BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0062.0009.p (385 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001766784.1| integrase catalytic region [Methylobacterium... 262 7e-68 ref|YP_002419918.1| integrase catalytic subunit [Methylobacteriu... 256 5e-66 ref|YP_001681975.1| integrase catalytic subunit [Caulobacter sp.... 249 7e-64 ref|YP_001682469.1| integrase catalytic subunit [Caulobacter sp.... 249 7e-64 ref|YP_001683570.1| integrase catalytic subunit [Caulobacter sp.... 248 1e-63 >ref|YP_001766784.1| integrase catalytic region [Methylobacterium radiotolerans JCM 2831] ref|YP_001766841.1| integrase catalytic region [Methylobacterium radiotolerans JCM 2831] ref|YP_001752069.1| integrase catalytic region [Methylobacterium radiotolerans JCM 2831] ref|YP_001753083.1| integrase catalytic subunit [Methylobacterium radiotolerans JCM 2831] ref|YP_001755242.1| integrase catalytic subunit [Methylobacterium radiotolerans JCM 2831] gb|ACB22400.1| Integrase catalytic region [Methylobacterium radiotolerans JCM 2831] gb|ACB24559.1| Integrase catalytic region [Methylobacterium radiotolerans JCM 2831] gb|ACB27982.1| Integrase catalytic region [Methylobacterium radiotolerans JCM 2831] gb|ACB28039.1| Integrase catalytic region [Methylobacterium radiotolerans JCM 2831] gb|ACB28399.1| Integrase catalytic region [Methylobacterium radiotolerans JCM 2831] Length = 286 Score = 262 bits (670), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 126/198 (63%), Positives = 156/198 (78%) Query: 1 MRFRFIEDRRADYPVTLLCDVLGVSPAGYYAWRSRPESRRSAANRDLVDDIRRVHRDTRG 60 M F FIE +PV L+C VLGVSP+G+Y WRSRPES RSA+NR L+DD+RR+H Sbjct: 1 MTFAFIEQHARTWPVRLMCRVLGVSPSGFYGWRSRPESARSASNRQLLDDVRRIHAAHHR 60 Query: 61 RYGSPRIHVELKAQGRGASRGRIERLMRRHGIRAIMARPRRVRTTDSRHDLPIAPNLLDR 120 RYG+PR+H L+A+GR SRGR+ERLMRRHGIRA+ R R TTDSRHDLPIAPNLL + Sbjct: 61 RYGAPRVHAALRAEGRSVSRGRVERLMRRHGIRALAGRRFRPCTTDSRHDLPIAPNLLKQ 120 Query: 121 NFIATAPNQIWLADITYIETDQGWLYLAAVMDLYSRRIVGWAMAEHLRADLPLAALRMAI 180 +F A P+ +WLADITY+ T +GWLYLAAV+DL +R+IVGW+M +H+RA+L +AAL MA Sbjct: 121 DFSAARPDTVWLADITYLPTGEGWLYLAAVLDLATRKIVGWSMRDHMRAELSVAALMMAA 180 Query: 181 SAQRPSAGLIHHSDRGAQ 198 QRP+AGLI HSDRG+Q Sbjct: 181 QRQRPAAGLICHSDRGSQ 198 >ref|YP_002419918.1| integrase catalytic subunit [Methylobacterium chloromethanicum CM4] gb|ACK81990.1| Integrase catalytic region [Methylobacterium chloromethanicum CM4] Length = 286 Score = 256 bits (654), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 123/198 (62%), Positives = 151/198 (76%) Query: 1 MRFRFIEDRRADYPVTLLCDVLGVSPAGYYAWRSRPESRRSAANRDLVDDIRRVHRDTRG 60 M F FIE + +PV L+C VL VSP+GYY WRSRPES RS +NR L+DD+RR+H + Sbjct: 1 MTFAFIEQHASTWPVRLMCRVLEVSPSGYYGWRSRPESARSVSNRQLLDDVRRIHAEHHR 60 Query: 61 RYGSPRIHVELKAQGRGASRGRIERLMRRHGIRAIMARPRRVRTTDSRHDLPIAPNLLDR 120 RYGSPR+H L+A+GR ASRGR+ERLMRR GIRA+ R + TTDSRHDLPIAPNLL + Sbjct: 61 RYGSPRVHAALRAEGRTASRGRVERLMRRQGIRALAGRRFQPCTTDSRHDLPIAPNLLKQ 120 Query: 121 NFIATAPNQIWLADITYIETDQGWLYLAAVMDLYSRRIVGWAMAEHLRADLPLAALRMAI 180 F A PN +WLADITY+ T +GWLYLAAV+DL +R+IVGW+M +H+R +L AL MA Sbjct: 121 LFSAALPNMVWLADITYLPTGEGWLYLAAVLDLATRKIVGWSMRDHMRTELTSVALMMAT 180 Query: 181 SAQRPSAGLIHHSDRGAQ 198 QRP+ GLI HSDRG+Q Sbjct: 181 QRQRPAGGLICHSDRGSQ 198 >ref|YP_001681975.1| integrase catalytic subunit [Caulobacter sp. K31] ref|YP_001682087.1| integrase catalytic subunit [Caulobacter sp. K31] ref|YP_001682183.1| integrase catalytic subunit [Caulobacter sp. K31] gb|ABZ69477.1| Integrase catalytic region [Caulobacter sp. K31] gb|ABZ69589.1| Integrase catalytic region [Caulobacter sp. K31] gb|ABZ69685.1| Integrase catalytic region [Caulobacter sp. K31] Length = 286 Score = 249 bits (635), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 115/198 (58%), Positives = 152/198 (76%) Query: 1 MRFRFIEDRRADYPVTLLCDVLGVSPAGYYAWRSRPESRRSAANRDLVDDIRRVHRDTRG 60 M+F F+++ R +PV ++C VLG+S +GYYAWR RPESRR+AANR L++DIR +H ++ G Sbjct: 1 MKFGFVDEHRGVWPVRMMCRVLGLSASGYYAWRVRPESRRAAANRALIEDIRLIHAESCG 60 Query: 61 RYGSPRIHVELKAQGRGASRGRIERLMRRHGIRAIMARPRRVRTTDSRHDLPIAPNLLDR 120 YGSPR+H L+ GR R R+ERLMRR G+R + A PRR RTTDSRH PIAPN L R Sbjct: 61 TYGSPRVHAVLRGHGRRVGRSRVERLMRRAGLRGLAALPRRTRTTDSRHGYPIAPNRLAR 120 Query: 121 NFIATAPNQIWLADITYIETDQGWLYLAAVMDLYSRRIVGWAMAEHLRADLPLAALRMAI 180 +F A AP Q+WLAD+TYI T +GWLYLA ++D+++R++VGW+M + L A + L AL MAI Sbjct: 121 HFQAAAPGQVWLADLTYIPTGEGWLYLAGILDMHTRKLVGWSMRDTLHAQIALDALTMAI 180 Query: 181 SAQRPSAGLIHHSDRGAQ 198 + Q+P+ GLIHHSDRG Q Sbjct: 181 ARQKPAPGLIHHSDRGIQ 198 >ref|YP_001682469.1| integrase catalytic subunit [Caulobacter sp. K31] gb|ABZ69971.1| Integrase catalytic region [Caulobacter sp. K31] Length = 286 Score = 249 bits (635), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 115/198 (58%), Positives = 152/198 (76%) Query: 1 MRFRFIEDRRADYPVTLLCDVLGVSPAGYYAWRSRPESRRSAANRDLVDDIRRVHRDTRG 60 M+F F+++ R +PV ++C VLG+S +GYYAWR RPESRR+AANR L++DIR +H ++ G Sbjct: 1 MKFGFVDEHRGVWPVRMMCRVLGLSASGYYAWRVRPESRRAAANRALIEDIRLIHAESCG 60 Query: 61 RYGSPRIHVELKAQGRGASRGRIERLMRRHGIRAIMARPRRVRTTDSRHDLPIAPNLLDR 120 YGSPR+H L+ GR R R+ERLMRR G+R + A PRR RTTDSRH PIAPN L R Sbjct: 61 TYGSPRVHAVLRGHGRRVGRSRVERLMRRAGLRGLAALPRRTRTTDSRHGYPIAPNRLAR 120 Query: 121 NFIATAPNQIWLADITYIETDQGWLYLAAVMDLYSRRIVGWAMAEHLRADLPLAALRMAI 180 +F A AP Q+WLAD+TYI T +GWLYLA ++D+++R++VGW+M + L A + L AL MAI Sbjct: 121 HFQAAAPGQVWLADLTYIPTGEGWLYLAGILDMHTRKLVGWSMRDTLHAQIALDALTMAI 180 Query: 181 SAQRPSAGLIHHSDRGAQ 198 + Q+P+ GLIHHSDRG Q Sbjct: 181 ARQKPAPGLIHHSDRGIQ 198 >ref|YP_001683570.1| integrase catalytic subunit [Caulobacter sp. K31] ref|YP_001683628.1| integrase catalytic subunit [Caulobacter sp. K31] gb|ABZ71072.1| Integrase catalytic region [Caulobacter sp. K31] gb|ABZ71130.1| Integrase catalytic region [Caulobacter sp. K31] Length = 286 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 115/198 (58%), Positives = 150/198 (75%) Query: 1 MRFRFIEDRRADYPVTLLCDVLGVSPAGYYAWRSRPESRRSAANRDLVDDIRRVHRDTRG 60 M+F F+++ R +PV ++C VLG+S +GYYAWR RPE RR+AANR L++DIR +H ++ G Sbjct: 1 MKFGFVDEHRGVWPVRMMCRVLGLSASGYYAWRVRPEGRRAAANRALIEDIRLIHAESCG 60 Query: 61 RYGSPRIHVELKAQGRGASRGRIERLMRRHGIRAIMARPRRVRTTDSRHDLPIAPNLLDR 120 YGSPR+H L+ GR R R+ERLMRR G+R + A PRR RTTDSRH PIAPN L R Sbjct: 61 TYGSPRVHAVLRGHGRRIGRSRVERLMRRAGLRGLAALPRRTRTTDSRHGYPIAPNRLAR 120 Query: 121 NFIATAPNQIWLADITYIETDQGWLYLAAVMDLYSRRIVGWAMAEHLRADLPLAALRMAI 180 NF A AP Q+WLAD+TYI T +GWLYLA ++D+++R++VGW+M + L A + L AL MAI Sbjct: 121 NFQAAAPGQVWLADLTYIPTGEGWLYLAGILDMHTRKLVGWSMRDTLHARIALEALTMAI 180 Query: 181 SAQRPSAGLIHHSDRGAQ 198 Q+P+ GLIHHSDRG Q Sbjct: 181 ERQKPAPGLIHHSDRGIQ 198