BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0064.0008.p (259 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769804.1| hypothetical protein blr3164 [Bradyrhizobium ja... 424 e-117 ref|NP_949297.1| hypothetical protein RPA3960 [Rhodopseudomonas ... 422 e-116 ref|YP_001993453.1| hypothetical protein Rpal_4482 [Rhodopseudom... 419 e-115 ref|YP_004110504.1| hypothetical protein Rpdx1_4219 [Rhodopseudo... 411 e-113 ref|YP_001205584.1| hypothetical protein BRADO3579 [Bradyrhizobi... 408 e-112 >ref|NP_769804.1| hypothetical protein blr3164 [Bradyrhizobium japonicum USDA 110] dbj|BAC48429.1| blr3164 [Bradyrhizobium japonicum USDA 110] Length = 265 Score = 424 bits (1091), Expect = e-117, Method: Compositional matrix adjust. Identities = 207/238 (86%), Positives = 219/238 (92%), Gaps = 1/238 (0%) Query: 1 MPSELRSPRLAVLIDADNASAKIADGLFEEIAKIGEASVRRIYGDFSNPRSKGWADILSK 60 MPSELRSPRLAVLIDADNASAKIADGLFEEIAKIGEASVRRIYGDFS+ RSKGWADILSK Sbjct: 1 MPSELRSPRLAVLIDADNASAKIADGLFEEIAKIGEASVRRIYGDFSSSRSKGWADILSK 60 Query: 61 HAIIPQQQFAYTTGKNASDITLVIDAMDLLHSGRFDGFCLVSSDSDFTRLAARIREHGID 120 HAIIPQQQFAYTTGKNASDITLVIDAMDLLHSGRFDGFCLVSSDSDFTRLAARIRE G+D Sbjct: 61 HAIIPQQQFAYTTGKNASDITLVIDAMDLLHSGRFDGFCLVSSDSDFTRLAARIREQGVD 120 Query: 121 VFGFGEQKTPESFRQACRRFVYTENLRGGAPSNQDAAVRAQPLQPPEAATPIIKKVISQM 180 VFGFGEQKTPESFRQACRRFVYTENL +NQDAA R+ LQP +AATPIIKKVI+QM Sbjct: 121 VFGFGEQKTPESFRQACRRFVYTENLLAAPTTNQDAAARSTSLQPLDAATPIIKKVITQM 180 Query: 181 ASEDGWVTLGEVGRQLANFASDFDQRTYGFRTLGELVRRTNAFEI-ESKGGTMRIRIK 237 SEDGWV LGEVGRQLAN ASDFD RT+GFR L +LVR+TN+FEI ESKG +MRIR+K Sbjct: 181 ESEDGWVALGEVGRQLANLASDFDPRTFGFRKLSDLVRKTNSFEIDESKGRSMRIRVK 238 >ref|NP_949297.1| hypothetical protein RPA3960 [Rhodopseudomonas palustris CGA009] emb|CAE29401.1| conserved unknown protein [Rhodopseudomonas palustris CGA009] Length = 267 Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust. Identities = 203/253 (80%), Positives = 226/253 (89%), Gaps = 1/253 (0%) Query: 1 MPSELRSPRLAVLIDADNASAKIADGLFEEIAKIGEASVRRIYGDFSNPRSKGWADILSK 60 MPSE RSPRLAVLIDADNASAKIADGLFEEIAKIGEASVRRIYGDFS PRSKGWADIL+K Sbjct: 1 MPSEHRSPRLAVLIDADNASAKIADGLFEEIAKIGEASVRRIYGDFSTPRSKGWADILAK 60 Query: 61 