BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0064.0001.p (349 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769813.1| d-3-phosphoglycerate dehydrogenase [Bradyrhizob... 575 e-162 ref|YP_001206851.1| putative D-3-phosphoglycerate dehydrogenase ... 561 e-158 ref|YP_001239150.1| putative D-3-phosphoglycerate dehydrogenase ... 528 e-148 ref|YP_004619269.1| D-3-phosphoglycerate dehydrogenase [Ramlibac... 338 7e-91 ref|ZP_06687691.1| D-3-phosphoglycerate dehydrogenase [Achromoba... 332 8e-89 >ref|NP_769813.1| d-3-phosphoglycerate dehydrogenase [Bradyrhizobium japonicum USDA 110] dbj|BAC48438.1| blr3173 [Bradyrhizobium japonicum USDA 110] Length = 360 Score = 575 bits (1483), Expect = e-162, Method: Compositional matrix adjust. Identities = 287/349 (82%), Positives = 316/349 (90%) Query: 1 MTVNNKRVFYVKYLAHEIYVDILKKRPDVRLDRLENETPEATFAPVLADAHAYQIGAARD 60 M+VNNKRVFYVKYLA+ IY+DILK RPDVRLDR+ENE+PE +AP+++ AH YQIGAARD Sbjct: 12 MSVNNKRVFYVKYLANPIYIDILKARPDVRLDRIENESPEDFYAPIVSAAHVYQIGAARD 71 Query: 61 ELAPHFHAHAELLKRAPNLLIVSSNGAGFDPVDVDACTAAGVLVVNQSGGNANSVAEHAL 120 ELAPHFH A LKR PNLL+VSSNGAGFDPVDV+ACT AGVLVVNQSGGNA+SVAEHAL Sbjct: 72 ELAPHFHVDAAFLKRTPNLLLVSSNGAGFDPVDVEACTDAGVLVVNQSGGNAHSVAEHAL 131 Query: 121 GMMLTLSKRIIQSDRRLRREANVNRNDLIGNELKEKTVGIVGLGNVGRRIAELCRGLLHM 180 MMLTLSKRIIQSDRRLRRE +VNRNDL+GNE++ KTVGI+GLGNVGRRIA LC GLL M Sbjct: 132 AMMLTLSKRIIQSDRRLRRERDVNRNDLVGNEVEHKTVGIIGLGNVGRRIAALCNGLLGM 191 Query: 181 KVIAYDPYLTVDEMAKRGGEKVELDDLLRRADFVSISCPLDNKSRGMIGAREFALMQPHA 240 KV+AYDPYLT + MA+RGGEKVELD+LLRRADFVSISCPL+ SR MI REFALMQPHA Sbjct: 192 KVLAYDPYLTAEVMAERGGEKVELDELLRRADFVSISCPLNKGSRNMISVREFALMQPHA 251 Query: 241 YFVTTARGFIHDEKALEEALRDKRIAGAGLDVWAKEPPPPDHPLLQFDNVLASPHTAGVT 300 YF+TTARGFIHDE AL +ALRDKRIAGAGLDVW+KEPPPP+HPLLQFDNVLASPHTAGVT Sbjct: 252 YFITTARGFIHDEDALLQALRDKRIAGAGLDVWSKEPPPPEHPLLQFDNVLASPHTAGVT 311 Query: 301 REARINMGRIAAEQILDALDGKRPPRIINPEVWPVYARRFEKAFGFMPG 349 EAR NMGRIAAEQ+LD LDGKRPPRIINPEVWP YA RF++AFG MPG Sbjct: 312 TEARQNMGRIAAEQVLDTLDGKRPPRIINPEVWPRYAERFKQAFGVMPG 360 >ref|YP_001206851.1| putative