BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0061.0009.p         (237 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_534595.1| MotA/TolQ/ExbB proton channel [Rhodopseudomonas...   448   e-124
ref|YP_578704.1| MotA/TolQ/ExbB proton channel [Nitrobacter hamb...   447   e-124
ref|YP_319325.1| MotA/TolQ/ExbB proton channel [Nitrobacter wino...   444   e-123
ref|ZP_01045371.1| MotA/TolQ/ExbB proton channel [Nitrobacter sp...   443   e-122
ref|YP_001242677.1| TolQ protein [Bradyrhizobium sp. BTAi1] >gi|...   442   e-122

>ref|YP_534595.1| MotA/TolQ/ExbB proton channel [Rhodopseudomonas palustris BisB18]
 gb|ABD90276.1| MotA/TolQ/ExbB proton channel [Rhodopseudomonas palustris BisB18]
          Length = 237

 Score =  448 bits (1152), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 222/236 (94%), Positives = 229/236 (97%)

Query: 1   MNPADVAQSTLPLASSDVSLIALFWQAHWVVKCVMLGLLSCSVWVWAIAIDKILLYARTK 60
           MNPA+VAQS LPLASSDVSLIALF QAHWVVK VMLGLL CSVWVWAIAIDK+LLY+RTK
Sbjct: 1   MNPAEVAQSALPLASSDVSLIALFLQAHWVVKAVMLGLLGCSVWVWAIAIDKMLLYSRTK 60

Query: 61  RAMDKFEQAFWSGQSIEELYRALSAKPTQSMAACFVAAMREWKRSFESQSRSFAGLQARI 120
           RAMD+FEQAFWSG+SI+ELYRALSAKPTQSMAACFVAAMREWKRSFESQ+RSFAGLQ RI
Sbjct: 61  RAMDRFEQAFWSGESIDELYRALSAKPTQSMAACFVAAMREWKRSFESQARSFAGLQMRI 120

Query: 121 EKVMNVSIAREVERLERRLLVLATVGSAGPFVGLFGTVWGIMSSFQSIAASKNTSLAVVA 180
           EKVMNVSIAREVERLERRLLVLATVGSAGPFVGLFGTVWGIMSSFQSIAASKNTSLAVVA
Sbjct: 121 EKVMNVSIAREVERLERRLLVLATVGSAGPFVGLFGTVWGIMSSFQSIAASKNTSLAVVA 180

Query: 181 PGIAEALFATAIGLIAAIPATIFYNKFTSEVNRQAARLEGFADEFSAILSRQIDER 236
           PGIAEALFATAIGLIAAIPATIFYNKF SEVNRQA RLEGFADEFSAILSRQIDER
Sbjct: 181 PGIAEALFATAIGLIAAIPATIFYNKFASEVNRQAQRLEGFADEFSAILSRQIDER 236


>ref|YP_578704.1| MotA/TolQ/ExbB proton channel [Nitrobacter hamburgensis X14]
 gb|ABE64244.1| Cell division and transport-associated protein TolQ [Nitrobacter
           hamburgensis X14]
          Length = 237

 Score =  447 bits (1149), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 218/236 (92%), Positives = 228/236 (96%)

Query: 1   MNPADVAQSTLPLASSDVSLIALFWQAHWVVKCVMLGLLSCSVWVWAIAIDKILLYARTK 60
           MNPADVAQS LPLAS+DVSLI LF+ AHW+VK VMLGLL CSVWVWAIAIDK+ LYARTK
Sbjct: 1   MNPADVAQSALPLASADVSLITLFFHAHWIVKAVMLGLLGCSVWVWAIAIDKMFLYARTK 60

