BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0061.0019.p (349 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_768844.1| transcriptional regulator [Bradyrhizobium japon... 273 2e-71 ref|NP_770504.1| transcriptional regulator [Bradyrhizobium japon... 137 4e-30 ref|YP_004140017.1| AraC type helix-turn-helix- domain containin... 130 3e-28 ref|YP_004140237.1| AraC type helix-turn-helix- domain containin... 125 1e-26 ref|YP_578054.1| AraC family transcriptional regulator [Nitrobac... 119 9e-25 >ref|NP_768844.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC47469.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 319 Score = 273 bits (699), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 153/319 (47%), Positives = 197/319 (61%), Gaps = 2/319 (0%) Query: 24 MSETQVPNRFSIFHHGLAKGPAYEAWREGICRGFCRLDVGPTDDNHIDCHNEFTLLHTVA 83 M + P F + GL G A+E WR+ G C LD+GP+ + IDC + +++ +A Sbjct: 1 MDAAKTPGIFVHQYAGLPIGLAFEQWRDRAF-GACGLDIGPSHGDSIDCRLQISVVDNIA 59 Query: 84 IATPRGGSARFARTRALLNDGCDDLVLIFATRGTVQVTQAGKAIELQRGQMCLTEMNIVG 143 +A P G SA++ RT++ L DG DDLVLI A G V+V Q G +EL QM L +M I G Sbjct: 60 LAIPEGASAQYTRTQSHLADGSDDLVLIAAHAGLVRVGQNGHTVELAPAQMVLVDMGITG 119 Query: 144 TADLTRSGSFTTTRFPRRLLLQIAPSAETQLARVLGREPALGAMIERYSALCTELAGDLD 203 T T FTT R PRR LL I P AE +L++VL + A+ I RY AL LD Sbjct: 120 TVGHTDEDRFTTIRMPRRALLDINPRAEEKLSQVLA-DGAVAETIFRYHALAANHGPHLD 178 Query: 204 APGQQAAAHHLADLVGLVLGNSAETKELAARDGVAKARLDLMKADVLKNLDNCKLTIEAV 263 A GQ+ A H+ DLVGL+LG AE L G A ARLDLM+ADV+ L L + V Sbjct: 179 AVGQRLTAQHMVDLVGLLLGTDAEHASLMRGRGQAAARLDLMRADVMAALGRNDLCLAEV 238 Query: 264 AKANALSTRQAQRLFASEGTTFSEFVLDQRLLLARRLLLHEEGAGRKVSDIAYTVGFNDL 323 A + LS RQAQRLF GTTF+EFVL+QRLLLAR+LL RK+SDIA++ GF+DL Sbjct: 239 ATRSGLSPRQAQRLFEQAGTTFTEFVLEQRLLLARKLLGDPRARTRKISDIAHSSGFSDL 298 Query: 324 SYFHRAFRRKFGVAPVEMQ 342 SYF+RAFR++FG P E++ Sbjct: 299 SYFNRAFRKRFGATPSELR 317 >ref|NP_770504.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC49129.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 355 Score = 137 bits (344), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 102/317 (32%), Positives = 152/317 (47%), Gaps = 7/317 (2%) Query: 31 NRFSIFHHGLAKGPAYE---AWREGICRGFCRLDVGPTDDNHIDCHNEFTLLHTVAIATP 87 + FSIF+ P E RE CRG + +V + +L + Sbjct: 36 DEFSIFNVSTDHIPEDERVPLLREFYCRGVLKAEVEVREGKPAAASFTSHVLPEAQLLIG 95 Query: 88 RGGSARFARTRALLNDGCDDLVLIFATRGTVQVTQAGKAIELQRGQMCLTEMNIVGTADL 147 AR RT+ L+ DG D L