HAIIPQQQFAYTTGKNASDITLVIDAMDLLHSGRFDGFCLVSSDSDFTRLAARIREHGID 120 HAIIPQQQFAYTTGKNASDITLVIDAMDLLHSGRF+GFCLVSSDSDFTRLA+RIRE G+D Sbjct: 61 HAIIPQQQFAYTTGKNASDITLVIDAMDLLHSGRFEGFCLVSSDSDFTRLASRIREQGVD 120 Query: 121 VFGFGEQKTPESFRQACRRFVYTENLRGGAPSNQDAAVRAQPLQPPEAATPIIKKVISQM 180 VFGFGEQKTPESFRQACRRFVYTENL GA ++ A A+PLQPP AATPII++VI QM Sbjct: 121 VFGFGEQKTPESFRQACRRFVYTENLIAGAADSKGTASPAKPLQPPSAATPIIERVIKQM 180 Query: 181 ASEDGWVTLGEVGRQLANFASDFDQRTYGFRTLGELVRRTNAFEIESKGG-TMRIRIKPS 239 SEDGWV+LGEVG+ L+N ASDFD RT+GFR L +LVR+TNAFE+E + G +MRIR+KP+ Sbjct: 181 ESEDGWVSLGEVGKHLSNLASDFDPRTFGFRKLSDLVRKTNAFELEQQNGHSMRIRLKPT 240 Query: 240 AAPPPRRRAPRRR 252 AP + +PR+R Sbjct: 241 GAPAAKTTSPRKR 253 >ref|YP_001993453.1| hypothetical protein Rpal_4482 [Rhodopseudomonas palustris TIE-1] gb|ACF02978.1| conserved hypothetical protein [Rhodopseudomonas palustris TIE-1] Length = 267 Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust. Identities = 202/253 (79%), Positives = 225/253 (88%), Gaps = 1/253 (0%) Query: 1 MPSELRSPRLAVLIDADNASAKIADGLFEEIAKIGEASVRRIYGDFSNPRSKGWADILSK 60 M SE RSPRLAVLIDADNASAKIADGLFEEIAKIGEASVRRIYGDFS PRSKGWADIL+K Sbjct: 1 MLSEHRSPRLAVLIDADNASAKIADGLFEEIAKIGEASVRRIYGDFSTPRSKGWADILAK 60 Query: 61 HAIIPQQQFAYTTGKNASDITLVIDAMDLLHSGRFDGFCLVSSDSDFTRLAARIREHGID 120 HAIIPQQQFAYTTGKNASDITLVIDAMDLLHSGRF+GFCLVSSDSDFTRLA+RIRE G+D Sbjct: 61 HAIIPQQQFAYTTGKNASDITLVIDAMDLLHSGRFEGFCLVSSDSDFTRLASRIREQGVD 120 Query: 121 VFGFGEQKTPESFRQACRRFVYTENLRGGAPSNQDAAVRAQPLQPPEAATPIIKKVISQM 180 VFGFGEQKTPESFRQACRRFVYTENL GA ++ A A+PLQPP AATPII++VI QM Sbjct: 121 VFGFGEQKTPESFRQACRRFVYTENLVAGAADSKGTASPAKPLQPPSAATPIIERVIKQM 180 Query: 181 ASEDGWVTLGEVGRQLANFASDFDQRTYGFRTLGELVRRTNAFEIESKGG-TMRIRIKPS 239 SEDGWV+LGEVG+ L+N ASDFD RT+GFR L +LVR+TNAFE+E + G +MRIR+KP+ Sbjct: 181 ESEDGWVSLGEVGKHLSNLASDFDPRTFGFRKLSDLVRKTNAFELEQQNGHSMRIRLKPT 240 Query: 240 AAPPPRRRAPRRR 252 AP + +PR+R Sbjct: 241 GAPAAKTTSPRKR 253 >ref|YP_004110504.1| hypothetical protein Rpdx1_4219 [Rhodopseudomonas palustris DX-1] gb|ADU45771.1| hypothetical protein Rpdx1_4219 [Rhodopseudomonas palustris DX-1] Length = 266 Score = 411 bits (1057), Expect = e-113, Method: Compositional matrix adjust. Identities = 200/243 (82%), Positives = 219/243 (90%), Gaps = 1/243 (0%) Query: 1 MPSELRSPRLAVLIDADNASAKIADGLFEEIAKIGEASVRRIYGDFSNPRSKGWADILSK 60 MPSE RSPRLAVLIDADNASAKIADGLFEEIAKIGEASVRRIYGDFS RSKGWADIL+K Sbjct: 1 MPSEPRSPRLAVLIDADNASAKIADGLFEEIAKIGEASVRRIYGDFSTQRSKGWADILAK 60 Query: 61 HAIIPQQQFAYTTGKNASDITLVIDAMDLLHSGRFDGFCLVSSDSDFTRLAARIREHGID 120 HAIIPQQQFAYTTGKNASDITLVIDAMDLLHSGRFDGFCLVSSDSDFTRLA+RIRE G+D Sbjct: 61 HAIIPQQQFAYTTGKNASDITLVIDAMDLLHSGRFDGFCLVSSDSDFTRLASRIREQGVD 120 Query: 121 VFGFGEQKTPESFRQACRRFVYTENLRGGAPSNQDAAVRAQPLQPPEAATPIIKKVISQM 180 VFGFGEQKTPESFRQACRRFVYTENL GA ++ A A+PLQPP AATPII++VI QM Sbjct: 121 VFGFGEQKTPESFRQACRRFVYTENLIAGAADSKGTASAAKPLQPPSAATPIIERVIKQM 180 Query: 181 ASEDGWVTLGEVGRQLANFASDFDQRTYGFRTLGELVRRTNAFEIESKGG-TMRIRIKPS 239 SEDGWV+LGEVG++L+N ASDFD RT+GFR L +LVR+TNAFE+E + G +MRIR+KP Sbjct: 181 ESEDGWVSLGEVGKRLSNLASDFDPRTFGFRKLSDLVRKTNAFELEQQNGHSMRIRLKPI 240 Query: 240 AAP 242 AP Sbjct: 241 DAP 243 >ref|YP_001205584.1| hypothetical protein BRADO3579 [Bradyrhizobium sp. ORS 278] emb|CAL77358.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278] Length = 263 Score = 408 bits (1049), Expect = e-112, Method: Compositional matrix adjust. Identities = 204/263 (77%), Positives = 225/263 (85%), Gaps = 6/263 (2%) Query: 1 MPSELRSPRLAVLIDADNASAKIADGLFEEIAKIGEASVRRIYGDFSNPRSKGWADILSK 60 MPSE RSPRLAVLIDADNASAKI DGLFEEIAKIGEASVRRIYGDFS+PRSK WAD L++ Sbjct: 1 MPSEPRSPRLAVLIDADNASAKIVDGLFEEIAKIGEASVRRIYGDFSSPRSKPWADTLAR 60 Query: 61 HAIIPQQQFAYTTGKNASDITLVIDAMDLLHSGRFDGFCLVSSDSDFTRLAARIREHGID 120 HAI+PQQQFAYTTGKNASDITLVIDAMDLLHSGRFDGFCLVSSDSDFTRLAARIRE GID Sbjct: 61 HAIVPQQQFAYTTGKNASDITLVIDAMDLLHSGRFDGFCLVSSDSDFTRLAARIREQGID 120 Query: 121 VFGFGEQKTPESFRQACRRFVYTENLRGGAPSNQDA--AVRAQPLQPPEAATPIIKKVIS 178 VFGFGEQKTPESFRQACRRF+YTENLR A ++DA A +PLQP AATP+IKKVI+ Sbjct: 121 VFGFGEQKTPESFRQACRRFIYTENLRSDAAGSKDADSAAAPKPLQPISAATPVIKKVIT 180 Query: 179 QMASEDGWVTLGEVGRQLANFASDFDQRTYGFRTLGELVRRTNAFEIESK---GGTMRIR 235 QM SEDGWV LGEVG+QL+N SDFD RTYG R L +LVR+T AFEIE + GG++RIR Sbjct: 181 QMESEDGWVALGEVGKQLSNLVSDFDPRTYGCRKLSDLVRKTGAFEIEEQSKGGGSVRIR 240 Query: 236 IKPSAAPPPRRRAPR-RRADQKP 257 +K ++ P PR RA R +R KP Sbjct: 241 VKAASTPQPRARATRGQREAAKP 263