Query: 61  RAMDKFEQAFWSGQSIEELYRALSAKPTQSMAACFVAAMREWKRSFESQSRSFAGLQARI 120
           RAMD+FEQAFWSG+SIE+LYRALSAKPTQSMAACFVAAMREWKRSFESQ+RSFAGLQ RI
Sbjct: 61  RAMDRFEQAFWSGESIEDLYRALSAKPTQSMAACFVAAMREWKRSFESQTRSFAGLQMRI 120

Query: 121 EKVMNVSIAREVERLERRLLVLATVGSAGPFVGLFGTVWGIMSSFQSIAASKNTSLAVVA 180
           EKVMNVSIARE+ERLERRLLVLATVGSAGPFVGLFGTVWGIMSSFQSIAASKNTSLAVVA
Sbjct: 121 EKVMNVSIAREIERLERRLLVLATVGSAGPFVGLFGTVWGIMSSFQSIAASKNTSLAVVA 180

Query: 181 PGIAEALFATAIGLIAAIPATIFYNKFTSEVNRQAARLEGFADEFSAILSRQIDER 236
           PGIAEALFATA+GLIAAIPATIFYNKFTSEVNRQA RLEGFADEFSAILSRQIDER
Sbjct: 181 PGIAEALFATAVGLIAAIPATIFYNKFTSEVNRQAQRLEGFADEFSAILSRQIDER 236


>ref|YP_319325.1| MotA/TolQ/ExbB proton channel [Nitrobacter winogradskyi Nb-255]
 gb|ABA05973.1| Cell division and transport-associated protein TolQ [Nitrobacter
           winogradskyi Nb-255]
          Length = 237

 Score =  444 bits (1141), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 218/237 (91%), Positives = 227/237 (95%)

Query: 1   MNPADVAQSTLPLASSDVSLIALFWQAHWVVKCVMLGLLSCSVWVWAIAIDKILLYARTK 60
           MNPADVAQS LPLAS+DVSLI LF+ AHW+VK VMLGLL+CSVWVWAIAIDK  LYARTK
Sbjct: 1   MNPADVAQSALPLASADVSLITLFFHAHWIVKAVMLGLLACSVWVWAIAIDKTFLYARTK 60

Query: 61  RAMDKFEQAFWSGQSIEELYRALSAKPTQSMAACFVAAMREWKRSFESQSRSFAGLQARI 120
           RAMD+FEQAFWSG+SIE+LYRALSAKPTQSMAACFVAAMREWKRSFESQ+RS AGLQ RI
Sbjct: 61  RAMDRFEQAFWSGESIEDLYRALSAKPTQSMAACFVAAMREWKRSFESQARSIAGLQMRI 120

Query: 121 EKVMNVSIAREVERLERRLLVLATVGSAGPFVGLFGTVWGIMSSFQSIAASKNTSLAVVA 180
           EKVMNVSIAREVERLERRLLVLATVGSAGPFVGLFGTVWGIMSSFQSIAASKNTSLAVVA
Sbjct: 121 EKVMNVSIAREVERLERRLLVLATVGSAGPFVGLFGTVWGIMSSFQSIAASKNTSLAVVA 180

Query: 181 PGIAEALFATAIGLIAAIPATIFYNKFTSEVNRQAARLEGFADEFSAILSRQIDERG 237
           PGIAEALFATAIGLIAAIPATIFYNKFT+EVNRQA RLEGFADEFSAILSRQIDER 
Sbjct: 181 PGIAEALFATAIGLIAAIPATIFYNKFTAEVNRQAQRLEGFADEFSAILSRQIDERA 237


>ref|ZP_01045371.1| MotA/TolQ/ExbB proton channel [Nitrobacter sp. Nb-311A]
 gb|EAQ36699.1| MotA/TolQ/ExbB proton channel [Nitrobacter sp. Nb-311A]
          Length = 237

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 216/237 (91%), Positives = 227/237 (95%)