LI G + +++ G + L+ G+ LT V + Sbjct: 96 GLCGARVVRTKHLVADGDDSLALIVNRSGVLGISERGHDLRLRAGEAVLTSAEDVTIFER 155 Query: 148 TRSGSFTTTRFPRRLLLQIAPSAETQLARVLGREP-ALGAMIERYSALCTELAGDLDAPG 206 GS + R PRR+L + + + RV+ L +++ AL E L P Sbjct: 156 LSLGSGFSLRVPRRVLAPMIVDVDDAVMRVIPESTTGLRLLVDYAIALVHEKV--LAVPA 213 Query: 207 -QQAAAHHLADLVGLVLGNSAETKELAARDGVAKARLDLMKADVLKNLDNCKLTIEAVAK 265 +Q HL DL+ LVLG + +E R G+ ARL K ++ N +++ VA+ Sbjct: 214 MRQLGVAHLHDLLALVLGATDHARESTGRRGIKAARLQKAKFLIVNNCWQQDISVANVAQ 273 Query: 266 ANALSTRQAQRLFASEGTTFSEFVLDQRLLLARRLLLHEEGAGRKVSDIAYTVGFNDLSY 325 ++ R QRLF ++G TFS F+ +QRL A R+L + A R VS IAY VGF DLSY Sbjct: 274 ELGVTPRYLQRLFEADGKTFSSFLTEQRLKRAHRMLREPDFAERPVSSIAYDVGFGDLSY 333 Query: 326 FHRAFRRKFGVAPVEMQ 342 F+R FRR +G P +++ Sbjct: 334 FNRCFRRAYGATPSDVR 350 >ref|YP_004140017.1| AraC type helix-turn-helix- domain containing protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gb|ADV09967.1| helix-turn-helix- domain containing protein AraC type [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 323 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 94/297 (31%), Positives = 146/297 (49%), Gaps = 5/297 (1%) Query: 47 EAWREGICRGFCRLDVGPTDDNHIDCHNEFTLLHTVAIATPRGGSARFARTRALLNDGCD 106 E RE R R+D+ P ID L + IAT R RT +L+++ D Sbjct: 25 EITREVYGRTVLRVDLDPLAPAQIDM--RVRALPGLGIATGSSSEFRVHRTSSLIDN--D 80 Query: 107 DLVLIFATRGTVQVTQAGKAIELQRGQMCLTEMNIVGTADLTRSG-SFTTTRFPRRLLLQ 165 D VL+ A G + G+ + GQ + VG + G F F R+ L Sbjct: 81 DFVLLAALDGGSVMKHRGREEAVGNGQALMMSGEEVGLNLIGAGGFRFVNLSFSRKQLSP 140 Query: 166 IAPSAETQLARVLGREPALGAMIERYSALCTELAGDLDAPGQQAAAHHLADLVGLVLGNS 225 + L R L + ++ Y + E+ +L A AA H+ DL L +G + Sbjct: 141 LIGDPAAVLMRPLPTQSGAMRLLLDYISSIQEVGDELTAEACHLAAAHVFDLAALAMGAT 200 Query: 226 AETKELAARDGVAKARLDLMKADVLKNLDNCKLTIEAVAKANALSTRQAQRLFASEGTTF 285 + ++A GV+ ARL +KAD++ + + L+ + VA + LS R ++LF S+GT+ Sbjct: 201 RDAAQIARGRGVSVARLRAIKADIVAHGGHVDLSAQDVAARHGLSARYVRKLFESDGTSL 260 Query: 286 SEFVLDQRLLLARRLLLHEEGAGRKVSDIAYTVGFNDLSYFHRAFRRKFGVAPVEMQ 342 +F++ QRL A R+L AGR ++ IAY GFNDLSYF+RAFRR++ P +++ Sbjct: 261 IDFMMTQRLARAHRMLGDPRHAGRSITAIAYEAGFNDLSYFNRAFRRRYDATPSDVR 317 >ref|YP_004140237.1| AraC type helix-turn-helix- domain containing protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gb|ADV10187.1| helix-turn-helix- domain containing protein AraC type [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 323 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 