D-3-phosphoglycerate dehydrogenase (PGDH) [Bradyrhizobium sp. ORS 278] emb|CAL78634.1| putative D-3-phosphoglycerate dehydrogenase (PGDH) [Bradyrhizobium sp. ORS 278] Length = 349 Score = 561 bits (1446), Expect = e-158, Method: Compositional matrix adjust. Identities = 277/348 (79%), Positives = 308/348 (88%) Query: 1 MTVNNKRVFYVKYLAHEIYVDILKKRPDVRLDRLENETPEATFAPVLADAHAYQIGAARD 60 M N+KRVFYVKYLAH I+ ++L RPDVRLDRLENE+ EA AP+LA AHAYQIGAARD Sbjct: 1 MAANSKRVFYVKYLAHPIFSELLAARPDVRLDRLENESAEADTAPILAAAHAYQIGAARD 60 Query: 61 ELAPHFHAHAELLKRAPNLLIVSSNGAGFDPVDVDACTAAGVLVVNQSGGNANSVAEHAL 120 ELAP FH A LL+RAPNLLIVSSNGAG+DPVDV+ACTAAGVLVVNQSGGNA+SVAEH L Sbjct: 61 ELAPRFHVDAYLLRRAPNLLIVSSNGAGYDPVDVEACTAAGVLVVNQSGGNAHSVAEHTL 120 Query: 121 GMMLTLSKRIIQSDRRLRREANVNRNDLIGNELKEKTVGIVGLGNVGRRIAELCRGLLHM 180 GMMLTLSKRIIQSDRRLRR+ +VNRNDLIGNE++ +TVGIVGLGNVGRR+AELCRGLL M Sbjct: 121 GMMLTLSKRIIQSDRRLRRDRDVNRNDLIGNEVQGRTVGIVGLGNVGRRVAELCRGLLGM 180 Query: 181 KVIAYDPYLTVDEMAKRGGEKVELDDLLRRADFVSISCPLDNKSRGMIGAREFALMQPHA 240 V+AYDPYL+ +E+A RG EKVELDDL+RRADFVS++CPL +SRGMIGA EFALMQP A Sbjct: 181 TVLAYDPYLSAEEIAARGAEKVELDDLMRRADFVSVNCPLTRESRGMIGAAEFALMQPSA 240 Query: 241 YFVTTARGFIHDEKALEEALRDKRIAGAGLDVWAKEPPPPDHPLLQFDNVLASPHTAGVT 300 YFVTTARGFIHDE AL AL ++RIAGAGLDVW+KEPPPPDHPLLQ DNVLASPHTAGVT Sbjct: 241 YFVTTARGFIHDEDALLAALAERRIAGAGLDVWSKEPPPPDHPLLQLDNVLASPHTAGVT 300 Query: 301 REARINMGRIAAEQILDALDGKRPPRIINPEVWPVYARRFEKAFGFMP 348 REAR NMGRIAAEQ+L ALDG RPPR+INPE WP Y+ RF +AFG P Sbjct: 301 REARQNMGRIAAEQLLAALDGSRPPRLINPEAWPRYSARFREAFGVTP 348 >ref|YP_001239150.1| putative D-3-phosphoglycerate dehydrogenase (PGDH) [Bradyrhizobium sp. BTAi1] gb|ABQ35244.1| putative D-3-phosphoglycerate dehydrogenase (PGDH) [Bradyrhizobium sp. BTAi1] Length = 349 Score = 528 bits (1361), Expect = e-148, Method: Compositional matrix adjust. Identities = 274/348 (78%), Positives = 307/348 (88%) Query: 1 MTVNNKRVFYVKYLAHEIYVDILKKRPDVRLDRLENETPEATFAPVLADAHAYQIGAARD 60 M N+KRVFYVKYLAH I+ + L RPDVRLDRL+N+TP+ AP++A AHAYQIGAARD Sbjct: 1 