives = 76/122 (62%), Gaps = 7/122 (5%)

Query: 1   MPQLEPNLAGLAWFGLLWSVCCIGFLQLAGMYPL-----RGRAVLPVT--MTTIVWVMLL 53
           M  LEPN+  LAWF L  ++CC+GFL L+G +PL     RG+A  P    +   + ++L+
Sbjct: 1   MAALEPNVIALAWFALFSTLCCVGFLILSGSFPLSAAKERGQASSPALALLNGALMLVLV 60

Query: 54  AGTLAFALAELRWTTVVVVGGVLFLFLPGLFQALPEWWRDGRAGLRLSCCAMIAALALLV 113
             TLAF L ELR T+V+VV G+ FLF P  F+  PE W+DGRA L +   A + ALA L 
Sbjct: 61  GFTLAFGLIELRVTSVIVVAGLAFLFAPASFEIWPERWKDGRAVLAIMALAQMGALAALY 120

Query: 114 RV 115
           +V
Sbjct: 121 QV 122


>ref|YP_002490216.1| hypothetical protein Mnod_8058 [Methylobacterium nodulans ORS 2060]
 gb|ACL63049.1| hypothetical protein Mnod_8058 [Methylobacterium nodulans ORS 2060]
          Length = 128

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 49/123 (39%), Positives = 68/123 (55%), Gaps = 7/123 (5%)

Query: 1   MPQLEPNLAGLAWFGLLWSVCCIGFLQLAGMYPLRGRAVLP-------VTMTTIVWVMLL 53
           M  +EPN+  L WF +   V C+GF  L G +PL  R  L        +++  ++ V L 
Sbjct: 1   MDMVEPNVVALLWFTIFAGVTCLGFYVLTGAFPLETRPDLKRPLGLALLSINLLLLVALG 60

Query: 54  AGTLAFALAELRWTTVVVVGGVLFLFLPGLFQALPEWWRDGRAGLRLSCCAMIAALALLV 113
           AG++A+ +  LRWT++V+VGG  FLF PGLF   P  WRDG+AGL +      A L  L 
Sbjct: 61  AGSVAYGVEHLRWTSLVIVGGFAFLFAPGLFNVWPTKWRDGQAGLAIVLAGFGATLGALQ 120

Query: 114 RVA 116
            V 
Sbjct: 121 AVG 123


>ref|YP_002289838.1| hypothetical protein OCAR_6864 [Oligotropha carboxidovorans OM5]
 ref|YP_004632174.1| hypothetical protein OCA5_c12150 [Oligotropha carboxidovorans OM5]
 gb|ACI93973.1| hypothetical protein OCAR_6864 [Oligotropha carboxidovorans OM5]
 gb|AEI02357.1| hypothetical protein OCA4_c12150 [Oligotropha carboxidovorans OM4]
 gb|AEI05933.1| hypothetical protein OCA5_c12150 [Oligotropha carboxidovorans OM5]
          Length = 133

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 61/120 (50%), Gaps = 13/120 (10%)

Query: 1   MPQLEPNLAGLAWFGLLWSVCCIGFLQLAGMYPL------RGRAVLPVTMTTIVWVMLLA 54
           M  +EPN   L WF L  ++C I  L + GM+PL      R R+ L V +      +LLA
Sbjct: 1   MSSIEPNWLSLLWFTLFAAICGISLLIVTGMFPLGHDPEGRRRSGLTVLLVLGNAALLLA 60

Query: 55  ---GTLAFALAELRWTTVVVVGGVLFLFLPGLFQALPEWWRDGRAGLRLSCCAMIAALAL 111
              GT  +   ELRW+++V V G++ LF PGLF    E WR    G+R     ++   AL
Sbjct: 61  LAIGTGIYGYNELRWSSLVAVTGLIILFAPGLF----EEWRWPIGGIRTQLAVLVGVQAL 116


>emb|CCC15584.1| permease for cytosine/purines, uracil, thiamine, allantoin
           [Lactobacillus pentosus IG1]
          Length = 413

 Score = 34.3 bits (77), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 19/77 (24%), Positives = 44/77 (57%), Gaps = 4/77 (5%)

Query: 11  LAWFGLLWSVCCIGFLQLAGMYPLRGRAVLPVTMTTIVWVMLLAGTLAFALAELRWTTVV 70
           L WFG+  +VC   F+    ++ +     +P ++++++W +++  T  + +  +R+ T +
Sbjct: 85  LGWFGIQANVCGEAFVSFLKVFGVT----IPTSLSSLLWGLIMVTTAIYGIRVIRYLTYI 140

Query: 71  VVGGVLFLFLPGLFQAL 87
            V  ++ + L GL+QAL
Sbjct: 141 AVPYLVIVCLYGLYQAL 157