BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0063.0007.p (165 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_880752.1| putative dioxygenase component [Bordetella pert... 199 1e-49 ref|NP_885026.1| putative dioxygenase component [Bordetella para... 199 1e-49 ref|ZP_06848098.1| beta subunit of hydroxylase component of benz... 171 3e-41 ref|YP_884201.1| beta subunit of hydroxylase component of benzoa... 169 2e-40 ref|ZP_08120556.1| beta subunit of hydroxylase component of benz... 163 8e-39 >ref|NP_880752.1| putative dioxygenase component [Bordetella pertussis Tohama I] emb|CAE42370.1| putative dioxygenase component [Bordetella pertussis Tohama I] gb|AEE67367.1| putative dioxygenase component [Bordetella pertussis CS] Length = 175 Score = 199 bits (506), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 94/157 (59%), Positives = 119/157 (75%), Gaps = 2/157 (1%) Query: 9 TLMSAITAFLYREARLQDEHQYEAWEKLWTDDGVYWVPANGADIDPERQMSIIYDNRSRI 68 TL ++ FLY EARLQD H Y+ WE LW DD +YW+PANG DIDPE++MS+IYDNRSRI Sbjct: 21 TLHHRVSQFLYHEARLQDTHDYQGWESLWEDDAIYWIPANGDDIDPEQKMSVIYDNRSRI 80 Query: 69 ALRVRQLMTGKHFTQTPQSNLRRLISNIELMDEQPDDGDIAVASNSLIFESSLRDDTLWA 128 +R+ QL+TG+ TQTP+S L RLISNIE++D ++ +N LI+E +LR +T WA Sbjct: 81 RVRIEQLLTGRRHTQTPRSALARLISNIEIVDVA--GQEVTALANVLIYEDNLRGETHWA 138 Query: 129 ARNEYRLRHVDGELRMAAKKVILVNNAKAIYTLSFLV 165 ARNEYRLR VDG R+ KK+ LVN+AK I+TLSFLV Sbjct: 139 ARNEYRLRLVDGAFRLVRKKIALVNSAKPIFTLSFLV 175 >ref|NP_885026.1| putative dioxygenase component [Bordetella parapertussis 12822] ref|NP_889683.1| dioxygenase [Bordetella bronchiseptica RB50] emb|CAE38118.1| putative dioxygenase component [Bordetella parapertussis] emb|CAE33639.1| putative dioxygenase component [Bordetella bronchiseptica RB50] Length = 175 Score = 199 bits (506), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 94/157 (59%), Positives = 118/157 (75%), Gaps = 2/157 (1%) Query: 9 TLMSAITAFLYREARLQDEHQYEAWEKLWTDDGVYWVPANGADIDPERQMSIIYDNRSRI 68 TL ++ FLY EARLQD H Y+ WE LW DD +YW+PANG DIDPE++MS+IYDNRSRI Sbjct: 21 TLHHRVSQFLYHEARLQDTHDYQGWESLWEDDAIYWIPANGDDIDPEQKMSVIYDNRSRI 80 Query: 69 ALRVRQLMTGKHFTQTPQSNLRRLISNIELMDEQPDDGDIAVASNSLIFESSLRDDTLWA 128 +R+ QL+TG+ TQTP+S L RLISNIE++D ++ +N LI+E +LR +T WA Sbjct: 81 RVRIEQLLTGRRHTQTPRSALARLISNIEIVDVAGQ--EVTALANVLIYEDNLRGETHWA 138 Query: 129 ARNEYRLRHVDGELRMAAKKVILVNNAKAIYTLSFLV 165 ARNEYRLR VDG R+ KK+ LVN AK I+TLSFLV Sbjct: 139 ARNEYRLRLVDGAFRLVRKKIALVNGAKPIFTLSFLV 175 >ref|ZP_06848098.1| beta subunit of hydroxylase component of benzoate 1,2-dioxygenase [Mycobacterium