BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0064.0017.p         (111 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_002490218.1| hypothetical protein Mnod_8060 [Methylobacte...   123   1e-26
ref|YP_002289831.1| hypothetical protein OCAR_6857 [Oligotropha ...   118   4e-25
ref|YP_003694305.1| hypothetical protein Snov_2391 [Starkeya nov...   108   3e-22
ref|YP_134392.1| hypothetical protein pNG6146 [Haloarcula marism...    57   1e-06
ref|YP_002567622.1| hypothetical protein Hlac_3517 [Halorubrum l...    54   8e-06

>ref|YP_002490218.1| hypothetical protein Mnod_8060 [Methylobacterium nodulans ORS 2060]
 gb|ACL63051.1| hypothetical protein Mnod_8060 [Methylobacterium nodulans ORS 2060]
          Length = 96

 Score =  123 bits (308), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/96 (59%), Positives = 68/96 (70%)

Query: 10  MASYTGDRTIDGISVLVDGKPLSPHYDQLRLTEHGFEWSYEGPEPAQLAFALLYDHLHDA 69
           M  YTGDRTIDGI V VDG+PL         + +GFEWSYEGPEP+QLA+A+L DHL D 
Sbjct: 1   MKVYTGDRTIDGIVVTVDGEPLDDQTSTKCYSRNGFEWSYEGPEPSQLAYAILVDHLGDP 60

Query: 70  AAAKALHESFMRRVVANFDNEWELSSADLDEAVAVL 105
           A A  L + FMR VVANF NEWE++SAD+D  +  L
Sbjct: 61  AEAARLQDGFMRTVVANFQNEWEMTSADIDRVLRTL 96


>ref|YP_002289831.1| hypothetical protein OCAR_6857 [Oligotropha carboxidovorans OM5]
 ref|YP_004632181.1| hypothetical protein OCA5_c12220 [Oligotropha carboxidovorans OM5]
 gb|ACI93966.1| conserved hypothetical protein [Oligotropha carboxidovorans OM5]
 gb|AEI02364.1| hypothetical protein OCA4_c12220 [Oligotropha carboxidovorans OM4]
 gb|AEI05940.1| hypothetical protein OCA5_c12220 [Oligotropha carboxidovorans OM5]
          Length = 103

 Score =  118 bits (295), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 58/100 (58%), Positives = 74/100 (74%)

Query: 10  MASYTGDRTIDGISVLVDGKPLSPHYDQLRLTEHGFEWSYEGPEPAQLAFALLYDHLHDA 69
           M  Y GDRTIDG+ V VDG PLSP  D ++ +++G EW YEG  P QLAFALL DHL DA
Sbjct: 1   MKHYVGDRTIDGVQVSVDGVPLSPRTDVMQYSDNGIEWGYEGESPLQLAFALLMDHLGDA 60

Query: 70  AAAKALHESFMRRVVANFDNEWELSSADLDEAVAVLRSGQ 109
            AAKA   +FM+ VVANF NEWE++S D+ +A+A+L+ G+
Sbjct: 61  EAAKASSSAFMKSVVANFGNEWEMTSDDIAQALAILKGGK 100


>ref|YP_003694305.1| hypothetical protein Snov_2391 [Starkeya novella DSM 506]
 gb|ADH89686.1| conserved hypothetical protein [Starkeya novella DSM 506]
          Length = 98

 Score =  108 bits (270), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 54/98 (55%), Positives = 66/98 (67%), Gaps = 1/98 (1%)

Query: 10  MASYTGDRTIDGISVLVDGKPLSPHYDQLRLTEHGFEWSYEGPEPAQLAFALLYDHLHDA 69
           M +Y GDRTIDG++V VDG PL    D   ++  GFEWSYEG  PAQLA A+L DH   A
Sbjct: 1   MKTYRGDRTIDGVAVTVDGAPLPERTDIKEISRDGFEWSYEGVAPAQLALAILADHFGSA 60

Query: 70  AAAKALHESFMRRVVANFDNEWELSSADLDEAVAVLRS 107
           A A   ++ FMR VVANF NEWE ++AD+ EAV   R+
Sbjct: 61  ALALQNYDRFMRDVVANFGNEWEFTTADI-EAVLTARA 97


>ref|YP_134392.1| hypothetical protein pNG6146 [Haloarcula marismortui ATCC 43049]
 gb|AAV44686.1| unknown [Haloarcula marismortui ATCC 43049]
          Length = 228

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 61/114 (53%), Gaps = 13/114 (11%)

Query: 3   LQHREDPMASYTGDRTIDGISVLVD---GKPLSPHYDQLRLTEH---GFEWSYEGPEPAQ 56
           L +R D    Y G R IDG +V+++    + L+P    L L  H   G+EW Y G  PAQ
Sbjct: 18  LANRRDDSVEYVGFR-IDGQAVVLNLSEHQRLTPDR-SLDLVNHSPTGYEWGYAGSGPAQ 75

Query: 57  LAFALLYDHLHDAAAAKALHESFMRRVVANFDNE-----WELSSADLDEAVAVL 105
           LA  LL D+ +DA  A+  + +F  RV++  + +     W L+  ++D A+A +
Sbjct: 76  LACGLLLDYYNDAQVAREHYIAFRNRVISQLECDGPAACWHLTGEEIDAAMATI 129


>ref|YP_002567622.1| hypothetical protein Hlac_3517 [Halorubrum lacusprofundi ATCC
           49239]
 gb|ACM59025.1| hypothetical protein Hlac_3517 [Halorubrum lacusprofundi ATCC
           49239]
          Length = 202

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 8/104 (7%)

Query: 8   DPMASYTGDRTIDGISVLVDGKPLSPHYDQLRLTEH----GFEWSYEGPEPAQLAFALLY 63
           D    Y+ D T D I+ + DG+PL P  D   + EH    G  WSY G    QLA A+L 
Sbjct: 33  DSETVYSNDETADSIAPIADGEPLDPRTD---IEEHGQSGGCSWSYTGAGSQQLALAILA 89

Query: 64  DHLHDAAAAKALHESFMRRVVANFDNEWELSSADLDEAVAVLRS 107
            H  D   A+   + F    + + D+ W+L++ ++ + V ++ +
Sbjct: 90  -HATDPGVARRRAQGFAAVYIQSLDDGWKLTAEEVQKWVRIVEN 132