BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0061.0020.p (182 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_577913.1| RNA polymerase sigma factor [Nitrobacter hambur... 143 9e-33 ref|YP_001239007.1| RNA polymerase sigma factor [Bradyrhizobium ... 130 7e-29 ref|YP_001204692.1| RNA polymerase sigma factor [Bradyrhizobium ... 129 2e-28 ref|NP_769654.1| RNA polymerase sigma factor [Bradyrhizobium jap... 126 2e-27 ref|YP_002945885.1| ECF subfamily RNA polymerase sigma-24 subuni... 109 2e-22 >ref|YP_577913.1| RNA polymerase sigma factor [Nitrobacter hamburgensis X14] gb|ABE63453.1| sigma-24 (FecI-like) [Nitrobacter hamburgensis X14] Length = 216 Score = 143 bits (361), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 80/178 (44%), Positives = 102/178 (57%), Gaps = 27/178 (15%) Query: 1 MMRSAKAGNKTAQQFRDAALPCLDDAYAFAQVLMRTEADAELAVQECYRRALRRFDGLRG 60 + S++ AQ+FR+AALP LDD Y A+ L+R ADAE AVQECY RAL FD RG Sbjct: 30 LFGSSRDDQAKAQRFREAALPYLDDVYTVARYLLRNPADAEDAVQECYLRALNHFDSYRG 89 Query: 61 PAIRPWLLAILKAVCLEKLGQELAGENVA----PE-----------------------RR 93 PA++PWLLAIL+ VC + + PE R Sbjct: 90 PAMKPWLLAILRNVCHAEFARRTRSSTTTIDDLPESAEAAAAPLWRETQDTPETQVLQER 149 Query: 94 DSATIRQLVADLPAPLREVIALREMIDLSYKEIAEVTGIPVTTVMSRIAEARAMLLAA 151 D+ +IR+++A L P RE LRE+ +LSY+EIAE G PV TVMSR+A ARAML +A Sbjct: 150 DANSIRRMIAALEEPFRETFVLREIQNLSYREIAETVGAPVGTVMSRLARARAMLRSA 207 >ref|YP_001239007.1| RNA polymerase sigma factor [Bradyrhizobium sp. BTAi1] gb|ABQ35101.1| Putative RNA polymerase sigma factor [Bradyrhizobium sp. BTAi1] Length = 182 Score = 130 bits (328), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 71/163 (43%), Positives = 97/163 (59%), Gaps = 25/163 (15%) Query: 2 MRSAKAGNKTAQQFRDAALPCLDDAYAFAQVLMRTEADAELAVQECYRRALRRFDGLRGP 61 M + + A++FR+AALP LDD Y A+ L+R +ADAE AVQECY RA + FD RGP Sbjct: 1 MTTPHDDPERARRFREAALPHLDDVYTLARYLLRHQADAEDAVQECYLRAYKHFDTYRGP 60 Query: 62 AIRPWLLAILKAVCLEKL----GQELAGENVAPE---------------------RRDSA 96 AI+PWL AIL+ VC + G + + APE +RD++ Sbjct: 61 AIKPWLFAILRNVCHAEFARRAGAPVKALDDAPETTEQAPLWQDSVETPEGAMLRQRDAS 120 Query: 97 TIRQLVADLPAPLREVIALREMIDLSYKEIAEVTGIPVTTVMS 139 +I++L+ L P RE + LRE+ +LSY+EIAE G+PV TVMS Sbjct: 121 SIQRLIDTLTEPFRETLVLREINNLSYREIAEAAGVPVGTVMS 163 >ref|YP_001204692.1| RNA polymerase sigma factor [Bradyrhizobium sp. ORS 278] emb|CAL76455.1| Putative RNA polymerase sigma factor [Bradyrhizobium