97/312 (31%), Positives = 151/312 (48%), Gaps = 9/312 (2%) Query: 33 FSIFHHGLAKGPAYEAWREGICRGFCRLDVGPTDDNHIDCHNEFTLLHTVAIATPRGGSA 92 F + L + E RE R ++D+ P H+D + L + IAT Sbjct: 13 FRLMTDALPERDRVEVMREVYGRTVLKVDLDPLGPTHVDM--QVRALPGLGIATGTCSEF 70 Query: 93 RFARTRALLNDGCDDLVLIFATRGTVQVTQAGKAIELQRGQMCLTEMNIVGTADLTRSG- 151 R + +L++ DDLVL+ A G + G+ + GQ + VG + G Sbjct: 71 RVHHSTSLID--SDDLVLLVALDGASVMKHRGREEPVGNGQALMMSGEEVGLNVIQPGGL 128 Query: 152 SFTTTRFPRRLLLQIAPSAETQLARVLGREPALGAMIERYSALCTELAGDLDAP-GQQAA 210 F F + L + L + L ++ Y + AGD+ P A Sbjct: 129 RFVNMSFSLKALSPLIGDPAPALMQPLPTSGGAMRLLLDY-VRSIQDAGDVLTPEAWHLA 187 Query: 211 AHHLADLVGLVLGNSAETKELAARDGVAKARLDLMKADVLKNLDNCKLTIEAVAKANALS 270 H+ DLV L +G + + E+A GV ARL +KA++ + L+ E +A+ + LS Sbjct: 188 TTHIFDLVALAMGATRDAAEIARGRGVRVARLRAIKAEITAH--GGDLSAEDIARRHRLS 245 Query: 271 TRQAQRLFASEGTTFSEFVLDQRLLLARRLLLHEEGAGRKVSDIAYTVGFNDLSYFHRAF 330 R ++LF SEGT+ S+F+L QRLL A R+L + AGR ++ IA+ GFNDLSYF+RAF Sbjct: 246 ARYIRKLFESEGTSLSDFMLCQRLLRAHRMLSNPRHAGRSITAIAFEAGFNDLSYFNRAF 305 Query: 331 RRKFGVAPVEMQ 342 RR++G P +++ Sbjct: 306 RRRYGATPSDVR 317 >ref|YP_578054.1| AraC family transcriptional regulator [Nitrobacter hamburgensis X14] gb|ABE63594.1| transcriptional regulator, AraC family [Nitrobacter hamburgensis X14] Length = 332 Score = 119 bits (297), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 94/303 (31%), Positives = 141/303 (46%), Gaps = 17/303 (5%) Query: 49 WREGICRGFCRLDVGPTDDNHIDCHNEFTLLHTVAIATPRGGSARFARTRALLNDGCDDL 108 WRE + RLD+ P E L A A+ R +RT+ L+ D D+ Sbjct: 30 WREVFGQTMVRLDIEPAKGTSFHAEGELCALPGAAFASVTVSPVRVSRTQRLIADDMADM 89 Query: 109 VLI--------FATRGTVQVTQAGKAIELQRGQMCLTEMNIVGTADLTRSGSFTTTRFPR 160 V + A RG QV AG AI L RG C +++ D R FT Sbjct: 90 VFLVTADAPLRIAQRGREQVLDAGDAIFL-RGSEC----SVIQCRDRAR---FTNISVSI 141 Query: 161 RLLLQIAPSAETQLARVLGREPALGAMIERYSALCTELAGDLDAPGQQAAAHHLADLVGL 220 L + + E V+ R+ + + Y +L + A H+ DL+ Sbjct: 142 DDLTPMLANREDVSLTVVSRQNEMLDFLVGYVSLLQARQKPCSDELGRIATAHIRDLMAA 201 Query: 221 VLGNSAETKELA-ARDGVAKARLDLMKADVLKNLDNCKLTIEAVAKANALSTRQAQRLFA 279 ++G + A R GV ARL +K+D+ +L L+I+ +A + +S R ++LF Sbjct: 202 MIGAEPDCGSPARERGGVRAARLRAIKSDIGTHLCEPGLSIDMIAARHGISPRYVRKLFQ 261 Query: 280 SEGTTFSEFVLDQRLLLARRLLLHEEGAGRKVSDIAYTVGFNDLSYFHRAFRRKFGVAPV 339 E TTFS+FVL RL +RRLLL A ++ IA+ GF+DLSYF+R FRR++ V P Sbjct: 262 DEHTTFSDFVLSLRLEWSRRLLLSPGHATCTIASIAHASGFSDLSYFNRTFRRRYAVTPS 321 Query: 340 EMQ 342 +++ Sbjct: 322 DIR 324