BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0062.0001.p         (112 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_317086.1| acetyl-CoA synthetase [Nitrobacter winogradskyi...   205   2e-51
ref|NP_945564.1| acetyl-CoA synthetase [Rhodopseudomonas palustr...   204   3e-51
ref|YP_004106800.1| acetate/CoA ligase [Rhodopseudomonas palustr...   204   4e-51
ref|YP_001989245.1| acetyl-CoA synthetase [Rhodopseudomonas palu...   204   5e-51
ref|ZP_07026348.1| acetate/CoA ligase [Afipia sp. 1NLS2] >gi|298...   204   5e-51

>ref|YP_317086.1| acetyl-CoA synthetase [Nitrobacter winogradskyi Nb-255]
 gb|ABA03734.1| acetyl-coenzyme A synthetase [Nitrobacter winogradskyi Nb-255]
          Length = 652

 Score =  205 bits (521), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 98/108 (90%), Positives = 105/108 (97%)

Query: 1   VSEAAVVGYPHDIKGQGIYAYVTLMKGTEPTEALRKELVAWVRKDIGPIASPDLIQFAPG 60
           VSEAAVVGYPH+IKGQGIYAYVTLMKG EP+E+LRKELVAWVRKDIGPIASPDLIQFAPG
Sbjct: 540 VSEAAVVGYPHNIKGQGIYAYVTLMKGVEPSESLRKELVAWVRKDIGPIASPDLIQFAPG 599

Query: 61  LPKTRSGKIMRRILRKIAEDEPSSLGDTSTPADPAAVDDLVQNRQNKR 108
           LPKTRSGKIMRRILRKIAEDEPSSLGDT+T ADPA VDDLV+NRQN++
Sbjct: 600 LPKTRSGKIMRRILRKIAEDEPSSLGDTTTLADPAVVDDLVRNRQNRK 647


>ref|NP_945564.1| acetyl-CoA synthetase [Rhodopseudomonas palustris CGA009]
 emb|CAE25655.1| acetyl-CoA synthetase [Rhodopseudomonas palustris CGA009]
          Length = 650

 Score =  204 bits (519), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 100/108 (92%), Positives = 102/108 (94%)

Query: 1   VSEAAVVGYPHDIKGQGIYAYVTLMKGTEPTEALRKELVAWVRKDIGPIASPDLIQFAPG 60
           VSEAAVVGYPHDIKGQGIYAYVTLM G EPTE LRKELVAWVRKDIGPIASPDLIQFAPG
Sbjct: 539 VSEAAVVGYPHDIKGQGIYAYVTLMAGEEPTEELRKELVAWVRKDIGPIASPDLIQFAPG 598

Query: 61  LPKTRSGKIMRRILRKIAEDEPSSLGDTSTPADPAAVDDLVQNRQNKR 108
           LPKTRSGKIMRRILRKIAEDEPSSLGDTST ADPA VDDLV++RQNK 
Sbjct: 599 LPKTRSGKIMRRILRKIAEDEPSSLGDTSTLADPAVVDDLVEHRQNKH 646


>ref|YP_004106800.1| acetate/CoA ligase [Rhodopseudomonas palustris DX-1]
 gb|ADU42067.1| acetate/CoA ligase [Rhodopseudomonas palustris DX-1]
          Length = 650

 Score =  204 bits (519), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 100/108 (92%), Positives = 102/108 (94%)

Query: 1   VSEAAVVGYPHDIKGQGIYAYVTLMKGTEPTEALRKELVAWVRKDIGPIASPDLIQFAPG 60
           VSEAAVVGYPHDIKGQGIYAYVTLM G EPTE LRKELVAWVRKDIGPIASPDLIQFAPG
Sbjct: 539 VSEAAVVGYPHDIKGQGIYAYVTLMAGEEPTEELRKELVAWVRKDIGPIASPDLIQFAPG 598

Query: 61  LPKTRSGKIMRRILRKIAEDEPSSLGDTSTPADPAAVDDLVQNRQNKR 108
           LPKTRSGKIMRRILRKIAEDEPSSLGDTST ADPA VDDLV++RQNK 
Sbjct: 599 LPKTRSGKIMRRILRKIAEDEPSSLGDTSTLADPAVVDDLVEHRQNKH 646


>ref|YP_001989245.1| acetyl-CoA synthetase [Rhodopseudomonas palustris TIE-1]
 gb|ACE98769.1| acetate/CoA ligase [Rhodopseudomonas palustris TIE-1]
          Length = 650

 Score =  204 bits (518), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 100/108 (92%), Positives = 102/108 (94%)

Query: 1   VSEAAVVGYPHDIKGQGIYAYVTLMKGTEPTEALRKELVAWVRKDIGPIASPDLIQFAPG 60
           VSEAAVVGYPHDIKGQGIYAYVTLM G EPTE LRKELVAWVRKDIGPIASPDLIQFAPG
Sbjct: 539 VSEAAVVGYPHDIKGQGIYAYVTLMAGEEPTEDLRKELVAWVRKDIGPIASPDLIQFAPG 598

Query: 61  LPKTRSGKIMRRILRKIAEDEPSSLGDTSTPADPAAVDDLVQNRQNKR 108
           LPKTRSGKIMRRILRKIAEDEPSSLGDTST ADPA VDDLV++RQNK 
Sbjct: 599 LPKTRSGKIMRRILRKIAEDEPSSLGDTSTLADPAVVDDLVEHRQNKH 646


>ref|ZP_07026348.1| acetate/CoA ligase [Afipia sp. 1NLS2]
 gb|EFI53490.1| acetate/CoA ligase [Afipia sp. 1NLS2]
          Length = 651

 Score =  204 bits (518), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 99/112 (88%), Positives = 102/112 (91%)

Query: 1   VSEAAVVGYPHDIKGQGIYAYVTLMKGTEPTEALRKELVAWVRKDIGPIASPDLIQFAPG 60
           VSEAAVVGYPHDIKGQGIYAYVTLM G EP+EALRKELVAWVRKDIGPIA PDLIQFAPG
Sbjct: 540 VSEAAVVGYPHDIKGQGIYAYVTLMAGVEPSEALRKELVAWVRKDIGPIAQPDLIQFAPG 599

Query: 61  LPKTRSGKIMRRILRKIAEDEPSSLGDTSTPADPAAVDDLVQNRQNKRGAQA 112
           LPKTRSGKIMRRILRKIAEDEPSSLGDT+T ADP  V DLV NRQNK+ A A
Sbjct: 600 LPKTRSGKIMRRILRKIAEDEPSSLGDTTTLADPGVVTDLVNNRQNKKAAHA 651