Query: 1   MNPADVAQSTLPLASSDVSLIALFWQAHWVVKCVMLGLLSCSVWVWAIAIDKILLYARTK 60
           MNPADVAQS LPLAS+DVSLI LF+ AHW+VK VMLGLL+CSVWVWAIAIDK+ LY RTK
Sbjct: 1   MNPADVAQSALPLASADVSLITLFFHAHWIVKAVMLGLLACSVWVWAIAIDKMFLYTRTK 60

Query: 61  RAMDKFEQAFWSGQSIEELYRALSAKPTQSMAACFVAAMREWKRSFESQSRSFAGLQARI 120
           RAMD+FEQAFWSG+SIE+LYRALSAKPTQSMAACFVAAMREWKRSFESQ+RS AGLQ RI
Sbjct: 61  RAMDRFEQAFWSGESIEDLYRALSAKPTQSMAACFVAAMREWKRSFESQARSIAGLQMRI 120

Query: 121 EKVMNVSIAREVERLERRLLVLATVGSAGPFVGLFGTVWGIMSSFQSIAASKNTSLAVVA 180
           EKVMNVSIARE+ERLERRLLVLATVGSAGPFVGLFGTVWGIMSSFQSIAASKNTSLAVVA
Sbjct: 121 EKVMNVSIAREIERLERRLLVLATVGSAGPFVGLFGTVWGIMSSFQSIAASKNTSLAVVA 180

Query: 181 PGIAEALFATAIGLIAAIPATIFYNKFTSEVNRQAARLEGFADEFSAILSRQIDERG 237
           PGIAEALFATAIGLIAAIPATIFYNKFT+EVNRQA RLEGFADEFSAILSRQIDER 
Sbjct: 181 PGIAEALFATAIGLIAAIPATIFYNKFTAEVNRQAQRLEGFADEFSAILSRQIDERA 237


>ref|YP_001242677.1| TolQ protein [Bradyrhizobium sp. BTAi1]
 gb|ABQ38771.1| Cell division and transport-associated protein TolQ [Bradyrhizobium
           sp. BTAi1]
          Length = 237

 Score =  442 bits (1137), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 216/237 (91%), Positives = 227/237 (95%)

Query: 1   MNPADVAQSTLPLASSDVSLIALFWQAHWVVKCVMLGLLSCSVWVWAIAIDKILLYARTK 60
           MNPADVA + LP+ S DVSLIALFWQAHWVVK VMLGL++CSVWVWAIAIDK+ LY+RT+
Sbjct: 1   MNPADVAPAALPVVSGDVSLIALFWQAHWVVKGVMLGLITCSVWVWAIAIDKLFLYSRTR 60

Query: 61  RAMDKFEQAFWSGQSIEELYRALSAKPTQSMAACFVAAMREWKRSFESQSRSFAGLQARI 120
           R+MD+FEQAFWSG+SIEELYRALSAKPTQSMAACFVAAMREWKRSFE  +RSFAGLQ RI
Sbjct: 61  RSMDRFEQAFWSGESIEELYRALSAKPTQSMAACFVAAMREWKRSFEGHARSFAGLQMRI 120

Query: 121 EKVMNVSIAREVERLERRLLVLATVGSAGPFVGLFGTVWGIMSSFQSIAASKNTSLAVVA 180
           EKVMNVSIAREVERLERRLLVLATVGSAGPFVGLFGTVWGIMSSFQSIAASKNTSLAVVA
Sbjct: 121 EKVMNVSIAREVERLERRLLVLATVGSAGPFVGLFGTVWGIMSSFQSIAASKNTSLAVVA 180

Query: 181 PGIAEALFATAIGLIAAIPATIFYNKFTSEVNRQAARLEGFADEFSAILSRQIDERG 237
           PGIAEALFATAIGLIAAIPATIFYNKFTSEVNRQA RLEGFADEFSAILSRQIDERG
Sbjct: 181 PGIAEALFATAIGLIAAIPATIFYNKFTSEVNRQAQRLEGFADEFSAILSRQIDERG 237