parascrofulaceum ATCC BAA-614] gb|EFG78553.1| beta subunit of hydroxylase component of benzoate 1,2-dioxygenase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 176 Score = 171 bits (434), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 83/155 (53%), Positives = 107/155 (69%), Gaps = 4/155 (2%) Query: 14 ITAFLYREARLQDEHQYEAWEKLWTDDGVYWVPANGADIDPERQMSIIYDNRSRIALRVR 73 + FLYREAR DE Y+AWE LWTDD +YWVP D DP R+MS+IYDNRSRIA R++ Sbjct: 23 VEQFLYREARYADESDYDAWEALWTDDALYWVPVASTD-DPLREMSVIYDNRSRIATRLK 81 Query: 74 QLMTGKHFTQTPQSNLRRLISNIELMDEQPDDG---DIAVASNSLIFESSLRDDTLWAAR 130 Q+ TGK + Q P SNLRRL+SNIE++ QP+ D+ V +N ++ ES R + LW R Sbjct: 82 QVRTGKRYAQAPPSNLRRLLSNIEILGTQPNPSGGVDLEVGANFMVLESRARGNHLWGGR 141 Query: 131 NEYRLRHVDGELRMAAKKVILVNNAKAIYTLSFLV 165 YR+R +DGELR+ KKV LV+ + I TL FL+ Sbjct: 142 VTYRVRRLDGELRLVYKKVDLVDKDRPIPTLGFLI 176 >ref|YP_884201.1| beta subunit of hydroxylase component of benzoate 1,2-dioxygenase [Mycobacterium avium 104] gb|ABK64835.1| beta subunit of hydroxylase component of benzoate 1,2-dioxygenase [Mycobacterium avium 104] Length = 178 Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 78/155 (50%), Positives = 107/155 (69%), Gaps = 3/155 (1%) Query: 14 ITAFLYREARLQDEHQYEAWEKLWTDDGVYWVPANGADIDPERQMSIIYDNRSRIALRVR 73 + F+YREAR DE+ Y+ WE LWTDD +YWVPA DP R+MS+I+DNRSRI+ R++ Sbjct: 24 VEQFVYREARYADENDYDRWEALWTDDALYWVPAGPDTADPMRRMSVIFDNRSRISTRLK 83 Query: 74 QLMTGKHFTQTPQSNLRRLISNIELMDEQPDDG---DIAVASNSLIFESSLRDDTLWAAR 130 Q+ TG+ + Q P S++RRL++NIE + +P+ G D+ V +N + ES RD LW R Sbjct: 84 QVRTGRRYAQAPPSHVRRLVTNIEWLGGRPNPGGGADLEVGANFMALESRARDSHLWGGR 143 Query: 131 NEYRLRHVDGELRMAAKKVILVNNAKAIYTLSFLV 165 YR+R V ELR+A KKV+LV+N K I TL FL+ Sbjct: 144 TTYRIRRVGDELRLAYKKVVLVDNDKPIPTLGFLI 178 >ref|ZP_08120556.1| beta subunit of hydroxylase component of benzoate 1,2-dioxygenase [Pseudonocardia sp. P1] Length = 164 Score = 163 bits (412), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 80/155 (51%), Positives = 103/155 (66%), Gaps = 1/155 (0%) Query: 11 MSAITAFLYREARLQDEHQYEAWEKLWTDDGVYWVPANGADIDPERQMSIIYDNRSRIAL 70 + + FLYREARL DEH+Y+ WE LWTDD +YWVPAN D D MSII+DNRSRI+ Sbjct: 11 LRTVEQFLYREARLADEHRYDEWESLWTDDALYWVPANDDDADRMAMMSIIHDNRSRIST 70 Query: 71 RVRQLMTGKHFTQTPQSNLRRLISNIELMDEQPDDGDIAVASNSLIFESSLRDDTLWAAR 130 R+RQL TG+ Q P S LRR+ISN+E+ + + GD+ V +N L+ ES R WA R Sbjct: 71 RIRQLHTGRRHAQVPHSRLRRMISNVEI-EGHTEGGDVIVGANFLVVESRERGTEFWAGR 129 Query: 131 NEYRLRHVDGELRMAAKKVILVNNAKAIYTLSFLV 165 Y LR + +A KKV LV+NA+ I TL+FL+ Sbjct: 130 CTYHLRLSETGYALARKKVALVDNARPIATLAFLI 164