sp. ORS 278] Length = 183 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 72/163 (44%), Positives = 95/163 (58%), Gaps = 25/163 (15%) Query: 2 MRSAKAGNKTAQQFRDAALPCLDDAYAFAQVLMRTEADAELAVQECYRRALRRFDGLRGP 61 M ++ + A++FR+AALP LDD Y A+ L+R ADAE AVQECY RAL+ FD RGP Sbjct: 1 MATSPDDPERARRFREAALPYLDDVYTLARYLLRNPADAEDAVQECYLRALKHFDSYRGP 60 Query: 62 AIRPWLLAILKAVCLEK-----------------------LGQELAG--ENVAPERRDSA 96 A++PWL AIL+ VC + L QE A E+ D++ Sbjct: 61 AMKPWLFAILRNVCHAEFARRAGAPAKTLDDAPESGEQAPLWQESAETPESAVLREHDAS 120 Query: 97 TIRQLVADLPAPLREVIALREMIDLSYKEIAEVTGIPVTTVMS 139 I+Q++A L P RE LRE+ +LSY+EIAE G+PV TVMS Sbjct: 121 AIQQMIATLAEPFRETFVLREINNLSYREIAEAAGVPVGTVMS 163 >ref|NP_769654.1| RNA polymerase sigma factor [Bradyrhizobium japonicum USDA 110] dbj|BAC48279.1| bll3014 [Bradyrhizobium japonicum USDA 110] Length = 204 Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 69/154 (44%), Positives = 90/154 (58%), Gaps = 24/154 (15%) Query: 10 KTAQQFRDAALPCLDDAYAFAQVLMRTEADAELAVQECYRRALRRFDGLRGPAIRPWLLA 69 + AQ+FR+AALP LDD Y A+ L+R +DAE AVQECY RAL+ FD RGPA++PWL A Sbjct: 30 QKAQRFREAALPYLDDVYTLARYLLRDASDAEDAVQECYLRALKHFDSYRGPAMKPWLFA 89 Query: 70 ILKAVCLEKLG---------QELAG----------ENVAPE-----RRDSATIRQLVADL 105 IL+ VC + ++ G +PE RD+ IR+L+ L Sbjct: 90 ILRNVCNAEYARRAHRPSAIEDTPGAAEQTPIWQETGASPETEVLRSRDAGAIRKLIDTL 149 Query: 106 PAPLREVIALREMIDLSYKEIAEVTGIPVTTVMS 139 P +E LRE+ +LSY+EIAE G PV TVMS Sbjct: 150 AEPFKETFVLREINNLSYREIAEAVGAPVGTVMS 183 >ref|YP_002945885.1| ECF subfamily RNA polymerase sigma-24 subunit [Variovorax paradoxus S110] gb|ACS20619.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Variovorax paradoxus S110] Length = 187 Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 71/177 (40%), Positives = 99/177 (55%), Gaps = 28/177 (15%) Query: 13 QQFRDAALPCLDDAYAFAQVLMRTEADAELAVQECYRRALRRFDGLRGPAIRPWLLAILK 72 +QF AALP LD A+ A+ L+R + A+ AVQE Y RA R FDGLRG + RPWLL I++ Sbjct: 6 RQFEAAALPHLDAAWNLARWLLRDDQLADDAVQEAYLRAFRFFDGLRGESARPWLLGIVR 65 Query: 73 AVCLEKLGQ--ELAGENVAPERRDSATI-----------RQL------------VADLPA 107 C + + Q +LA + E RDS + RQ + LPA Sbjct: 66 NACYDWMRQNRQLADQLEFDELRDSGAMPPASAECADPARQWEQRAQGERINAAIDALPA 125 Query: 108 PLREVIALREMIDLSYKEIAEVTGIPVTTVMSRIAEARAML---LAARRAANKTTQT 161 REVI LRE+ ++ Y++IA + G+P+ TVMSR++ ARA+L L R + T +T Sbjct: 126 AYREVIVLRELEEMRYEDIARIAGVPLGTVMSRLSRARALLRESLRGERPGDGTERT 182