BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0061.0028.p (531 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_08540007.1| WD domain, G-beta repeat protein [Oribacteriu... 66 1e-08 ref|ZP_03990353.1| WD repeat-containing protein [Oribacterium si... 58 4e-06 ref|YP_910651.1| TPR repeat-containing protein [Chlorobium phaeo... 54 5e-05 ref|ZP_03168622.1| hypothetical protein RUMLAC_02310 [Ruminococc... 54 5e-05 ref|ZP_07454200.1| possible WD repeat-containing protein [Eubact... 53 1e-04 >ref|ZP_08540007.1| WD domain, G-beta repeat protein [Oribacterium sp. oral taxon 108 str. F0425] gb|EGL38327.1| WD domain, G-beta repeat protein [Oribacterium sp. oral taxon 108 str. F0425] Length = 1016 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 75/273 (27%), Positives = 117/273 (42%), Gaps = 40/273 (14%) Query: 3 EFNYDAFISYRRSD-GIAVARWLRRTLVGFRLPA-VLRGAYAKKLRVYLDTAYERGTSDF 60 ++ YDAFISYR + +A+ + R + GF+ P + RV+ D E D Sbjct: 24 QYKYDAFISYRHVEPDQTIAKEIHRMIEGFKPPKEFYKSGKKTSFRVFRDRE-ELAARDL 82 Query: 61 YQQSIKPALLSSRYLIVVATPDAMRRPGGAEDWIEREIRDFAAGPGAGNVIVARGAGDFD 120 SI+ AL S +LIV+ + R P +W E+EIR F A G +I GD D Sbjct: 83 -SSSIEEALKESHFLIVLCSK---RTP--LSEWCEKEIRTFRALHGDSRIIPVLLEGDPD 136 Query: 121 GPLPGGLKET-------------------------FPNIEIVDLRGAGPLWFLSFSRVVR 155 P LK+ FP E V G L L+ V Sbjct: 137 ESFPMPLKQLKRGEDESLLDVLAADIRPEEVLKKDFPGYEAVQKTDKGKLTDLTKQAVKL 196 Query: 156 LSAEKLKIVAPLLNIPPEEMPRLRQEEEKRQQTQLGAVAGATLGTLVAVGGLSVLALINQ 215 L EK +I+A +L L+Q +++R+ +L + LG L + GL + A Sbjct: 197 LKVEKYRIMAAILGC---NFGDLKQRDKERKN-RLILTISSMLGALFLIFGLFMTAAYQ- 251 Query: 216 YKAIRANDDSMFAASSMIGEAANLRADDADTLR 248 KA +A +++ + +S++ + A A + D L+ Sbjct: 252 -KAEQARQEAVQSNASILLKTAKDIAKEGDYLK 283 >ref|ZP_03990353.1| WD repeat-containing protein [Oribacterium sinus F0268] gb|EEJ52420.1| WD repeat-containing protein [Oribacterium sinus F0268] Length = 1031 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 59/223 (26%), Positives = 93/223 (41%), Gaps = 34/223 (15%) Query: 3 EFNYDAFISYRRSD-GIAVARWLRRTLVGFRLPAVLRGAYAKK-LRVYLDTAYERGTSDF 60 E+ +DAFISYR + ++A+ L + + F+ P K RV+ D E D Sbjct: 40 EYKFDAFISYRHVEPDQSIAKQLHQMIESFKPPREFNKEGKKTTFRVFRDRE-ELAARDL 98 Query: 61 YQQSIKPALLSSRYLIVVATPDAMRRPGGAEDWIEREIRDFAAGPGAGNVIVARGAGDFD 120 SI+ AL SRYLIV+ + R P +W E+EIR F G +I G+ D Sbjct: 99 -SSSIEEALAESRYLIVLCSK---RTP--LSEWCEKEIRTFRQLHGDERIIPVLIEGEPD 152 Query: 121 GPLPGGLKE-------------------------TFPNIEIVDLRGAGPLWFLSFSRVVR 155 P LK+ FP E V + + L L+ + Sbjct: 153 EAFPAPLKQLKRGADQSLADVLAADIRPDEVLHKNFPGYEEVQKKDSAKLQNLTKQALHL 212 Query: 156 LSAEKLKIVAPLLNIPPEEMPRLRQEEEKRQQTQLGAVAGATL 198 L EK +I+A +L ++ + +E + R + +++GA Sbjct: 213 LKTEKYRIMATILGCTFGDLKQRDKERKNRLILTISSLSGAIF 255 >ref|YP_910651.1| TPR repeat-containing