MAANSKRVFYVKYLAHPIFSERLAARPDVRLDRLDNDTPDPEAAPIMAAAHAYQIGAARD 60 Query: 61 ELAPHFHAHAELLKRAPNLLIVSSNGAGFDPVDVDACTAAGVLVVNQSGGNANSVAEHAL 120 ELAP FH A+LL+RAPNLLIVSSNGAG+DPVDVDACT AGVLVVNQSGGNA+SVAEH L Sbjct: 61 ELAPRFHVDADLLRRAPNLLIVSSNGAGYDPVDVDACTRAGVLVVNQSGGNAHSVAEHTL 120 Query: 121 GMMLTLSKRIIQSDRRLRREANVNRNDLIGNELKEKTVGIVGLGNVGRRIAELCRGLLHM 180 GMMLTLSKRIIQSDRRLRRE +VNRNDLIGNE++ +T+GIVGLGNVGRR+AELCRGLL M Sbjct: 121 GMMLTLSKRIIQSDRRLRRERDVNRNDLIGNEVQGRTIGIVGLGNVGRRVAELCRGLLGM 180 Query: 181 KVIAYDPYLTVDEMAKRGGEKVELDDLLRRADFVSISCPLDNKSRGMIGAREFALMQPHA 240 V+AYDPYL+ +E+A RG EKVEL DL+RR+DFVSI+CPL SRGMIG REFALMQPHA Sbjct: 181 TVLAYDPYLSPEEIAARGAEKVELADLMRRSDFVSINCPLTRDSRGMIGHREFALMQPHA 240 Query: 241 YFVTTARGFIHDEKALEEALRDKRIAGAGLDVWAKEPPPPDHPLLQFDNVLASPHTAGVT 300 YF+TTARGFIHDE AL ALRD+RIAGAGLDVWAKEPPPP+HPLLQFDNVLASPHTAGVT Sbjct: 241 YFITTARGFIHDEDALLAALRDQRIAGAGLDVWAKEPPPPEHPLLQFDNVLASPHTAGVT 300 Query: 301 REARINMGRIAAEQILDALDGKRPPRIINPEVWPVYARRFEKAFGFMP 348 REAR NMG+IAAEQ+L ALDG+RPPR+INPE WP Y+ RF FG P Sbjct: 301 REARQNMGQIAAEQLLAALDGRRPPRLINPEAWPRYSDRFRATFGVTP 348 >ref|YP_004619269.1| D-3-phosphoglycerate dehydrogenase [Ramlibacter tataouinensis TTB310] gb|AEG93250.1| D-3-phosphoglycerate dehydrogenase (phosphoglycerate dehydrogenase)-like protein [Ramlibacter tataouinensis TTB310] Length = 361 Score = 338 bits (868), Expect = 7e-91, Method: Compositional matrix adjust. Identities = 175/339 (51%), Positives = 227/339 (66%), Gaps = 1/339 (0%) Query: 1 MTVNNKRVFYVKYLAHEIYVDILKKRPDVRLDRLENETPEATFAPVLADAHAYQIGAARD 60 MT + +RV + L + P V + A VL+ AH Y + AA+D Sbjct: 18 MTTSPRRVVRSDLWIDAAFDQRLAREPGVSVGIFPVRGHPAAAWDVLSGAHVYHVSAAKD 77 Query: 61 ELAPHFHAHAELLKRAPNLLIVSSNGAGFDPVDVDACTAAGVLVVNQSGGNANSVAEHAL 120 EL P + A A L+ R P+LL VSS+GAG+D VDV ACTAAGV+VVNQ+G NA SVAEH L Sbjct: 78 ELPPEWFARAGLVARCPDLLCVSSSGAGYDTVDVAACTAAGVIVVNQAGANAPSVAEHTL 137 Query: 121 GMMLTLSKRIIQSDRRLRREANVNRNDLIGNELKEKTVGIVGLGNVGRRIAELCRGLLHM 180 G+ML +S+R+++SDRRLRRE +R D++G+E++ KT+G+VG+G+VG R+A L R M Sbjct: 138 GLMLGVSRRMLESDRRLRRERGFSREDVMGHEIRRKTLGLVGIGHVGTRVASLARAF-GM 196 Query: 