BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0062.0003.p         (68 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001925788.1| helicase domain-containing protein [Methylob...   111   3e-23
ref|ZP_03544985.1| helicase domain protein [Comamonas testostero...   109   1e-22
ref|YP_002018956.1| helicase domain-containing protein [Pelodict...   108   2e-22
ref|YP_115086.1| prophage LambdaMc01, SNF2 family helicase [Meth...   108   4e-22
ref|YP_994917.1| helicase domain-containing protein [Verminephro...   103   9e-21

>ref|YP_001925788.1| helicase domain-containing protein [Methylobacterium populi BJ001]
 gb|ACB81253.1| helicase domain protein [Methylobacterium populi BJ001]
          Length = 922

 Score =  111 bits (278), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 56/58 (96%), Positives = 56/58 (96%)

Query: 1   LSERLNDDRLYQEALSDPALKRTQVELEAALSNSREARQVVFDLFQDLDGFSLDDYKP 58
           LSERLN DRLYQEALSDP LKRTQVELEAALSNSREARQVVFDLFQDLDGFSLDDYKP
Sbjct: 669 LSERLNYDRLYQEALSDPELKRTQVELEAALSNSREARQVVFDLFQDLDGFSLDDYKP 726


>ref|ZP_03544985.1| helicase domain protein [Comamonas testosteroni KF-1]
 gb|EED69271.1| helicase domain protein [Comamonas testosteroni KF-1]
          Length = 929

 Score =  109 bits (273), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 55/58 (94%), Positives = 56/58 (96%)

Query: 1   LSERLNDDRLYQEALSDPALKRTQVELEAALSNSREARQVVFDLFQDLDGFSLDDYKP 58
           LSERLN DRLYQEALSDP LKRTQVELEAALSNSREARQVVFDLFQDLDGFSLDDY+P
Sbjct: 675 LSERLNYDRLYQEALSDPELKRTQVELEAALSNSREARQVVFDLFQDLDGFSLDDYQP 732


>ref|YP_002018956.1| helicase domain-containing protein [Pelodictyon phaeoclathratiforme
           BU-1]
 gb|ACF44339.1| helicase domain protein [Pelodictyon phaeoclathratiforme BU-1]
          Length = 927

 Score =  108 bits (271), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/58 (91%), Positives = 56/58 (96%)

Query: 1   LSERLNDDRLYQEALSDPALKRTQVELEAALSNSREARQVVFDLFQDLDGFSLDDYKP 58
           LSERLN DRLYQEALSDP LKRTQ+ELEAA+SNSREARQVVF+LFQDLDGFSLDDYKP
Sbjct: 671 LSERLNYDRLYQEALSDPELKRTQIELEAAMSNSREARQVVFNLFQDLDGFSLDDYKP 728


>ref|YP_115086.1| prophage LambdaMc01, SNF2 family helicase [Methylococcus capsulatus
           str. Bath]
 gb|AAU91285.1| prophage LambdaMc01, helicase, SNF2 family [Methylococcus
           capsulatus str. Bath]
          Length = 925

 Score =  108 bits (269), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 54/58 (93%), Positives = 56/58 (96%)

Query: 1   LSERLNDDRLYQEALSDPALKRTQVELEAALSNSREARQVVFDLFQDLDGFSLDDYKP 58
           LSERLN DRLYQEALSDP LKRT+VELEAALSNSREARQVVFDLFQDL+GFSLDDYKP
Sbjct: 671 LSERLNYDRLYQEALSDPELKRTRVELEAALSNSREARQVVFDLFQDLEGFSLDDYKP 728


>ref|YP_994917.1| helicase domain-containing protein [Verminephrobacter eiseniae
           EF01-2]
 gb|ABM55899.1| helicase domain protein [Verminephrobacter eiseniae EF01-2]
          Length = 443

 Score =  103 bits (257), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 52/58 (89%), Positives = 55/58 (94%)

Query: 1   LSERLNDDRLYQEALSDPALKRTQVELEAALSNSREARQVVFDLFQDLDGFSLDDYKP 58
           LSERLN  RLYQEALSDP L+RT+VELEAALSNSREARQVVFDLFQDL+GFSLDDYKP
Sbjct: 188 LSERLNYARLYQEALSDPELQRTRVELEAALSNSREARQVVFDLFQDLEGFSLDDYKP 245