protein [Chlorobium phaeobacteroides DSM 266] gb|ABL64227.1| TPR repeat-containing protein [Chlorobium phaeobacteroides DSM 266] Length = 897 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 56/184 (30%), Positives = 92/184 (50%), Gaps = 31/184 (16%) Query: 3 EFNYDAFISYRRSDGIAVARWLRRTLVGFRLP-AVLR---GAYAKKLR-VYLDTAYERGT 57 ++ Y AFISY +D VA WL R L +RLP AVLR G + +R ++ D A + Sbjct: 9 QYQYFAFISYSHTDA-KVAEWLHRKLESYRLPNAVLRKSDGQLPRHVRPIFRDIA--DLS 65 Query: 58 SDFYQQSIKPALLSSRYLIVVATPDAMRRPGGAEDWIEREIRDFAAGPGAGNVI--VARG 115 S ++++ + S++LIV+ +PD+ + +W+E E+ F G VI + +G Sbjct: 66 SGSLARTLREEIGQSQFLIVICSPDSAK-----SEWVEMEVSHFLTLRGHEFVIPVIIKG 120 Query: 116 ---AGD-FDGPLPGGLKETFPNIEIVDLRGAGPLWFLSFSRVVRLSAEKLKIVAPLLNIP 171 A D D LP L T ++++ + AG S +V+ LK V+ LL+I Sbjct: 121 TPYAKDAVDECLPLSLLRT--EVDLLGISFAGQ----SKEQVL------LKTVSALLDIK 168 Query: 172 PEEM 175 + + Sbjct: 169 YDSL 172 >ref|ZP_03168622.1| hypothetical protein RUMLAC_02310 [Ruminococcus lactaris ATCC 29176] gb|EDY31880.1| hypothetical protein RUMLAC_02310 [Ruminococcus lactaris ATCC 29176] Length = 1113 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 61/244 (25%), Positives = 106/244 (43%), Gaps = 36/244 (14%) Query: 1 MSEFNYDAFISYRRSDGIAV-ARWLRRTLVGFRLPAVLRGAYAKKL--RVYLDTAYERGT 57 M ++ YDAFISY ++ A A L +TL + +P ++ + KK RV+ D E Sbjct: 1 MKKYTYDAFISYSHNEKDAFAAEQLHKTLEHYHIPKRIQQSSGKKKIERVFRDRE-EMPI 59 Query: 58 SDFYQQSIKPALLSSRYLIVVATPDAMRRPGGAEDWIEREIRDFAAGPGAGNVIVARGAG 117 S +I+ AL S +LI++ +P++++ +W++RE+ F V+ G Sbjct: 60 SFNLASNIQEALDQSEFLILMCSPNSIKS-----EWVQREVETFLKSHSKEQVLTVLLEG 114 Query: 118 DFDGPLPGGL------------KETFPNIEI----VDLRGAGPLWFLSFSRV-VRLSAEK 160 + + P L E ++I D+RG S + ++ E Sbjct: 115 EPEKVFPEVLCYEERKVESEDGTEQTVKVKIEPMAADIRGKDK------SEIKKKIEQES 168 Query: 161 LKIVAPLLNIPPEEM-PRLRQEEEKRQQTQLGAVAGATLGTLVAVGGLSVLALINQ-YKA 218 L+I+A +L + + R R+ R LG VAG + + + A IN+ Y+ Sbjct: 169 LRILAKMLGCTYDTLRQRHREYALHRMMAVLGGVAG--VAVVFTIYAFHQSAKINERYQE 226 Query: 219 IRAN 222 R N Sbjct: 227 SRRN 230 >ref|ZP_07454200.1| possible WD repeat-containing protein [Eubacterium yurii subsp. margaretiae ATCC 43715] gb|EFM39346.1| possible WD repeat-containing protein [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 1021 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 61/129 (47%), Gaps = 9/129 (6%) Query: 3 EFNYDAFISYRRSD-GIAVARWLRRTLVGFRLPAVLRGAYAK-KLRVYLDTAYERGTSDF 60 ++ YDAFISYR + ++A+ + + + F+ P K RV+ D E D Sbjct: 25 KYKYDAFISYRHVEPDQSIAKQVHQMIETFKAPKEFYVNGEKPTFRVFRDRE-ELAARDL 83 Query: 61 YQQSIKPALLSSRYLIVVATPDAMRRPGGAEDWIEREIRDFAAGPGAGNVIVARGAGDFD 120 SI+ AL +SRYLIV+ + R P DW E+EI F G +I G+ D Sbjct: 84 -STSIEDALATSRYLIVICSK---RTP--LSDWCEKEIETFRRMHGDERIIPVLIEGEVD 137 Query: 121 GPLPGGLKE 129 P LK+ Sbjct: 138 ESFPRALKQ 146