181 KVIAYDPYLTVDEMAKRGGEKVELDDLLRRADFVSISCPLDNKSRGMIGAREFALMQPHA 240 +VIA DP L+ +E+ +RG V L +LL ++DFVS+ CP D + +I A A M+ A Sbjct: 197 EVIATDPLLSAEEITRRGARAVSLPELLAQSDFVSLHCPRDASTLKLIDAAALARMKKGA 256 Query: 241 YFVTTARGFIHDEKALEEALRDKRIAGAGLDVWAKEPPPPDHPLLQFDNVLASPHTAGVT 300 ++TARG IHDE AL EALR IAGAGLDVW +EPPP DHPLL DNV A+ HTAGVT Sbjct: 257 ILISTARGGIHDEAALVEALRSGHIAGAGLDVWDREPPPLDHPLLAMDNVFATFHTAGVT 316 Query: 301 REARINMGRIAAEQILDALDGKRPPRIINPEVWPVYARR 339 EAR + +AAEQI L G RPPR+INPE WP Y +R Sbjct: 317 HEARRAVAGMAAEQIAGLLAGGRPPRLINPEAWPAYEKR 355 >ref|ZP_06687691.1| D-3-phosphoglycerate dehydrogenase [Achromobacter piechaudii ATCC 43553] gb|EFF75456.1| D-3-phosphoglycerate dehydrogenase [Achromobacter piechaudii ATCC 43553] Length = 357 Score = 332 bits (850), Expect = 8e-89, Method: Compositional matrix adjust. Identities = 163/335 (48%), Positives = 227/335 (67%), Gaps = 1/335 (0%) Query: 6 KRVFYVKYLAHEIYVDILKKRPDVRLDRLENETPEATFAPVLADAHAYQIGAARDELAPH 65 KR+ + + ++ +++ +PD+ L L +A L AHAY + AA+DEL Sbjct: 13 KRLCRLDLWLNPVFDEMIGAQPDIALSVLPARGDDARTLAGLRSAHAYHVSAAKDELPRQ 72 Query: 66 FHAHAELLKRAPNLLIVSSNGAGFDPVDVDACTAAGVLVVNQSGGNANSVAEHALGMMLT 125 + +AEL+ P+L+ VSS GAG+D VDV ACTAAG+ VVNQ+GGNA SVAEH ++L Sbjct: 73 WFVNAELIAECPDLVCVSSGGAGYDTVDVPACTAAGIAVVNQAGGNAASVAEHTYALLLA 132 Query: 126 LSKRIIQSDRRLRREANVNRNDLIGNELKEKTVGIVGLGNVGRRIAELCRGLLHMKVIAY 185 + +R+++S +RLR + R DL+G+E+ +G+VG+G +G R+A + +G M+VIA+ Sbjct: 133 VQRRVVESHQRLRHDTGFTREDLMGHEIHGTVIGLVGIGQIGSRVARIAQGF-GMRVIAH 191 Query: 186 DPYLTVDEMAKRGGEKVELDDLLRRADFVSISCPLDNKSRGMIGAREFALMQPHAYFVTT 245 DP L D + RG E V L DLL +AD VS+ CPLD +RGMI AR FA M+P A F++T Sbjct: 192 DPLLDADTIRARGAEPVSLPDLLGQADVVSLHCPLDASTRGMIDARAFAAMKPQAVFIST 251 Query: 246 ARGFIHDEKALEEALRDKRIAGAGLDVWAKEPPPPDHPLLQFDNVLASPHTAGVTREARI 305 ARG IHDE AL +ALR + GAGLDVW +EPPP D PLL NV+A+ HTAGVT EAR Sbjct: 252 ARGGIHDEAALYDALRAGHLRGAGLDVWQQEPPPADTPLLALPNVVATFHTAGVTHEARR 311 Query: 306 NMGRIAAEQILDALDGKRPPRIINPEVWPVYARRF 340 N+ R +A+Q++ L G+RPP+++NPEVWPV + R Sbjct: 312 NVARSSAQQLMAMLRGERPPQLVNPEVWPVASARI 346